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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915748
Clone id YMU001_000076_D04
Library
Length 528
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000076_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TACAACCTCACATATTTAACCACATGTTAGTGAACCCAAAACCTCATAAAATATTGGGTT
GTTATACAGACTACGCTTGAAGATCATATTATCCAGCTCCTGGAAGTTGCGGAAAAATCA
TCTGAGCCATTTCTCCTTCAATACACCTCATAAAAGTAACACCTGCTCCAGCTTATATAC
TGCATCTGAAAAGCAAAGTCCTTCCATAACCACTTATCCAAACAGCAACCGAGACAAACA
TGCAAGAGCAATCAATTTCAATATCATTGACCAGAGCACAAGCACCAGAGGATAACACAA
AATTCATTTTTGTCCCTTCACTAGCGAATCCAGTTCGGTCGCAACTATCATGTTGCCAAA
AGAGCCTCAATTTGTGCTATACTGTCTTCCTCCTTCTTCAACGTGGGAGTCCCATTTAGT
TCTTCAAACATGTCATGATTCCATCTGTCGGTGACCACCGCAACCCCCCCTGGATTTCTT
CTTCCGATATCAAACCGTGCTGCTCCTCGGTCCGCATCTCCAGTGTAC
■■Homology search results ■■ -
sp_hit_id Q6FQG3
Definition sp|Q6FQG3|BSP1_CANGA Protein BSP1 OS=Candida glabrata
Align length 70
Score (bit) 32.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915748|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_D04.
         (528 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FQG3|BSP1_CANGA Protein BSP1 OS=Candida glabrata GN=BSP1 PE...    32   1.9  
sp|Q54SY5|Y5150_DICDI Putative uncharacterized protein DDB_G0282...    32   2.4  
sp|Q00546|TENR_CHICK Tenascin-R OS=Gallus gallus GN=TNR PE=1 SV=1      32   2.4  
sp|Q04545|YMI1_YEAST Zinc finger protein YML081W OS=Saccharomyce...    30   5.4  
sp|Q6BTC8|DOT1_DEBHA Histone-lysine N-methyltransferase, H3 lysi...    30   5.4  
sp|Q9SJ22|CESA9_ARATH Probable cellulose synthase A catalytic su...    30   5.4  
sp|A0AJU0|CARB_LISW6 Carbamoyl-phosphate synthase large chain OS...    30   5.4  
sp|Q8Y665|CARB_LISMO Carbamoyl-phosphate synthase large chain OS...    30   5.4  
sp|Q71YI1|CARB_LISMF Carbamoyl-phosphate synthase large chain OS...    30   5.4  
sp|Q92AH3|CARB_LISIN Carbamoyl-phosphate synthase large chain OS...    30   5.4  
sp|Q089F2|CYOE2_SHEFN Protoheme IX farnesyltransferase 2 OS=Shew...    30   9.4  

>sp|Q6FQG3|BSP1_CANGA Protein BSP1 OS=Candida glabrata GN=BSP1 PE=3
           SV=1
          Length = 525

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +2

Query: 32  EPKTS*NIGLLYRLRLKIILSSSWKLRKNHLSHFSFNTPHKSNTCSSLYTASEKQSPSIT 211
           E K + N+  L  ++LK    S  K++     HF  N+P K     S+ ++ E    S++
Sbjct: 237 ELKPTRNVDFLESVQLKSPPQSPSKMKTIEEKHFKLNSPKKDGFIVSVLSSEENSRSSLS 296

Query: 212 TYPNSNRDKH 241
             P++  + H
Sbjct: 297 EKPSNEGNYH 306


>sp|Q54SY5|Y5150_DICDI Putative uncharacterized protein DDB_G0282129
           OS=Dictyostelium discoideum GN=DDB_G0282129 PE=4 SV=1
          Length = 765

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
 Frame = +2

Query: 92  SSSWKLRKNHLSHFSFNTPHKSNTCSSLYTASEKQSPSITTYPNSNRDKHARAINFNIID 271
           +SS K +  H          + N   ++ T+S   + +I  YPNSN        + NI  
Sbjct: 237 TSSNKFKHQHNQQAYNQNLSEINNSRNVTTSSVNANSNINPYPNSNS-------SINITT 289

