NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915751
Clone id YMU001_000076_D08
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000076_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGCGCGTGTCCCTGTTGTTTACTTGATTGCGAAGAATTGACTCAAGCCGAAAACGGAA
ACCTTCCCTCAAATCACTGACAGCCCTCCTCTGCCTTAACTGGCCAAGTTCTCCGGCTGC
TGAAGAGGGAATCCGTTCCTCCTCATTCACTACTCCAGGTCGTAAAAACCGTCCTCTCAA
AAAAGACTACATGCAGACATACAACTAAGTAAGTTCACAGGCTACCGAAAATAAACCGTA
TAAAAGGTGCCCTGATGTGGGAAGTAACATGTTTGACCTGTAATCGCTGACGGTGAGCAA
AATCAGATACAGCGCGATGCTCCACCAAAAGCTGAAGTTCTCTCTGTCTATCTCGCTCTG
CTCTCATAAGAAGATCTAAAATCGCTTGTCTGTTCAGGAACCTTCTGGTCCCTTCTATTA
AGCACCTGAACTGCACTTTCATCAAAGCTTTCTGATTCTGCTGCCATATGCCTCTCATTT
GTCTGTTCAGAGGCATCAACCCTCTGTAGTCTTTGTCTTCCTCCTCT
■■Homology search results ■■ -
sp_hit_id Q8L7M4
Definition sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana
Align length 47
Score (bit) 31.6
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915751|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_D08.
         (527 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidops...    32   2.4  
sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helic...    30   7.1  

>sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis
           thaliana GN=SDN5 PE=2 SV=2
          Length = 567

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = -1

Query: 494 ASEQTNERHMAAESESFDESAVQVLNRRDQKVPEQTSDFRSSYESRA 354
           ASE +N   ++++ E+  ++  +V N+R Q V  Q S+  + ++SRA
Sbjct: 409 ASESSNAIPVSSDDEALSKAVKEVKNKRSQFVWTQFSELNAHFQSRA 455


>sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase
           prp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 /
           1980 / Ss-1) GN=prp5 PE=3 SV=1
          Length = 1114

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 458 ESESFDESAVQVLNRRDQKVPEQTSDFRSSYESRAR--*TERTSAFGG 321
           E E +     + L +  Q+VPE+ ++ R SY+ + +    + +S FGG
Sbjct: 840 EQEQYSVGIAKALEQSGQEVPERLNEMRKSYKDKVKSGAKKESSGFGG 887
tr_hit_id A7PHV4
Definition tr|A7PHV4|A7PHV4_VITVI Chromosome chr13 scaffold_17, whole genome shotgun sequence OS=Vitis vinifera
Align length 62
Score (bit) 71.2
E-value 6.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915751|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_D08.
         (527 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PHV4|A7PHV4_VITVI Chromosome chr13 scaffold_17, whole genom...    71   6e-25
tr|A9PGM3|A9PGM3_POPTR Putative uncharacterized protein OS=Popul...    68   2e-23
tr|B3SGL6|B3SGL6_MEDTR Putative Glu-rich protein OS=Medicago tru...    64   5e-22
tr|Q9LZ79|Q9LZ79_ARATH Putative uncharacterized protein T32M21_6...    70   1e-20
tr|A5CA54|A5CA54_VITVI Putative uncharacterized protein OS=Vitis...    66   4e-19
tr|B6UDD1|B6UDD1_MAIZE Putative uncharacterized protein OS=Zea m...    67   2e-18
tr|A7PQN5|A7PQN5_VITVI Chromosome chr6 scaffold_25, whole genome...    60   6e-18
tr|A9TMM2|A9TMM2_PHYPA Predicted protein OS=Physcomitrella paten...    64   4e-17
tr|A3C1Q1|A3C1Q1_ORYSJ Putative uncharacterized protein OS=Oryza...    63   2e-16
tr|B8BET8|B8BET8_ORYSI Putative uncharacterized protein OS=Oryza...    63   2e-16
tr|Q0WM72|Q0WM72_ARATH Putative uncharacterized protein At2g2795...    53   7e-15
tr|Q9SJJ6|Q9SJJ6_ARATH Putative uncharacterized protein At2g2795...    53   6e-13
tr|Q6K9X4|Q6K9X4_ORYSJ Os02g0823300 protein OS=Oryza sativa subs...    46   3e-10
tr|B8AF51|B8AF51_ORYSI Putative uncharacterized protein OS=Oryza...    46   3e-10
tr|Q8H7Q8|Q8H7Q8_ORYSJ Os03g0107500 protein OS=Oryza sativa subs...    43   2e-09
tr|A2XBK1|A2XBK1_ORYSI Putative uncharacterized protein OS=Oryza...    43   2e-09
tr|A5B7Y9|A5B7Y9_VITVI Putative uncharacterized protein OS=Vitis...    42   4e-04
tr|Q9SY32|Q9SY32_ARATH T17H7.18 (F17F8.27) OS=Arabidopsis thalia...    44   0.005
tr|Q6NQ80|Q6NQ80_ARATH At1g30860 (Putative uncharacterized prote...    44   0.005
tr|A3ADA7|A3ADA7_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.009
tr|O64756|O64756_ARATH Putative uncharacterized protein At2g3492...    41   0.042
tr|O65430|O65430_ARATH Glu-rich protein OS=Arabidopsis thaliana ...    40   0.094
tr|A1K624|A1K624_AZOSB Sensor protein OS=Azoarcus sp. (strain BH...    35   1.8  
tr|Q0RSH0|Q0RSH0_FRAAA Putative two-component system response re...    35   2.3  
tr|A8F1N6|A8F1N6_RICM5 Putative uncharacterized protein OS=Ricke...    35   3.0  
tr|B4GJ40|B4GJ40_DROPE GL25576 OS=Drosophila persimilis GN=GL255...    34   5.2  
tr|A7NH77|A7NH77_ROSCS Acetyl-CoA acetyltransferase OS=Roseiflex...    33   8.8  
tr|A1D1I3|A1D1I3_NEOFI Anaphase promoting complex subunit 10 (AP...    33   8.8  

