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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915715
Clone id YMU001_000074_H10
Library
Length 510
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATTCGCGGCCATAATATGATGACAAATCCCCCTTGAAAGTTGCAAGGCCCTCAACACTG
TGATCAGGCTCATCTCTCCAGCATGAAGTCAATCCCTGACATAATGATAATGCATTTTAA
TGTGCTTGGTGCTAGCATGGAACACTGTGTTGTTTGCAGTTTCCAATGCGCTCAAACTGT
CAGTGAAACAAAAACAAGGCCTTTGAGATAAACACAATCAGGCACCAGTGTGAAAGCTGC
CCCATACTGTGACCCCAATAGGCTACTTCTTGCTAAACCACTAAATGCATGAGCTGCCAA
GCATGAAGCAAAAACAACTCATGGATAGCGAAACATATGCTTAACTGCATACCTATGCTA
AGTCGACGTGCTACATAAACATCTCCTCAAGGTGAGACTGCAAGCTTAATCCCTCGACTA
TGCATAAATCTGGTTATATGCCAGACTACAAATTGAATGTCTAGCCTTAAACAAGGCACC
ACCAACAGCCTCCCAATACACAGTGGCACA
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 42
Score (bit) 42.7
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915715|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_H10.
         (510 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    43   0.001
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    32   2.3  
sp|P32710|NRFE_ECOLI Cytochrome c-type biogenesis protein nrfE O...    30   8.6  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 17/42 (40%), Positives = 29/42 (69%)
 Frame = -3

Query: 217  LCLSQRPCFCFTDSLSALETANNTVFHASTKHIKMHYHYVRD 92
            L L Q+    + DS SA++ + N+++HA TKHI + YH++R+
Sbjct: 1244 LGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIRE 1285


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
            PE=1 SV=3
          Length = 1409

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 205  QRPCFCFTDSLSALETANNTVFHASTKHIKMHYHYVRD 92
            + P   + D+   +  ANN   H   KHI + YH+ R+
Sbjct: 1323 ENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFARE 1360


>sp|P32710|NRFE_ECOLI Cytochrome c-type biogenesis protein nrfE
           OS=Escherichia coli (strain K12) GN=nrfE PE=3 SV=2
          Length = 552