Query: 272 QSTSTRG*HKIHFCPFTSESSSVATIMLPKEPQFVLYCLPPSS-TWESHLVLQTCHDSIC 448
            +T+T   ++I +      SS+  +++L    +   Y  P SS   +S L++ T      
Sbjct: 290 TTTTTTN-NEILWTTTKPTSSTKHSVILSPPKKIDSYDSPQSSPPRQSSLLISTSS---- 344

Query: 449 R*PPQPPL 472
             PP PPL
Sbjct: 345 --PPSPPL 350


>sp|Q00546|TENR_CHICK Tenascin-R OS=Gallus gallus GN=TNR PE=1 SV=1
          Length = 1353

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
 Frame = +3

Query: 213 LIQTATETNMQEQSISISLTRAQAPEDNTKFIFVPS--LANPV-----RSQLSCCQKSLN 371
           L+  +TET     SIS+S T+A  P D+ +  F P+  +A+ V      SQL+  +    
Sbjct: 692 LVTASTET-----SISLSWTKAMGPIDHYRVTFTPASGMASEVTVSRNESQLTLSELEPG 746

Query: 372 LCYTVFLLLQRG 407
             YT+ ++ +RG
Sbjct: 747 TEYTISIIAERG 758


>sp|Q04545|YMI1_YEAST Zinc finger protein YML081W OS=Saccharomyces
           cerevisiae GN=YML081W PE=1 SV=1
          Length = 1251

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +2

Query: 89  LSSSWKLRKNHLSHFSFNTPHKSNTCSSLYTASEKQSPSITTYPNSNRDKHARAINFNII 268
           + +  KL  NH +   FN  H  N      T SE ++       N NRD H  A  F  +
Sbjct: 472 IDNDLKLNINHFNDIGFNNLHPQNPT----THSEPRNMH-----NENRDMHRSASKFQSV 522

Query: 269 DQSTSTR 289
            ++ S R
Sbjct: 523 SENISPR 529


>sp|Q6BTC8|DOT1_DEBHA Histone-lysine N-methyltransferase, H3
           lysine-79 specific OS=Debaryomyces hansenii GN=DOT1 PE=3
           SV=2
          Length = 1172

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 218 PNSNRDKHARAINFNIIDQSTSTRG*HKIHFCPFTSESSSVAT 346
           P+SN D      + + +D S S    H I FC +T E SS+ T
Sbjct: 54  PDSNSDSSDPRSDSSCVDVSNSLAVSHPISFCNWTDEESSLLT 96


>sp|Q9SJ22|CESA9_ARATH Probable cellulose synthase A catalytic
           subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9
           PE=2 SV=1
          Length = 1088

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 21/87 (24%), Positives = 40/87 (45%)
 Frame = +2

Query: 122 LSHFSFNTPHKSNTCSSLYTASEKQSPSITTYPNSNRDKHARAINFNIIDQSTSTRG*HK 301
           L +   NT   ++  S LY+AS      + TY + + D ++   +  I+  ST     ++
Sbjct: 126 LYYMRLNTGRGTDEVSHLYSASPGSEVPLLTYCDEDSDMYSDR-HALIVPPSTGLG--NR 182

Query: 302 IHFCPFTSESSSVATIMLPKEPQFVLY 382
           +H  PFT   +S+ T  +  +    +Y
Sbjct: 183 VHHVPFTDSFASIHTRPMVPQKDLTVY 209


>sp|A0AJU0|CARB_LISW6 Carbamoyl-phosphate synthase large chain
            OS=Listeria welshimeri serovar 6b (strain ATCC 35897 /
            DSM 20650 / SLCC5334) GN=carB PE=3 SV=1
          Length = 1070

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 141  IHLIKVTPAPAYILHLKSKVLP*PLIQTATETNMQEQSISISLTRAQAPEDNTKFIFVP 317
            + +I+V P  +      SK+   P+   AT   + E  I +  T   APE    F+ VP
Sbjct: 828  VFVIEVNPRSSRTAPFLSKITEIPMANVATRVILGENLIDLGYTPGLAPEKQEIFVKVP 886


>sp|Q8Y665|CARB_LISMO Carbamoyl-phosphate synthase large chain
            OS=Listeria monocytogenes GN=carB PE=3 SV=1
          Length = 1070