>tr|A7PHV4|A7PHV4_VITVI Chromosome chr13 scaffold_17, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018091001
           PE=4 SV=1
          Length = 823

 Score = 71.2 bits (173), Expect(2) = 6e-25
 Identities = 40/62 (64%), Positives = 44/62 (70%)
 Frame = -3

Query: 186 SFLRGRFLRPGVVNEEERIPSSAAGELGQLRQRRAVSDLREGFRFRLESILRNQVNNRDT 7
           SFLRGRFLR     EEER PS AA EL QLRQR  VS LREGFR RLE+I+R QV++   
Sbjct: 384 SFLRGRFLRNERPIEEERPPSMAASELVQLRQRHTVSGLREGFRSRLENIVRGQVSSHSD 443

Query: 6   RQ 1
            Q
Sbjct: 444 TQ 445



 Score = 66.2 bits (160), Expect(2) = 6e-25
 Identities = 35/56 (62%), Positives = 42/56 (75%)
 Frame = -2

Query: 403 RFLNRQAILDLLMRAERDRQRELQLLVEHRAVSDFAHRQRLQVKHVTSHIRAPFIR 236
           RF  RQA+LDLL+R E +RQRELQ L+EHRAVSDFAHR R+Q     S +R  F+R
Sbjct: 342 RFRGRQALLDLLVRIETERQRELQGLLEHRAVSDFAHRNRIQ-----SFLRGRFLR 392


>tr|A9PGM3|A9PGM3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 293

 Score = 67.8 bits (164), Expect(2) = 2e-23
 Identities = 38/57 (66%), Positives = 42/57 (73%)
 Frame = -3

Query: 186 SFLRGRFLRPGVVNEEERIPSSAAGELGQLRQRRAVSDLREGFRFRLESILRNQVNN 16
           S LRGRFLR     EEER PS AA EL QLRQR  VS LREGFR RLE+I+R QV++
Sbjct: 45  SLLRGRFLRNERPVEEERPPSMAASELVQLRQRHTVSGLREGFRSRLENIVRGQVSS 101



 Score = 65.1 bits (157), Expect(2) = 2e-23
 Identities = 35/56 (62%), Positives = 42/56 (75%)
 Frame = -2

Query: 403 RFLNRQAILDLLMRAERDRQRELQLLVEHRAVSDFAHRQRLQVKHVTSHIRAPFIR 236
           R   RQAILDLL+R ER+RQREL+ L+EHRAVSDFAHR R+Q     S +R  F+R
Sbjct: 3   RLRGRQAILDLLVRIERERQRELEGLLEHRAVSDFAHRNRIQ-----SLLRGRFLR 53


>tr|B3SGL6|B3SGL6_MEDTR Putative Glu-rich protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 978

 Score = 64.3 bits (155), Expect(2) = 5e-22
 Identities = 36/54 (66%), Positives = 41/54 (75%)
 Frame = -3

