NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915737
Clone id YMU001_000076_C05
Library
Length 438
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000076_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACATGCCTGTACGGGATTTCAAGATTTCTCTCATGACTGCTGTCCCTATCTTGAGCATCA
CCACAAAGCCACTCTTCCTCATCCCTCCGGTGAGACTCTTCCAGCGGTGATAAATAATGC
ATTTTCAGCTCAAATCTCTCGCTCTGAGACTGACGAGGCATACGTACCGCATGATCCCCT
TGAGAATGAAATAAGGATGTTGAAGATAGGCTTTCTCTATGATTCACAGAAGACATCCGC
TCCTGATAGAGCCAATCATCCTCTTCTTCTCTTTGTTGCAGCTCCTCTAGAAGAGATGGC
CGTTTAAGCTCAAATCTCTCGCTAAGAGACTGGTAAGGCAACCCTCTAATCTGCGGCTGC
TGATGATGCAACATAATCCTTCCAAGCATGTTTCCACCCGCGCTAGCCCTACTTGCAGCA
ACTGCCTCTCGGGACAGC
■■Homology search results ■■ -
sp_hit_id Q70EL1
Definition sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens
Align length 72
Score (bit) 32.0
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915737|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_C05.
         (438 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydro...    32   1.2  
sp|Q5R4R3|OGFD1_PONAB 2-oxoglutarate and iron-dependent oxygenas...    30   4.4  
sp|Q5UBV8|TNF15_MOUSE Tumor necrosis factor ligand superfamily m...    30   5.7  
sp|Q26648|TKB1_STRPU Tektin-B1 OS=Strongylocentrotus purpuratus ...    30   5.7  
sp|Q9JLG9|AIPL1_RAT Aryl-hydrocarbon-interacting protein-like 1 ...    30   5.7  
sp|Q924K1|AIPL1_MOUSE Aryl-hydrocarbon-interacting protein-like ...    30   5.7  
sp|Q8K3Y7|TNF15_RAT Tumor necrosis factor ligand superfamily mem...    29   7.5  
sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3...    29   7.5  
sp|Q2YBP9|PROA_NITMU Gamma-glutamyl phosphate reductase OS=Nitro...    29   9.8  
sp|Q8N543|OGFD1_HUMAN 2-oxoglutarate and iron-dependent oxygenas...    29   9.8  
sp|Q5ZKA3|NCM_CHICK Nucampholin homolog OS=Gallus gallus GN=NCM ...    29   9.8  
sp|O19179|GUC2D_CANFA Retinal guanylyl cyclase 1 OS=Canis famili...    29   9.8  

>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal
           hydrolase 54 OS=Homo sapiens GN=USP54 PE=1 SV=4
          Length = 1684

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +2

Query: 23  DFSHDCCPYLEHHHKATLPHPSGETLPAVINNAFSAQISRSETDEAYVPHDPLENEIRML 202
           D S +  PY   HH++ + H S ++   VI N  +  +S+S  D  ++  D   N+    
Sbjct: 394 DSSTESYPYKHSHHESVVSHFSSDSQGTVIYNVENDSMSQSSRDTGHLT-DSECNQKHTS 452

Query: 203 KIGFLYDSQKTS 238
           K G L + +++S
Sbjct: 453 KKGSLIERKRSS 464


>sp|Q5R4R3|OGFD1_PONAB 2-oxoglutarate and iron-dependent oxygenase
           domain-containing protein 1 OS=Pongo abelii GN=OGFOD1
           PE=2 SV=1
          Length = 542

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 128 LKMHYLSPLEESHRRDEEEWLCGDAQDRDSSH 33
           LK+H+L+P EE    D++E    D  +  +SH
Sbjct: 363 LKLHFLAPSEEDEMNDKKEAEAADITEEGTSH 394


>sp|Q5UBV8|TNF15_MOUSE Tumor necrosis factor ligand superfamily
           member 15 OS=Mus musculus GN=Tnfsf15 PE=2 SV=2
          Length = 252

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 436 CPERQLLQVGLA-RVETCLEGLCCIISSRRLEGCLTSLLARDLSLNG 299
           C  R   + GLA R + CL   CC++S   L G  T L+A  L + G
Sbjct: 22  CRHRPEARAGLAARSKACLALTCCLLSFPILAGLSTLLMAGQLRVPG 68


