BP915728 [AcEST]

BP915728
Clone id	YMU001_000076_B05
Library	YMU01
Length	588
Definition	Adiantum capillus-veneris mRNA. clone: YMU001_000076_B05.
Accession	BP915728
Tissue type	prothallium
Developmental stage	-
Contig ID	CL835Contig1
Sequence	TTTTTCATCAAAACTGTAAATGACGTAAATTAAAAAAGATGCTCATGGTTACTGAAGTAC AAAGCATGCTGTTTGTTTGCCTCTTTTTTTAGCTAAATGAAGTGCGAAGCATGTTGTTGA TTCCTCTCTTCAGCCTCCCTCACTTTCCAAGCTTCAAAGCTTATCATGCAAAGAAGTGCC TCAATTTGCATCCCTCTGGTAGCATTTGGTTGAACATTGCCTTGCAAACATGAGTTGATG TGAGCCGTGACTATGGGGCGGATAGGAGCCGCGACAAAATTCATCACTTGCAGAAAAGCC CAAGTGACCACAACGCTTCATGAACATGGAGAACCTGTCTTAGTGATCAGAAGCTGATTT GCAATTGTCTCGAGAACACGTGAAATCCCAAAATAACTCCAAGGTCCATAAATAGCAGAC CATACAGCTTAACTGTTGATTTCAACAGTCTGGTAGATCAAATTTTTCTGCAAAGCCTGT TTTCTGCATCTCAAGTAAAACGTCTTAAAGCTCGAGGAACAGACTCATCCTCAGTTTTTG CTTTCTTTACAGAAGACGACCGAATCTGAGCTTCAATCAACGGCCTCT
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	A3KNB6
Definition	sp\|A3KNB6\|ODR4_XENLA Protein odr-4 homolog OS=Xenopus laevis
Align length	112
Score (bit)	31.2
E-value	4.0
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP915728\|Adiantum capillus-veneris mRNA, clone: YMU001_000076_B05. (588 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|A3KNB6\|ODR4_XENLA Protein odr-4 homolog OS=Xenopus laevis GN=... 31 4.0 >sp\|A3KNB6\|ODR4_XENLA Protein odr-4 homolog OS=Xenopus laevis GN=odr4 PE=2 SV=1 Length = 446 Score = 31.2 bits (69), Expect = 4.0 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 14/112 (12%) Frame = +3 Query: 165 HAKKCLNLHPSGSIWLNIALQTVDVSRD---------YGADRSRDKIHHLQKSPSDHNA 317 HA + + P G + L + L T D+S+D + ++S K D + Sbjct: 75 HASQVGRMLPGGLMVLGVFLMTTPDLSKDAQTILRKLVFAVEKSSMKNRLWNFDEDDVSE 134 Query: 318 STWRTCLSDQKLICNCLENT*NPKITPRSI-----NSRPYSLTVDFNSLVD 458 T C S +K+ C + +PK TP+ NS LTVD N VD Sbjct: 135 RVTLHICSSTKKITCRTYDIN-DPKSTPKPADWKYQNSVLSWLTVDCNVRVD 185
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	B6NVG2
Definition	tr\|B6NVG2\|B6NVG2_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae
Align length	66
Score (bit)	33.5
E-value	9.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP915728\|Adiantum capillus-veneris mRNA, clone: YMU001_000076_B05. (588 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|B6NVG2\|B6NVG2_BRAFL Putative uncharacterized protein (Fragmen... 33 9.2 >tr\|B6NVG2\|B6NVG2_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_99571 PE=4 SV=1 Length = 591 Score = 33.5 bits (75), Expect = 9.2 Identities = 20/66 (30%), Positives = 27/66 (40%) Frame = +1 Query: 40 CSWLLKYKACCLFASFFSMKCEACCFLSSASLTFQASKLIMQRSASICIPLVAFG*TL 219 C W L +ACC C AC LS + F S+L + +++ L T Sbjct: 232 CKWTLSRQACC--------SSCSACFLVLSGTFVCFSPSQLYQRHLSTVSAQLTDCEPTQ 283 Query: 220 PCKHEL 237 P K EL Sbjct: 284 PAKTEL 289