Query: 186 SFLRGRFLRPGVVNEEERIPSSAAGELGQLRQRRAVSDLREGFRFRLESILRNQ 25
           S LRGRFLR   V E+ER PS+AA EL QLRQR  VS +REGFR RLE+I+R Q
Sbjct: 469 SLLRGRFLRNETV-EDERPPSTAASELVQLRQRHTVSGIREGFRSRLENIVRGQ 521



 Score = 63.5 bits (153), Expect(2) = 5e-22
 Identities = 33/56 (58%), Positives = 42/56 (75%)
 Frame = -2

Query: 403 RFLNRQAILDLLMRAERDRQRELQLLVEHRAVSDFAHRQRLQVKHVTSHIRAPFIR 236
           R   RQA++DLL+R ER+RQREL+ L+EHRAVSDFAHR R+Q     S +R  F+R
Sbjct: 427 RLRGRQALVDLLVRVERERQRELEGLLEHRAVSDFAHRNRIQ-----SLLRGRFLR 477


>tr|Q9LZ79|Q9LZ79_ARATH Putative uncharacterized protein T32M21_60
           OS=Arabidopsis thaliana GN=T32M21_60 PE=4 SV=1
          Length = 831

 Score = 70.5 bits (171), Expect(2) = 1e-20
 Identities = 38/57 (66%), Positives = 44/57 (77%)
 Frame = -2

Query: 406 RRFLNRQAILDLLMRAERDRQRELQLLVEHRAVSDFAHRQRLQVKHVTSHIRAPFIR 236
           RR   RQA+LDLLMRAER+RQRELQ L+EHRAVSDFAHR R+Q     S +R  F+R
Sbjct: 354 RRVRGRQALLDLLMRAERERQRELQGLLEHRAVSDFAHRNRIQ-----SLLRGRFLR 405



 Score = 52.8 bits (125), Expect(2) = 1e-20
 Identities = 30/59 (50%), Positives = 36/59 (61%)
 Frame = -3

Query: 186 SFLRGRFLRPGVVNEEERIPSSAAGELGQLRQRRAVSDLREGFRFRLESILRNQVNNRD 10
           S LRGRFLR       ER PS A+ EL QLR+R+ VS LREGF    E+I+    +N D
Sbjct: 397 SLLRGRFLRNERPTVPERTPSMASRELLQLRERQTVSGLREGFHNGRENIVHENTSNTD 455


>tr|A5CA54|A5CA54_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039521 PE=4 SV=1
          Length = 914

 Score = 66.2 bits (160), Expect(2) = 4e-19
 Identities = 35/56 (62%), Positives = 42/56 (75%)
 Frame = -2

Query: 403 RFLNRQAILDLLMRAERDRQRELQLLVEHRAVSDFAHRQRLQVKHVTSHIRAPFIR 236
           RF  RQA+LDLL+R E +RQRELQ L+EHRAVSDFAHR R+Q     S +R  F+R
Sbjct: 342 RFRGRQALLDLLVRIETERQRELQGLLEHRAVSDFAHRNRIQ-----SFLRGRFLR 392



 Score = 51.6 bits (122), Expect(2) = 4e-19
 Identities = 39/96 (40%), Positives = 43/96 (44%), Gaps = 34/96 (35%)
 Frame = -3

Query: 186 SFLRGRFLRPGVVNEEERIPSSAAGELGQLRQRRAVSDLR-------------------- 67
           SFLRGRFLR     EEER PS AA EL QLRQR  VS L                     
Sbjct: 384 SFLRGRFLRNERPIEEERPPSMAASELVQLRQRHTVSGLSSDFRNQMARWIGTSVVDPSP 443

Query: 66  --------------EGFRFRLESILRNQVNNRDTRQ 1
                         EGFR RLE+I+R QV++    Q
Sbjct: 444 VGTWNGYLYREWEWEGFRSRLENIVRGQVSSHSDTQ 479


>tr|B6UDD1|B6UDD1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 701

 Score = 67.0 bits (162), Expect(2) = 2e-18
 Identities = 35/58 (60%), Positives = 43/58 (74%)
 Frame = -3

Query: 186 SFLRGRFLRPGVVNEEERIPSSAAGELGQLRQRRAVSDLREGFRFRLESILRNQVNNR 13
           + LRGRFLR   + EE R PS AA ELGQLRQR  VS LRE FRFRLE+++R Q +++
Sbjct: 152 ALLRGRFLRNSGLPEERRPPSVAARELGQLRQRHPVSGLREEFRFRLENLVRGQADSQ 209



