NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915720
Clone id YMU001_000076_A06
Library
Length 346
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000076_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GATTCTGTGCAGCGTTTGTCAATGGATCTGTGATGTGCTTGAAGCAAATGGGCTGCGCAG
TCAAAGATGGCGCAGCACGGTTTGCGAGCGCACTGTGAAATGCAGGCAATGCACGAGCGG
TAACAGGAACTGGAGTGGGCGCGGAAGGGACTGTGGCCGGCCTCTGAGAAGCGGCAGCCC
TGGCATGAGTGGAAGATGCAGATGAGGAGGAAGACGTCGAAGACACAGACCGCAAGGCAT
GAAGACCTGGCATTCTGCGCTCTTCTTCTCACTCTCTCAATTCGAATTGCAACTGTCCAG
TCCAAGAACCGATCAAGCTACTTGGTTGTGGCTAGAGAATCCCTCT
■■Homology search results ■■ -
sp_hit_id Q68LP1
Definition sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus
Align length 35
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915720|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_A06.
         (346 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus no...    34   0.26 
sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus mus...    34   0.26 
sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sa...    34   0.26 
sp|Q64507|KRA51_MOUSE Keratin-associated protein 5-1 OS=Mus musc...    33   0.34 
sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus ...    33   0.57 
sp|Q39635|Y38K_CORSE Uncharacterized 38.1 kDa protein OS=Corydal...    32   0.98 
sp|Q701N2|KRA55_HUMAN Keratin-associated protein 5-5 OS=Homo sap...    31   1.7  
sp|P56679|IBBB_PEA Seed trypsin/chymotrypsin inhibitor IVB OS=Pi...    31   1.7  
sp|Q9D5Z7|KRA52_MOUSE Keratin-associated protein 5-2 OS=Mus musc...    31   2.2  
sp|P60368|KR102_HUMAN Keratin-associated protein 10-2 OS=Homo sa...    31   2.2  
sp|Q2TA51|KRA55_MOUSE Keratin associated protein 5-5 OS=Mus musc...    30   2.9  
sp|P17594|POLG_EMCVD Genome polyprotein OS=Encephalomyocarditis ...    30   3.7  
sp|P17593|POLG_EMCVB Genome polyprotein OS=Encephalomyocarditis ...    30   3.7  
sp|Q62220|KRA54_MOUSE Keratin-associated protein 5-4 OS=Mus musc...    30   3.7  
sp|Q9BYR0|KRA47_HUMAN Keratin-associated protein 4-7 OS=Homo sap...    30   3.7  
sp|Q9BYQ5|KRA46_HUMAN Keratin-associated protein 4-6 OS=Homo sap...    30   4.9  
sp|Q6IE52|MUG2_RAT Murinoglobulin-2 OS=Rattus norvegicus GN=Mug2...    29   6.4  
sp|Q9BYQ9|KRA48_HUMAN Keratin-associated protein 4-8 OS=Homo sap...    29   6.4  
sp|Q76N89|HECW1_HUMAN E3 ubiquitin-protein ligase HECW1 OS=Homo ...    29   6.4  
sp|Q9N0Z4|AT11B_RABIT Probable phospholipid-transporting ATPase ...    29   8.3  
sp|Q9Y2G3|AT11B_HUMAN Probable phospholipid-transporting ATPase ...    29   8.3  
sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A...    29   8.3  
sp|P08668|VGLM_HANTV Envelope glycoprotein OS=Hantaan virus (str...    29   8.3  
sp|P16853|VGLM_HANTL Envelope glycoprotein OS=Hantaan virus (str...    29   8.3  
sp|P16493|VGLM_HANTH Envelope glycoprotein OS=Hantaan virus (str...    29   8.3  

>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus
           norvegicus GN=Mib2 PE=2 SV=2
          Length = 971

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 130
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKH 124


>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus
           musculus GN=Mib2 PE=1 SV=2
          Length = 973

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 130
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKH 124


>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo
           sapiens GN=MIB2 PE=1 SV=3
          Length = 1013

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 130
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 148 ICDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNKH 182


>sp|Q64507|KRA51_MOUSE Keratin-associated protein 5-1 OS=Mus
           musculus GN=Krtap5-1 PE=2 SV=1
          Length = 230

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -3

Query: 203 ICIFHSCQGCRFSEAGHSPFRAHSSSCYRSCIACISQCARKPCCAIFDCA 54
           +C   SC GC  S  G         SC  SC  C S C +  CC +  C+
Sbjct: 58  VCSCSSCGGCGSSCGG-------CGSCGSSCGGCGSSCCKPVCCCVPVCS 100