>sp|Q26648|TKB1_STRPU Tektin-B1 OS=Strongylocentrotus purpuratus
           PE=1 SV=1
          Length = 400

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -2

Query: 242 ERMSSVNHRESLSSTSLFHSQGDHAVRMPRQSQSERFELKMHYLSPLEESHRRDEEEWLC 63
           E  SS   RE++ ST    +Q D+ +   RQ+       ++H     E    +DE+EW  
Sbjct: 205 EMRSSQRLREAIHSTV---AQTDNDLEAQRQATEFALRKRIH-----EMKRAKDEDEWQK 256

Query: 62  GDAQDRDSSHERNL 21
            + ++  +  ERN+
Sbjct: 257 KNTEEEIAKQERNI 270


>sp|Q9JLG9|AIPL1_RAT Aryl-hydrocarbon-interacting protein-like 1
           OS=Rattus norvegicus GN=Aipl1 PE=2 SV=1
          Length = 328

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 248 YQERMSSVNHRESLSSTSLFHSQGDHAVRMPRQSQ-SERFELKMHYLSPLEESHRRDEEE 72
           YQ    ++N+ E + +  L H +G+   ++ R  Q + +++  +  L  L+   +  E E
Sbjct: 162 YQRETWNLNNEERMQAVPLLHGEGNRLYKLGRYDQAATKYQEAIVCLRNLQTKEKPWEVE 221

Query: 71  WL 66
           WL
Sbjct: 222 WL 223


>sp|Q924K1|AIPL1_MOUSE Aryl-hydrocarbon-interacting protein-like 1
           OS=Mus musculus GN=Aipl1 PE=2 SV=1
          Length = 328

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 248 YQERMSSVNHRESLSSTSLFHSQGDHAVRMPRQSQ-SERFELKMHYLSPLEESHRRDEEE 72
           YQ    ++N+ E + +  L H +G+   ++ R  Q + +++  +  L  L+   +  E E
Sbjct: 162 YQRETWNLNNEERMQAVPLLHGEGNRLYKLGRYDQAATKYQEAIVCLRNLQTKEKPWEVE 221

Query: 71  WL 66
           WL
Sbjct: 222 WL 223


>sp|Q8K3Y7|TNF15_RAT Tumor necrosis factor ligand superfamily member
           15 OS=Rattus norvegicus GN=Tnfsf15 PE=2 SV=1
          Length = 252

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 436 CPERQLLQVGLA-RVETCLEGLCCIISSRRLEGCLTSLLARDLSLNG 299
           C  R+  + GLA R + CL   CC++S   L G  T L+   L + G
Sbjct: 22  CRHRREARTGLAARSKACLALTCCLLSFPILAGLSTLLMTGQLRIPG 68


>sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3
           subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1
          Length = 1382

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 80  EEEWLCGDAQDRDSSHERNLEIPYR 6
           E+EW  G+ +D D SH R+ E P R
Sbjct: 915 EKEWRRGEGRDEDRSHRRDEERPRR 939


>sp|Q2YBP9|PROA_NITMU Gamma-glutamyl phosphate reductase
           OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB
           11849) GN=proA PE=3 SV=1
          Length = 421

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -2

Query: 188 HSQGDHAVRMPRQSQSERFELKMHYLSPLEESHRRDEEEWLCGDAQDRDSSHERNLE 18
           HS G  A    R         K   L+ +  + +RDE++ L  +A+D +++ ER LE
Sbjct: 11  HSIGREARAASRLIAKAETAAKNRALTQMAVAIKRDEQQLLAANARDVENAKERGLE 67


>sp|Q8N543|OGFD1_HUMAN 2-oxoglutarate and iron-dependent oxygenase
           domain-containing protein 1 OS=Homo sapiens GN=OGFOD1
           PE=1 SV=1
          Length = 542

