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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915750
Clone id YMU001_000076_D06
Library
Length 597
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000076_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTATTTATTTCAACCCGTCTCCACTAGTCATATCAAGTCATGACAATGCTACAGCATTAC
CTACTCATAGCCAAAAGTGCAATGTTTCAGCATGACTAAAACCAGATGGTTGGAAAAATC
CTTATGCCAATAATTACAGCTTCAATCTTTGAGACTCTTTTGAGCTCCCCCAATGTTTTT
GGAAGACCTTGCAACTTTTTTGATCAGTCATGGGTAAGAGGGTGGTTATCTCTAATCATT
GCAAAATTGACTTGCTCGAGGTTATCACAAACACAAAGTTTGTTGGTCTTCTTAGGCACC
ACAACAATAGGAGACAGTCACACTGTAAGTTCTGTTTCACAAATGAATTTTGTCTCTAGC
AATTAAATGATTTTATCTTTGATTTTCTCAAGGAATTGTCATTGGTCGTTGTTTCTATGG
CTACGGTTGAGTGCATTTGGCTTAGATGCCTTATGGCTGACTTGGGTGTCGGATAGTAGT
CTGCCACCACTATCTTTATTGAGAGTCAGAGTGCTTCAGCAGCTGCAAGGAACCTGGTGT
TCAATACTCGCACAAAGCACAGTGAGGTGCATTAAACTCTCTACACGCGAGGTCAGC
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 59
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915750|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_D06.
         (597 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    33   1.1  
sp|A6ZJ55|YRT7_CAEEL Uncharacterized protein T07A5.7 OS=Caenorha...    32   3.2  
sp|Q4IFH8|HIR3_GIBZE Histone transcription regulator 3 homolog O...    31   5.4  
sp|Q9ES38|S27A5_RAT Bile acyl-CoA synthetase OS=Rattus norvegicu...    31   5.5  
sp|Q54Z85|RACO_DICDI Rho-related protein racO OS=Dictyostelium d...    30   9.2  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 393  ELSLVVVSMATVECIWLRCLMADLGVG**SATTIFIESQSASAAARNLVFNTRTKHSEV 569
            E   +  +    E IWL+  + +LG+       ++ +SQSA   ++N +++ RTKH +V
Sbjct: 1221 EAEYIAATETGKEMIWLKRFLQELGLHQ-KEYVVYCDSQSAIDLSKNSMYHARTKHIDV 1278


>sp|A6ZJ55|YRT7_CAEEL Uncharacterized protein T07A5.7
           OS=Caenorhabditis elegans GN=T07A5.7 PE=4 SV=1
          Length = 452

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 466 PKSAIRHLSQMHSTVAIETTTNDNSLRKSKIKSFNC*RQNSFVKQN 329
           P S + HL Q H    I T TND +L+KSKI ++   +  +    N
Sbjct: 322 PFSFLNHLYQKHRQAYI-TATNDKALKKSKINTYGSRKSRALHSMN 366


>sp|Q4IFH8|HIR3_GIBZE Histone transcription regulator 3 homolog
            OS=Gibberella zeae GN=HIR3 PE=3 SV=1
          Length = 2020

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +3

Query: 99   KPDGWKNPYANNYSFNL*DSFELPQCFWKTLQLF*SVMGKRVVISNHCKIDLLEVITNTK 278
            KPD WKNPY             L +C+WK  Q     +  + + S   KI L+ +I   K
Sbjct: 1386 KPDNWKNPYM------------LSKCYWKMYQTPDDQLDVKDITS---KIGLMTLIDTLK 1430

Query: 279  FVGLLRHHNNR 311
                + H+  R
Sbjct: 1431 KAVEVAHNARR 1441


>sp|Q9ES38|S27A5_RAT Bile acyl-CoA synthetase OS=Rattus norvegicus
           GN=Slc27a5 PE=1 SV=1
          Length = 690

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
 Frame = +1

Query: 109 VGKILMPIITASIFETLLSSPNVF--------GRPCNFFDQSWVRGWLSLIIAKLTCSRL 264
           +G+ L P  TA      L  P  F        GRP   +  SW+  WLSL  A LT S L
Sbjct: 20  LGQPLWPAATALALRWFLGDPTCFVLLGLAFLGRP---WISSWIPHWLSLAAAALTLSLL 76