>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus
           gallus GN=MIB2 PE=2 SV=1
          Length = 954

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 130
           ICD  + +G+R  RW+  +C     C QC   N++
Sbjct: 90  ICDCCKKHGIRGMRWKCKMCFDYDLCTQCYMNNKH 124


>sp|Q39635|Y38K_CORSE Uncharacterized 38.1 kDa protein OS=Corydalis
           sempervirens PE=2 SV=1
          Length = 338

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = +1

Query: 58  QSKMAQHGLRAHCEMQAMHER*QELEW------ARKGLWPASEKRQPWHEWKMQMR 207
           Q KM + GL  H    A  +R Q  +W      AR GLW +S   +PW EW+   R
Sbjct: 283 QEKMLKKGLAWH--YTAYDKRPQLSKWEEKARAARVGLWASSNPEKPW-EWRKNKR 335


>sp|Q701N2|KRA55_HUMAN Keratin-associated protein 5-5 OS=Homo
           sapiens GN=KRTAP5-5 PE=2 SV=2
          Length = 237

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
 Frame = -3

Query: 185 CQGCRFSEAGHSPFRAHSSSCYRSCIA---CISQCARKPCCAIFDC 57
           C  C  S+ G   +    SSC + C     C S C +  CC  + C
Sbjct: 139 CGSCGGSKGGCGSYGCSQSSCCKPCCCSSGCGSSCCQSSCCKPYCC 184


>sp|P56679|IBBB_PEA Seed trypsin/chymotrypsin inhibitor IVB OS=Pisum
           sativum PE=1 SV=2
          Length = 72

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/77 (23%), Positives = 31/77 (40%)
 Frame = -3

Query: 254 NARSSCLAVCVFDVFLLICIFHSCQGCRFSEAGHSPFRAHSSSCYRSCIACISQCARKPC 75
           + +S+C   C       +C   +   CR  + G +        C+ +C++CI   +  P 
Sbjct: 3   DVKSACCDTC-------LCTKSNPPTCRCVDVGET--------CHSACLSCICAYSNPPK 47

Query: 74  CAIFDCAAHLLQAHHRS 24
           C  FD      +A H S
Sbjct: 48  CQCFDTQKFCYKACHNS 64


>sp|Q9D5Z7|KRA52_MOUSE Keratin-associated protein 5-2 OS=Mus
           musculus GN=Krtap5-2 PE=2 SV=1
          Length = 189

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
 Frame = -3

Query: 200 CIFHSCQGCRFSEAGHSPFRAHSSSCYRSCI---ACISQCARKPCCAIFDCAA 51
           C    C+ C    +   P    SS C  SC     C S C  KPCC    C A
Sbjct: 130 CQSSCCKPCCCQSSCCKPCCCQSSCCQSSCCKPCCCQSSCC-KPCCCQSSCCA 181


>sp|P60368|KR102_HUMAN Keratin-associated protein 10-2 OS=Homo
           sapiens GN=KRTAP10-2 PE=2 SV=1
          Length = 255

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
 Frame = -3

Query: 251 ARSSCLAVCVFDVFL-LICIFHSCQGCRFS---EAGHSPFRAHSSSCYRSCIACISQCAR 84
           A SSC   C   V    +C   +C     S   ++   P    SS C +SC  C+S C +
Sbjct: 132 ASSSCQQSCRVPVCCKAVCCVPTCSESSSSCCQQSSCQPACCTSSPCQQSC--CVSVCCK 189