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 141  IHLIKVTPAPAYILHLKSKVLP*PLIQTATETNMQEQSISISLTRAQAPEDNTKFIFVP 317
            + +I+V P  +      SK+   P+   AT   + E  I +  T   APE    F+ VP
Sbjct: 828  VFVIEVNPRSSRTAPFLSKITEIPMANVATRVILGENLIDLGYTPGLAPEKQEIFVKVP 886


>sp|Q71YI1|CARB_LISMF Carbamoyl-phosphate synthase large chain
            OS=Listeria monocytogenes serotype 4b (strain F2365)
            GN=carB PE=3 SV=1
          Length = 1070

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 141  IHLIKVTPAPAYILHLKSKVLP*PLIQTATETNMQEQSISISLTRAQAPEDNTKFIFVP 317
            + +I+V P  +      SK+   P+   AT   + E  I +  T   APE    F+ VP
Sbjct: 828  VFVIEVNPRSSRTAPFLSKITEIPMANVATRVILGENLIDLGYTPGLAPEKQEIFVKVP 886


>sp|Q92AH3|CARB_LISIN Carbamoyl-phosphate synthase large chain
            OS=Listeria innocua GN=carB PE=3 SV=1
          Length = 1070

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 141  IHLIKVTPAPAYILHLKSKVLP*PLIQTATETNMQEQSISISLTRAQAPEDNTKFIFVP 317
            + +I+V P  +      SK+   P+   AT   + E  I +  T   APE    F+ VP
Sbjct: 828  VFVIEVNPRSSRTAPFLSKITEIPMANVATRVILGENLIDLGYTPGLAPEKQEIFVKVP 886
tr_hit_id A7QL69
Definition tr|A7QL69|A7QL69_VITVI Chromosome chr3 scaffold_117, whole genome shotgun sequence OS=Vitis vinifera
Align length 45
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915748|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_D04.
         (528 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QL69|A7QL69_VITVI Chromosome chr3 scaffold_117, whole genom...    49   2e-04
tr|Q10QA8|Q10QA8_ORYSJ Os03g0203000 protein OS=Oryza sativa subs...    45   0.003
tr|B8AQE7|B8AQE7_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.003
tr|A3AF80|A3AF80_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.003
tr|Q9LJN1|Q9LJN1_ARATH Gb|AAB92077.1 (At3g19650) OS=Arabidopsis ...    42   0.025
tr|B8A1G9|B8A1G9_MAIZE Putative uncharacterized protein OS=Zea m...    41   0.042
tr|B6TIS5|B6TIS5_MAIZE Somatic embryogenesis related protein OS=...    41   0.042
tr|Q13SV4|Q13SV4_BURXL 3-oxoacyl-(Acyl-carrier protein) synthase...    33   6.7  
tr|B5DHU4|B5DHU4_DROPS GA27729 OS=Drosophila pseudoobscura pseud...    33   6.7  
tr|B4GQP1|B4GQP1_DROPE GL16384 OS=Drosophila persimilis GN=GL163...    33   6.7  
tr|A1DIW6|A1DIW6_NEOFI 2-amino-3-carboxymuconate-6-semialdehyde ...    33   6.7  

>tr|A7QL69|A7QL69_VITVI Chromosome chr3 scaffold_117, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001467001
           PE=4 SV=1
          Length = 306

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 21/45 (46%), Positives = 31/45 (68%)
 Frame = -2

Query: 485 GRRNPGGVAVVTDRWNHDMFEELNGTPTLKKEEDSIAQIEALLAT 351
           GR+      V  ++W HD+F+E N +P  KKEE+ IA++EALLA+
Sbjct: 262 GRQGQRSGDVRVEKWKHDLFDEANRSPVRKKEEEQIAKVEALLAS 306


>tr|Q10QA8|Q10QA8_ORYSJ Os03g0203000 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0203000 PE=2 SV=1
          Length = 363

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = -2

Query: 449 DRWNHDMFEELNGTPTLKKEEDSIAQIEALLA 354
           ++W HD++E+ N +PT K EE+ IA+IEALLA
Sbjct: 331 EKWKHDLYEQTNRSPTPKTEEEQIAKIEALLA 362