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -2

Query: 344 LSICFAIHELFLLHAWQLMHLVV*QEV---AYWGHSMGQLSHWCLIVFISKALFLFH 183
           L+ CF I +  +++  Q  + ++  E+   A WG   G L  W L++    ALF +H
Sbjct: 40  LTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLWVLLLSAWSALFAWH 96
tr_hit_id A5AKW8
Definition tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 106
Score (bit) 50.8
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915715|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_H10.
         (510 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis...    51   4e-05
tr|Q2QQK0|Q2QQK0_ORYSJ Retrotransposon protein, putative, unclas...    47   5e-05
tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis...    50   6e-05
tr|Q2QP29|Q2QP29_ORYSJ Retrotransposon protein, putative, unclas...    47   7e-05
tr|Q8L4Q1|Q8L4Q1_ORYSJ Putative copia-type pol polyprotein OS=Or...    49   1e-04
tr|Q33B92|Q33B92_ORYSJ Retrotransposon protein, putative, unclas...    49   1e-04
tr|A5C4L4|A5C4L4_VITVI Putative uncharacterized protein OS=Vitis...    49   1e-04
tr|A5B8U3|A5B8U3_VITVI Putative uncharacterized protein OS=Vitis...    49   1e-04
tr|A5AJH0|A5AJH0_VITVI Putative uncharacterized protein OS=Vitis...    49   1e-04
tr|A5BNY7|A5BNY7_VITVI Putative uncharacterized protein OS=Vitis...    49   1e-04
tr|Q9SN55|Q9SN55_ARATH Putative retrotransposon polyprotein OS=A...    48   2e-04
tr|Q9C739|Q9C739_ARATH Copia-type polyprotein, putative OS=Arabi...    48   2e-04
tr|Q8W5K4|Q8W5K4_ORYSA Putative Zea mays retrotransposon Opie-2 ...    48   2e-04
tr|Q7XLY1|Q7XLY1_ORYSA OSJNBa0042I15.9 protein OS=Oryza sativa G...    48   2e-04
tr|Q7XH54|Q7XH54_ORYSJ Retrotransposon protein, putative, Ty1-co...    48   2e-04
tr|O81617|O81617_ARATH F8M12.17 protein OS=Arabidopsis thaliana ...    48   2e-04
tr|A5BJX0|A5BJX0_VITVI Putative uncharacterized protein OS=Vitis...    48   2e-04
tr|Q2QQZ3|Q2QQZ3_ORYSJ Retrotransposon protein, putative, unclas...    48   3e-04
tr|A5BNR5|A5BNR5_VITVI Putative uncharacterized protein OS=Vitis...    48   3e-04
tr|Q9SXB2|Q9SXB2_ARATH T28P6.8 protein OS=Arabidopsis thaliana G...    47   4e-04
tr|Q9SFE1|Q9SFE1_ARATH T26F17.17 OS=Arabidopsis thaliana PE=4 SV=1     47   4e-04
tr|Q9M2D1|Q9M2D1_ARATH Copia-type polyprotein OS=Arabidopsis tha...    47   4e-04
tr|Q9C536|Q9C536_ARATH Copia-type polyprotein, putative OS=Arabi...    47   4e-04
tr|Q7XSG0|Q7XSG0_ORYSJ OSJNBb0051N19.3 protein OS=Oryza sativa s...    47   4e-04
tr|Q7XET2|Q7XET2_ORYSJ Retrotransposon protein, putative, unclas...    47   4e-04
tr|Q75K50|Q75K50_ORYSJ Putative retrotransposon protein OS=Oryza...    47   4e-04
tr|Q10JS8|Q10JS8_ORYSJ Retrotransposon protein, putative, unclas...    47   4e-04
tr|Q75LG0|Q75LG0_ORYSJ Putative integrase OS=Oryza sativa subsp....    47   5e-04
tr|Q10GK7|Q10GK7_ORYSJ Retrotransposon protein, putative, unclas...    47   5e-04
tr|Q8S5H3|Q8S5H3_ORYSJ Putative retroelement OS=Oryza sativa sub...    47   7e-04

>tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_027864 PE=4 SV=1
          Length = 1300

 Score = 50.8 bits (120), Expect = 4e-05
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 19/106 (17%)
 Frame = -3

Query: 325  SMSCFCFMLGSSCI*WFSKK*P-IGVTVWGSFHTGA*LCLSQR----------------- 200
            S + + FMLGS  I W SK+ P + ++   + +  A +   +                  
Sbjct: 1154 STTGYVFMLGSGAISWCSKRQPTVSLSTTEAEYRAAAMATQESMWLIRLMNDLHQLVDYA 1213

Query: 199  -PCFCFTDSLSALETANNTVFHASTKHIKMHYHYVRD*LHAGEMSL 65
             P +C  D+ SA+  A N VFHA TKH+++HYH++R+ +   E+ L
Sbjct: 1214 VPLYC--DNQSAVRLAENPVFHARTKHVEVHYHFIREKVLKEEVEL 1257


>tr|Q2QQK0|Q2QQK0_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g30770 PE=4 SV=2
          Length = 776

 Score = 47.4 bits (111), Expect(2) = 5e-05
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
 Frame = -3

Query: 325 SMSCFCFMLGSSCI*WFSKK*P-IGVTVWGSFHTGA*LCLSQR----------------- 200
           S S  C  LG+S I W S+K   +  +   S +  A  C SQ                  
Sbjct: 636 STSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGLTFEKV 695