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 128 LKMHYLSPLEESHRRDEEEWLCGDAQDRDSSH 33
           LK+H+L+P EE    D++E    D  +  +SH
Sbjct: 363 LKLHFLAPSEEDEMNDKKEAETTDITEEGTSH 394
tr_hit_id B1H1N5
Definition tr|B1H1N5|B1H1N5_XENLA Putative uncharacterized protein (Fragment) OS=Xenopus laevis
Align length 92
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915737|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_C05.
         (438 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1H1N5|B1H1N5_XENLA Putative uncharacterized protein (Fragmen...    37   0.49 
tr|A1L3I9|A1L3I9_XENLA LOC100037019 protein (Fragment) OS=Xenopu...    37   0.49 
tr|A9TDF6|A9TDF6_PHYPA Double-stranded RNA binding protein OS=Ph...    36   1.1  
tr|Q0UZY1|Q0UZY1_PHANO Putative uncharacterized protein OS=Phaeo...    35   2.4  
tr|Q16GI4|Q16GI4_AEDAE Putative uncharacterized protein (Fragmen...    34   3.2  
tr|B2UK25|B2UK25_RALPJ Polysaccharide deacetylase OS=Ralstonia p...    34   4.1  
tr|A7C9C8|A7C9C8_BURPI Polysaccharide deacetylase OS=Ralstonia p...    34   4.1  
tr|Q99C80|Q99C80_9POTV Coat protein (Fragment) OS=Papaya ringspo...    33   7.1  
tr|A3V0T4|A3V0T4_9RHOB NAD(+) synthase OS=Loktanella vestfoldens...    33   7.1  
tr|Q5KHG1|Q5KHG1_CRYNE Structural constituent of nuclear pore, p...    33   9.2  
tr|Q55T28|Q55T28_CRYNE Putative uncharacterized protein OS=Crypt...    33   9.2  
tr|B2AC73|B2AC73_PODAN Predicted CDS Pa_3_100 OS=Podospora anser...    33   9.2  

>tr|B1H1N5|B1H1N5_XENLA Putative uncharacterized protein (Fragment)
           OS=Xenopus laevis PE=2 SV=1
          Length = 508

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
 Frame = +2

Query: 44  PYLEHHHKATLPHPSGETLPAVINNAFSAQISRSETDEAYVPHDPL---ENEIRMLKI-- 208
           P+L  HH A LP P G+ +P      F  Q SRSE++    P  PL   ENE+ +L    
Sbjct: 260 PHLSPHHHAHLP-PPGQFVP------FQTQQSRSESNLHNSPLQPLQRIENEVELLGEHL 312

Query: 209 ---GFLYDSQKTSAPDRANHPLLLFVAAPLEE 295
              GF Y     +A  + + PL      PL +
Sbjct: 313 PVGGFTYPPSAHAATLQPSAPLQFITHDPLHQ 344


>tr|A1L3I9|A1L3I9_XENLA LOC100037019 protein (Fragment) OS=Xenopus
           laevis GN=LOC100037019 PE=2 SV=1
          Length = 496

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
 Frame = +2

Query: 44  PYLEHHHKATLPHPSGETLPAVINNAFSAQISRSETDEAYVPHDPL---ENEIRMLKI-- 208
           P+L  HH A LP P G+ +P      F  Q SRSE++    P  PL   ENE+ +L    
Sbjct: 248 PHLSPHHHAHLP-PPGQFVP------FQTQQSRSESNLHNSPLQPLQRIENEVELLGEHL 300

Query: 209 ---GFLYDSQKTSAPDRANHPLLLFVAAPLEE 295
              GF Y     +A  + + PL      PL +
Sbjct: 301 PVGGFTYPPSAHAATLQPSAPLQFITHDPLHQ 332


>tr|A9TDF6|A9TDF6_PHYPA Double-stranded RNA binding protein
           OS=Physcomitrella patens subsp. patens GN=DRB1503 PE=4
           SV=1
          Length = 1053

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -2

Query: 167 VRMPRQSQSERFELKMHYLSPLEESHRRDEEEWLCGDA 54
           VR     + ER E+ + Y     + HRRDE+EWLCGD+
Sbjct: 647 VRPVAAMRRERHEVAVPY-----DDHRRDEDEWLCGDS 679


>tr|Q0UZY1|Q0UZY1_PHANO Putative uncharacterized protein
            OS=Phaeosphaeria nodorum GN=SNOG_02683 PE=4 SV=2
          Length = 2345