Query: 83  KPCCAIFDC 57
             CC    C
Sbjct: 190 PVCCKSICC 198
tr_hit_id Q5F665
Definition tr|Q5F665|Q5F665_NEIG1 Putative uncharacterized protein OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Align length 40
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915720|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_A06.
         (346 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5F665|Q5F665_NEIG1 Putative uncharacterized protein OS=Neiss...    35   2.4  
tr|B4RPD0|B4RPD0_NEIG2 Putative uncharacterized protein OS=Neiss...    35   2.4  
tr|Q08AY2|Q08AY2_XENLA LOC100158387 protein OS=Xenopus laevis GN...    34   4.1  
tr|B1WBC4|B1WBC4_XENLA LOC100158426 protein OS=Xenopus laevis GN...    34   4.1  
tr|B1H2P9|B1H2P9_XENTR Mib2 protein OS=Xenopus tropicalis GN=mib...    34   4.1  
tr|B2RUG2|B2RUG2_MOUSE Mib2 protein OS=Mus musculus GN=Mib2 PE=2...    34   4.1  
tr|A2A9P9|A2A9P9_MOUSE Mindbomb homolog 2 (Drosophila) OS=Mus mu...    34   4.1  
tr|B4DZ57|B4DZ57_HUMAN cDNA FLJ58785, highly similar to Ubiquiti...    34   4.1  
tr|B4DEI6|B4DEI6_HUMAN cDNA FLJ60232, highly similar to Ubiquiti...    34   4.1  
tr|A2AGM8|A2AGM8_HUMAN Mindbomb homolog 2 (Drosophila) OS=Homo s...    34   4.1  
tr|A2AGM7|A2AGM7_HUMAN Mindbomb homolog 2 (Drosophila) OS=Homo s...    34   4.1  
tr|O27309|O27309_METTH Polyferredoxin OS=Methanobacterium thermo...    34   4.1  
tr|A4IF42|A4IF42_MOUSE ENSMUSG00000056885 protein (Fragment) OS=...    33   5.4  
tr|B6PQR9|B6PQR9_BRAFL Putative uncharacterized protein (Fragmen...    33   5.4  
tr|B6STR9|B6STR9_MAIZE Nuclease OS=Zea mays PE=2 SV=1                  33   7.1  
tr|B4G0V2|B4G0V2_MAIZE Putative uncharacterized protein OS=Zea m...    33   7.1  
tr|Q008W0|Q008W0_CIOIN Gamma-carboxyglutamic acid protein 4 OS=C...    33   7.1  

>tr|Q5F665|Q5F665_NEIG1 Putative uncharacterized protein
           OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
           GN=NGO1701 PE=4 SV=1
          Length = 151

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 203 ICIFHSCQGCRFSEAGHSPFRAHSSSCYRSCIACISQCAR 84
           +C+  +C+ C  +   HS   A   +CY SC+ CI +C +
Sbjct: 110 VCL-EACKQCAKACKEHSAHHAECKACYESCLDCIKECEK 148


>tr|B4RPD0|B4RPD0_NEIG2 Putative uncharacterized protein
           OS=Neisseria gonorrhoeae (strain NCCP11945) GN=NGK_2099
           PE=4 SV=1
          Length = 151

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 203 ICIFHSCQGCRFSEAGHSPFRAHSSSCYRSCIACISQCAR 84
           +C+  +C+ C  +   HS   A   +CY SC+ CI +C +
Sbjct: 110 VCL-EACKQCAKACKEHSAHHAECKACYESCLDCIKECEK 148


>tr|Q08AY2|Q08AY2_XENLA LOC100158387 protein OS=Xenopus laevis
           GN=LOC100158387 PE=2 SV=1
          Length = 916

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 130
           ICD  + +G+R  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGIRGMRWKCKVCFDYDLCTQCYMNNKH 124


>tr|B1WBC4|B1WBC4_XENLA LOC100158426 protein OS=Xenopus laevis
           GN=mib2 PE=2 SV=1
          Length = 951

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 130
           ICD  + +G+R  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGIRGMRWKCKVCFDYDLCTQCYMNNKH 124


>tr|B1H2P9|B1H2P9_XENTR Mib2 protein OS=Xenopus tropicalis GN=mib2
           PE=2 SV=1
          Length = 951

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 130
           ICD  + +G+R  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGIRGMRWKCKVCFDYDLCTQCYMNNKH 124


>tr|B2RUG2|B2RUG2_MOUSE Mib2 protein OS=Mus musculus GN=Mib2 PE=2
           SV=1
          Length = 946

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 130
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKH 124


>tr|A2A9P9|A2A9P9_MOUSE Mindbomb homolog 2 (Drosophila) OS=Mus
           musculus GN=Mib2 PE=4 SV=1
          Length = 921

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 130
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKH 124


>tr|B4DZ57|B4DZ57_HUMAN cDNA FLJ58785, highly similar to Ubiquitin
           ligase protein MIB2 (EC 6.3.2.-) OS=Homo sapiens PE=2
           SV=1
          Length = 1056

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 130
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 191 ICDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNKH 225


>tr|B4DEI6|B4DEI6_HUMAN cDNA FLJ60232, highly similar to Ubiquitin
           ligase protein MIB2 (EC 6.3.2.-) OS=Homo sapiens PE=2
           SV=1
          Length = 955

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 130
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNKH 124


>tr|A2AGM8|A2AGM8_HUMAN Mindbomb homolog 2 (Drosophila) OS=Homo
           sapiens GN=MIB2 PE=4 SV=1
          Length = 919

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 130
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNKH 124