Query: 199 PCFCFTDSLSALETANNTVFHASTKHIKMHYHYVRD*LHAGEMSLITVLRALQLS 35
           P FC  D+ SA+  A N V H+ TKHI + +H++RD +  G++ L  +   LQ++
Sbjct: 696 PLFC--DNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVELQFLDTKLQIA 748



 Score = 23.1 bits (48), Expect(2) = 5e-05
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
 Frame = -1

Query: 381 CLC-----STST*HRYAVKHMFRY 325
           CLC     ST   HR AVK + RY
Sbjct: 577 CLCARFQASTRASHRQAVKRIMRY 600


>tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_007301 PE=4 SV=1
          Length = 973

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 19/106 (17%)
 Frame = -3

Query: 325  SMSCFCFMLGSSCI*WFSKK*P-IGVTVWGSFHTGA*LCLSQR----------------- 200
            S + + FMLGS  I W SK+ P + +    + +  A +   +                  
Sbjct: 827  STTGYVFMLGSGAISWCSKRQPTVSLLTTEAEYRAAAMAAQESTWLIRLMNDLHQLVDYA 886

Query: 199  -PCFCFTDSLSALETANNTVFHASTKHIKMHYHYVRD*LHAGEMSL 65
             P +C  D+ SA+  A N VFHA TKH+++HYH++R+ +   E+ L
Sbjct: 887  VPLYC--DNQSAVRLAENPVFHARTKHVEVHYHFIREKVLEEEVEL 930


>tr|Q2QP29|Q2QP29_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os12g35880 PE=4 SV=1
          Length = 1417

 Score = 47.4 bits (111), Expect(2) = 7e-05
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
 Frame = -3

Query: 325  SMSCFCFMLGSSCI*WFSKK*P-IGVTVWGSFHTGA*LCLSQR----------------- 200
            S S  C  LG+S I W S+K   +G +   S +  A  C SQ                  
Sbjct: 1277 STSGTCHFLGTSLIGWSSRKQSSVGQSTAESEYVAAASCCSQILWLLSTLKDYGLTFEKV 1336

Query: 199  PCFCFTDSLSALETANNTVFHASTKHIKMHYHYVRD*LHAGEMSLITVLRALQLS 35
            P FC  D+ SA+  A N V ++ TKHI + +H++RD +  G++ L  +   LQ++
Sbjct: 1337 PLFC--DNTSAINIAKNPVQYSRTKHIDIRFHFLRDHVEKGDVELQFLDTKLQIA 1389



 Score = 22.7 bits (47), Expect(2) = 7e-05
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
 Frame = -1

Query: 381  CLC-----STST*HRYAVKHMFRY 325
            CLC     S  T HR AVK + RY
Sbjct: 1218 CLCARFQASPRTSHRQAVKRIMRY 1241


>tr|Q8L4Q1|Q8L4Q1_ORYSJ Putative copia-type pol polyprotein OS=Oryza
            sativa subsp. japonica GN=OSJNBb0072F04.14 PE=4 SV=1
          Length = 845

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
 Frame = -3

Query: 325  SMSCFCFMLGSSCI*WFSKK*P-IGVTVWGSFHTGA*LCLSQR----------------- 200
            S S  C  LG+S I W S+K   +  +   S +  A  C SQ                  
Sbjct: 705  STSGICHFLGTSLIAWSSRKQSSVAQSTSESEYVAAASCCSQILWLLSTLKYYSLTFEKV 764

Query: 199  PCFCFTDSLSALETANNTVFHASTKHIKMHYHYVRD*LHAGEMSLITVLRALQLS 35
            P FC  D+ SA+  A N V H+ TKHI + +H++RD +  G++ L  + + LQL+
Sbjct: 765  PLFC--DNTSAINIAKNPVQHSRTKHINICFHFLRDHVEKGDVELQFLDKMLQLA 817


>tr|Q33B92|Q33B92_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os10g04040 PE=4 SV=2
          Length = 809