>sp|Q54Z85|RACO_DICDI Rho-related protein racO OS=Dictyostelium
           discoideum GN=racO PE=3 SV=1
          Length = 276

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = -3

Query: 541 NTRFLAAAEAL*LSIKIVVADYYPTPKSAIRHLSQMHSTVAIETTTNDNSLRKSKIKSFN 362
           N+ F++ +E + ++ +I    YY       + LS++   +AI   +N  + +K KIK  N
Sbjct: 142 NSHFISFSEGVNMANEIDAVGYYECSSLKKKGLSELFDVLAIVGYSNILTKKKDKIKFKN 201

Query: 361 C*RQNSFVKQN 329
               N++ + N
Sbjct: 202 NNNNNNYNENN 212
tr_hit_id Q153Y8
Definition tr|Q153Y8|Q153Y8_HYDMC Polyprotein (Fragment) OS=Hydrangea macrophylla
Align length 50
Score (bit) 51.2
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915750|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_D06.
         (597 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q153Y8|Q153Y8_HYDMC Polyprotein (Fragment) OS=Hydrangea macro...    51   4e-05
tr|A5C6M9|A5C6M9_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5BYR2|A5BYR2_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5BVC1|A5BVC1_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5BFW9|A5BFW9_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5B501|A5B501_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5AS72|A5AS72_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5ALD8|A5ALD8_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5AF15|A5AF15_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5BNY7|A5BNY7_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5BD22|A5BD22_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5AQN8|A5AQN8_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5BN86|A5BN86_VITVI Putative uncharacterized protein OS=Vitis...    49   3e-04
tr|A5BCZ7|A5BCZ7_VITVI Putative uncharacterized protein OS=Vitis...    49   3e-04
tr|A5AWA5|A5AWA5_VITVI Putative uncharacterized protein OS=Vitis...    48   4e-04
tr|A5AHM2|A5AHM2_VITVI Putative uncharacterized protein OS=Vitis...    48   4e-04
tr|A5BT22|A5BT22_VITVI Putative uncharacterized protein OS=Vitis...    48   5e-04
tr|A5AFQ2|A5AFQ2_VITVI Putative uncharacterized protein OS=Vitis...    47   6e-04
tr|A5B3N5|A5B3N5_VITVI Putative uncharacterized protein OS=Vitis...    47   8e-04
tr|A5AGQ1|A5AGQ1_VITVI Putative uncharacterized protein OS=Vitis...    47   8e-04
tr|B6REM5|B6REM5_9BRAS Putative pol polyprotein OS=Boechera diva...    46   0.001
tr|A5AUX3|A5AUX3_VITVI Putative uncharacterized protein OS=Vitis...    46   0.002
tr|A8P0X5|A8P0X5_COPC7 Putative uncharacterized protein OS=Copri...    46   0.002
tr|A5C3H9|A5C3H9_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|A5C203|A5C203_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|A5B5T2|A5B5T2_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|Q710T7|Q710T7_POPDE Gag-pol polyprotein OS=Populus deltoides ...    45   0.003
tr|A5C0X9|A5C0X9_VITVI Putative uncharacterized protein OS=Vitis...    45   0.003
tr|A5AXP8|A5AXP8_VITVI Putative uncharacterized protein OS=Vitis...    45   0.003
tr|A5ARV9|A5ARV9_VITVI Putative uncharacterized protein OS=Vitis...    45   0.004

>tr|Q153Y8|Q153Y8_HYDMC Polyprotein (Fragment) OS=Hydrangea
           macrophylla PE=4 SV=1
          Length = 351

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +3

Query: 420 ATVECIWLRCLMADLGVG**SATTIFIESQSASAAARNLVFNTRTKHSEV 569
           AT E +WLR L+ DLGV   +ATTI+ ++QSA   A N VF+ RTKH +V
Sbjct: 301 ATQELLWLRWLLEDLGVVHSTATTIYCDNQSAIQIAHNDVFHERTKHIDV 350


>tr|A5C6M9|A5C6M9_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_015847 PE=4 SV=1
          Length = 1168