>tr|B8AQE7|B8AQE7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10429 PE=4 SV=1
          Length = 363

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = -2

Query: 449 DRWNHDMFEELNGTPTLKKEEDSIAQIEALLA 354
           ++W HD++E+ N +PT K EE+ IA+IEALLA
Sbjct: 331 EKWKHDLYEQTNRSPTPKTEEEQIAKIEALLA 362


>tr|A3AF80|A3AF80_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009452 PE=4 SV=1
          Length = 376

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = -2

Query: 449 DRWNHDMFEELNGTPTLKKEEDSIAQIEALLA 354
           ++W HD++E+ N +PT K EE+ IA+IEALLA
Sbjct: 344 EKWKHDLYEQTNRSPTPKTEEEQIAKIEALLA 375


>tr|Q9LJN1|Q9LJN1_ARATH Gb|AAB92077.1 (At3g19650) OS=Arabidopsis
           thaliana GN=At3g19650 PE=2 SV=1
          Length = 302

 Score = 41.6 bits (96), Expect = 0.025
 Identities = 16/32 (50%), Positives = 25/32 (78%)
 Frame = -2

Query: 446 RWNHDMFEELNGTPTLKKEEDSIAQIEALLAT 351
           +W+HD+F+E N +P    EE+ IA++EALLA+
Sbjct: 271 KWDHDLFDEANKSPAKATEEEQIAKVEALLAS 302


>tr|B8A1G9|B8A1G9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 337

 Score = 40.8 bits (94), Expect = 0.042
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = -2

Query: 449 DRWNHDMFEELNGTPTLKKEEDSIAQIEALLA 354
           ++W HD++++ N +P  K EE+ IA++EALLA
Sbjct: 305 EKWKHDLYDQTNRSPPPKTEEEQIAKVEALLA 336


>tr|B6TIS5|B6TIS5_MAIZE Somatic embryogenesis related protein OS=Zea
           mays PE=2 SV=1
          Length = 324

 Score = 40.8 bits (94), Expect = 0.042
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = -2

Query: 449 DRWNHDMFEELNGTPTLKKEEDSIAQIEALLA 354
           ++W HD++++ N +P  K EE+ IA++EALLA
Sbjct: 292 EKWKHDLYDQTNRSPPPKTEEEQIAKVEALLA 323


>tr|Q13SV4|Q13SV4_BURXL 3-oxoacyl-(Acyl-carrier protein) synthase
           OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A4297
           PE=4 SV=1
          Length = 354

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = -3

Query: 364 LFWQHDSCDRTGFASEGTKMNFVLSSGACALVNDIEIDCSCMFVSVAVWISGYGRTLLFR 185
           L WQ DS D   F S+    N+ L + A  L  ++++  SC+ + + +  SGY + L   
Sbjct: 81  LGWQADSIDALIFVSQTP--NYRLPATAFVLQAELDLPASCLALDINLGCSGYPQALWLG 138

Query: 184 CS-I*AGAGVTFMRCIEGEMAQMIFP 110
            + I  GA    +  +   +++MI P
Sbjct: 139 MNLIQTGAAKRVLLAVGDTISKMIDP 164


>tr|B5DHU4|B5DHU4_DROPS GA27729 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA27729 PE=4 SV=1
          Length = 1173

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +2

Query: 104 KLRKNHLSHFSFNTPHKSNTCSSLYTASEKQSPSITTYPNSNRDKH 241
           K RK+  SH S ++ HKS++ SS  ++S+  S S +   +S+ DKH
Sbjct: 322 KDRKSSSSHRSSSSSHKSSSSSSSKSSSKSSSSSSSHRSSSSSDKH 367


>tr|B4GQP1|B4GQP1_DROPE GL16384 OS=Drosophila persimilis GN=GL16384
           PE=4 SV=1
          Length = 1106

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +2

Query: 104 KLRKNHLSHFSFNTPHKSNTCSSLYTASEKQSPSITTYPNSNRDKH 241
           K RK+  SH S ++ HKS++ SS  ++S+  S S +   +S+ DKH
Sbjct: 318 KDRKSSSSHRSSSSSHKSSSSSSSKSSSKSSSSSSSHRSSSSSDKH 363