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
 Frame = -3

Query: 325  SMSCFCFMLGSSCI*WFSKK*P-IGVTVWGSFHTGA*LCLSQR----------------- 200
            S S  C  LG+S I W S+K   +  +   S +  A  C SQ                  
Sbjct: 669  STSGICHFLGTSLIAWSSRKQSSVAQSTSESEYVAAASCCSQILWLLSTLKYYSLTFEKV 728

Query: 199  PCFCFTDSLSALETANNTVFHASTKHIKMHYHYVRD*LHAGEMSLITVLRALQLS 35
            P FC  D+ SA+  A N V H+ TKHI + +H++RD +  G++ L  + + LQL+
Sbjct: 729  PLFC--DNTSAINIAKNPVQHSRTKHINICFHFLRDHVEKGDVELQFLDKMLQLA 781


>tr|A5C4L4|A5C4L4_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_014745 PE=4 SV=1
          Length = 1472

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = -3

Query: 313  FCFMLGSSCI*WFSKK*PIGV--TVWGSFHTGA*LC----LSQRPCFCFTDSLSALETAN 152
            +C  LG S I W SK+       +V   +      C    L Q P   + D+ +AL  A 
Sbjct: 1346 YCVFLGPSLISWRSKRQKTMSLSSVEAKYRAMIGACYLGVLHQEPALLYCDNKAALHIAA 1405

Query: 151  NTVFHASTKHIKMHYHYVRD*LHAGEMSLITVLRALQL 38
            N +FH  T+HI+M  HY+RD +  G +    V  A QL
Sbjct: 1406 NPIFHERTRHIEMDCHYIRDKIQDGSIITRHVSSAHQL 1443


>tr|A5B8U3|A5B8U3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008389 PE=4 SV=1
          Length = 336

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 25/58 (43%), Positives = 32/58 (55%)
 Frame = -3

Query: 211 LSQRPCFCFTDSLSALETANNTVFHASTKHIKMHYHYVRD*LHAGEMSLITVLRALQL 38
           L Q P     D+ +AL  A N VFH  T+HI+M YHY+RD +  G +    V  A QL
Sbjct: 250 LHQEPALLHCDNKAALHIATNPVFHERTRHIEMDYHYIRDKIQDGSIITRHVSSAHQL 307


>tr|A5AJH0|A5AJH0_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_000988 PE=4 SV=1
          Length = 887

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
 Frame = -3

Query: 325  SMSCFCFMLGSSCI*WFSKK*PIGV--TVWGSFHTGA*LCLSQRPCF-CFTDSLSALETA 155
            S S +CF  GS+   W SKK  +    TV  +    A L + Q+       D+ +A+  A
Sbjct: 758  STSGYCFSFGSAIFSWCSKKQEVIAQSTVEENMKLMADLFMEQKESTQILVDNQAAISIA 817

Query: 154  NNTVFHASTKHIKMHYHYVRD*LHAGEMSLI 62
            NN VFH  TKH K+  +++R+    GE+ L+
Sbjct: 818  NNPVFHGKTKHFKLKLYFLREVQKEGEIQLV 848


>tr|A5BNY7|A5BNY7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_040460 PE=4 SV=1
          Length = 1293

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
 Frame = -3

Query: 334  VSLSMSCFCFMLGSSCI*WFSKK*PIGVTV--------------------WGSFHTGA*L 215
            VS S + +CF+LGSS I W SKK    V                      W     G   
Sbjct: 926  VSQSTTGYCFLLGSSLIYWRSKKQTFVVRSSIEAEYCALADTTFEFIWLRWLLKDLGV-S 984

Query: 214  CLSQRPCFCFTDSLSALETANNTVFHASTKHIKMHYHYVRD*LHAGEMSLITVLRALQLS 35
              S  P +C  D+ SA+  A+N VFH  TKHI++  H++R  L  G + L +V    QL+
Sbjct: 985  TSSTTPLYC--DNQSAIHIAHNDVFHERTKHIEIDCHFIRYNLVRGALKLFSVSSKDQLA 1042