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = +3

Query: 423  TVECIWLRCLMADLGVG**SATTIFIESQSASAAARNLVFNTRTKHSEV 569
            T E +WLR L+ DLGV   SAT ++ ++QSA   A N VF+ RTKH E+
Sbjct: 1068 TSELLWLRWLLKDLGVSTSSATPLYCDNQSAIHIAHNDVFHERTKHIEI 1116


>tr|A5BYR2|A5BYR2_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_014855 PE=4 SV=1
          Length = 1271

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = +3

Query: 423  TVECIWLRCLMADLGVG**SATTIFIESQSASAAARNLVFNTRTKHSEV 569
            T E +WLR L+ DLGV   SAT ++ ++QSA   A N VF+ RTKH E+
Sbjct: 1171 TSELLWLRWLLKDLGVSTSSATPLYCDNQSAIHIAHNDVFHERTKHIEI 1219


>tr|A5BVC1|A5BVC1_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_027174 PE=4 SV=1
          Length = 1381

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = +3

Query: 423  TVECIWLRCLMADLGVG**SATTIFIESQSASAAARNLVFNTRTKHSEV 569
            T E +WLR L+ DLGV   SAT ++ ++QSA   A N VF+ RTKH E+
Sbjct: 1281 TSELLWLRWLLKDLGVSTSSATPLYCDNQSAIHIAHNDVFHERTKHIEI 1329


>tr|A5BFW9|A5BFW9_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_013001 PE=4 SV=1
          Length = 993

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = +3

Query: 423  TVECIWLRCLMADLGVG**SATTIFIESQSASAAARNLVFNTRTKHSEV 569
            T E +WLR L+ DLGV   SAT ++ ++QSA   A N VF+ RTKH E+
Sbjct: 893  TSELLWLRWLLKDLGVSTSSATPLYCDNQSAIHIAHNDVFHERTKHIEI 941


>tr|A5B501|A5B501_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_022975 PE=4 SV=1
          Length = 1277

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = +3

Query: 423  TVECIWLRCLMADLGVG**SATTIFIESQSASAAARNLVFNTRTKHSEV 569
            T E +WLR L+ DLGV   SAT ++ ++QSA   A N VF+ RTKH E+
Sbjct: 1177 TSELLWLRWLLKDLGVSTSSATPLYCDNQSAIHIAHNDVFHERTKHIEI 1225


>tr|A5AS72|A5AS72_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006017 PE=4 SV=1
          Length = 383

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = +3

Query: 423 TVECIWLRCLMADLGVG**SATTIFIESQSASAAARNLVFNTRTKHSEV 569
           T E +WLR L+ DLGV   SAT ++ ++QSA   A N VF+ RTKH E+
Sbjct: 283 TSELLWLRWLLKDLGVSTSSATPLYCDNQSAIHIAHNDVFHERTKHIEI 331


>tr|A5ALD8|A5ALD8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039530 PE=4 SV=1
          Length = 367

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = +3

Query: 423 TVECIWLRCLMADLGVG**SATTIFIESQSASAAARNLVFNTRTKHSEV 569
           T E +WLR L+ DLGV   SAT ++ ++QSA   A N VF+ RTKH E+
Sbjct: 267 TSELLWLRWLLKDLGVSTSSATPLYCDNQSAIHIAHNDVFHERTKHIEI 315


>tr|A5AF15|A5AF15_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_021305 PE=4 SV=1
          Length = 1287

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = +3

Query: 423  TVECIWLRCLMADLGVG**SATTIFIESQSASAAARNLVFNTRTKHSEV 569
            T E +WLR L+ DLGV   SAT ++ ++QSA   A N VF+ RTKH E+
Sbjct: 1187 TSELLWLRWLLKDLGVSTSSATPLYCDNQSAIHIAHNDVFHERTKHIEI 1235


>tr|A5BNY7|A5BNY7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_040460 PE=4 SV=1
          Length = 1293

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 26/59 (44%), Positives = 35/59 (59%)
 Frame = +3

Query: 393  ELSLVVVSMATVECIWLRCLMADLGVG**SATTIFIESQSASAAARNLVFNTRTKHSEV 569
            E     ++  T E IWLR L+ DLGV   S T ++ ++QSA   A N VF+ RTKH E+
Sbjct: 958  EAEYCALADTTFEFIWLRWLLKDLGVSTSSTTPLYCDNQSAIHIAHNDVFHERTKHIEI 1016