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -2

Query: 197  SLFHSQGDHAVRMPRQSQSERFELKMHYLSPL--EESHRRDEEEWLCGDAQDRDSSHERN 24
            SL   Q D A R  R+ Q  R E   H+   L  EE  RRDEE+    + Q RD    R 
Sbjct: 1178 SLTREQADKAEREHREEQDRRDEDDRHHREQLRLEEEARRDEEDRRRREQQARDDEARRA 1237

Query: 23   LEI 15
             EI
Sbjct: 1238 EEI 1240


>tr|Q16GI4|Q16GI4_AEDAE Putative uncharacterized protein (Fragment)
           OS=Aedes aegypti GN=AAEL014370 PE=4 SV=1
          Length = 373

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 206 SSTSLFHSQGDHAVRMPRQSQSERFELKMHYLSPLEESHRRDE 78
           S+TSL  S G HA  +PR S S     + H+  P + SH++ +
Sbjct: 6   STTSLSSSSGTHAATLPRPSSSGHHHQRHHHQLPPQYSHQQQQ 48


>tr|B2UK25|B2UK25_RALPJ Polysaccharide deacetylase OS=Ralstonia
           pickettii (strain 12J) GN=Rpic_4842 PE=3 SV=1
          Length = 712

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 62  HKATLPHPSGETLPAVINNAFSAQISRSETDEAYVP--HDPLENEIRMLK 205
           H   L +P G  LPA   + + A++ R ETD+ Y    HD L+  I +++
Sbjct: 181 HHGVLGNPQGNELPAAGTHEYLAKLGRYETDDEYRKRVHDDLKRSIDLIE 230


>tr|A7C9C8|A7C9C8_BURPI Polysaccharide deacetylase OS=Ralstonia
           pickettii 12D GN=Rpic12DDRAFT_4985 PE=3 SV=1
          Length = 727

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 62  HKATLPHPSGETLPAVINNAFSAQISRSETDEAYVP--HDPLENEIRMLK 205
           H   L +P G  LPA   + + A++ R ETD+ Y    HD L+  I +++
Sbjct: 196 HHGVLGNPQGNELPAAGTHEYLAKLGRYETDDEYRKRVHDDLKRSIDLIE 245


>tr|Q99C80|Q99C80_9POTV Coat protein (Fragment) OS=Papaya ringspot
           virus GN=CP PE=2 SV=1
          Length = 285

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +2

Query: 44  PYLEHHHKATLPHPSGETLPAVINNAFSAQISRSETDEAYVPHDPLE---NEIRMLKIGF 214
           P +EH       HPS   + A  +NA  A I++    E Y+P   ++    +I + +  F
Sbjct: 166 PLIEH------AHPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAF 219

Query: 215 LYDSQKTSAPDRANHPLLLFVAAPL 289
            +    +  PDRA    +   AA L
Sbjct: 220 DFYEVNSKTPDRAREAHMQMKAAAL 244


>tr|A3V0T4|A3V0T4_9RHOB NAD(+) synthase OS=Loktanella vestfoldensis
           SKA53 GN=SKA53_08994 PE=3 SV=1
          Length = 553

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +2

Query: 35  DCCPYLEHHHKATLPHPSGETL-PAVINNAFSAQISRSE-TDEAYVPHDPLENEIRMLKI 208
           D C +   HH+  +  P+G+ + PA+I+   SA++   +  D++  P+D L+  + ML  
Sbjct: 432 DICRWRNAHHRDWMQGPAGQVIPPAIIDKPPSAELRPDQRDDDSLPPYDVLDGILAMLVD 491

Query: 209 G 211
           G
Sbjct: 492 G 492


>tr|Q5KHG1|Q5KHG1_CRYNE Structural constituent of nuclear pore,
           putative OS=Cryptococcus neoformans GN=CNE00190 PE=4
           SV=1
          Length = 2076

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 15/61 (24%)
 Frame = +2

Query: 77  PHPSG--------ETLP-----AVIN--NAFSAQISRSETDEAYVPHDPLENEIRMLKIG 211
           PHP G        E +P     A++N   AF+++ S+S+++ +   HDP+++E+ +  +G
Sbjct: 664 PHPLGVLWDFVNCENVPLHLKAAILNAITAFTSRPSQSQSEGSITTHDPMDDEVLVQSVG 723

Query: 212 F 214
           F
Sbjct: 724 F 724