 Score = 48.5 bits (114), Expect(2) = 2e-18
 Identities = 24/41 (58%), Positives = 28/41 (68%)
 Frame = -2

Query: 403 RFLNRQAILDLLMRAERDRQRELQLLVEHRAVSDFAHRQRL 281
           R   RQA L+L+MR   DRQ EL  L +HRAVSDF HR R+
Sbjct: 110 RIRGRQARLELVMRMAADRQAELHRLSQHRAVSDFPHRNRI 150


>tr|A7PQN5|A7PQN5_VITVI Chromosome chr6 scaffold_25, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022134001
           PE=4 SV=1
          Length = 738

 Score = 59.7 bits (143), Expect(2) = 6e-18
 Identities = 32/59 (54%), Positives = 39/59 (66%)
 Frame = -2

Query: 412 GTRRFLNRQAILDLLMRAERDRQRELQLLVEHRAVSDFAHRQRLQVKHVTSHIRAPFIR 236
           G  R   RQA+LD+L+R  R+RQRELQ L EH  VSDFAHR R+Q     S +R  F+R
Sbjct: 231 GILRLCGRQALLDMLVRTGRERQRELQQLSEHSVVSDFAHRNRIQ-----SLLRGRFLR 284



 Score = 54.3 bits (129), Expect(2) = 6e-18
 Identities = 34/61 (55%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
 Frame = -3

Query: 186 SFLRGRFLRPGVVNEEERIPSSAAGELGQLRQRRAVSDL-REGFRFRLESILRNQVNNRD 10
           S LRGRFLR   + E+ER  S AA ELG LRQRR VS L REGF  RL++ +    N  D
Sbjct: 276 SLLRGRFLRNNRLAEDERPASVAASELGLLRQRRTVSGLSREGFLSRLDNSVCGSSNCSD 335

Query: 9   T 7
           T
Sbjct: 336 T 336


>tr|A9TMM2|A9TMM2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170876 PE=4 SV=1
          Length = 858

 Score = 63.9 bits (154), Expect(2) = 4e-17
 Identities = 32/56 (57%), Positives = 42/56 (75%)
 Frame = -3

Query: 180 LRGRFLRPGVVNEEERIPSSAAGELGQLRQRRAVSDLREGFRFRLESILRNQVNNR 13
           LRGR  R G   ++ R+PSSA+ E+GQL+Q++AVS LRE FR RLE+I+R Q N R
Sbjct: 481 LRGRIRRGGSAEDDPRMPSSASTEIGQLQQQQAVSRLREAFRSRLETIVRGQANAR 536



 Score = 47.4 bits (111), Expect(2) = 4e-17
 Identities = 23/45 (51%), Positives = 33/45 (73%)
 Frame = -2

Query: 412 GTRRFLNRQAILDLLMRAERDRQRELQLLVEHRAVSDFAHRQRLQ 278
           G +R    + ++++LMR ER+RQREL+ L E R+VSDF+ R RLQ
Sbjct: 434 GRQRQEASEMVVEVLMRIERERQRELERLTELRSVSDFSQRNRLQ 478


>tr|A3C1Q1|A3C1Q1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_029223 PE=4 SV=1
          Length = 1170

 Score = 63.2 bits (152), Expect(2) = 2e-16
 Identities = 33/52 (63%), Positives = 42/52 (80%)
 Frame = -3

Query: 186 SFLRGRFLRPGVVNEEERIPSSAAGELGQLRQRRAVSDLREGFRFRLESILR 31
           + LRGRFLR G  +++ R PS+AA ELGQLRQR +VS LRE FRFRLE+++R
Sbjct: 122 ALLRGRFLRNG--DDDRRPPSTAATELGQLRQRHSVSGLREEFRFRLENVVR 171



 Score = 45.8 bits (107), Expect(2) = 2e-16
 Identities = 23/41 (56%), Positives = 26/41 (63%)
 Frame = -2

Query: 403 RFLNRQAILDLLMRAERDRQRELQLLVEHRAVSDFAHRQRL 281
           R   RQA L+L+MR   DR  EL  L  HRAVSDF HR R+
Sbjct: 80  RIRGRQARLELVMRMAADRHAELHRLSHHRAVSDFPHRNRI 120


>tr|B8BET8|B8BET8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32468 PE=4 SV=1
          Length = 658

 Score = 63.2 bits (152), Expect(2) = 2e-16
 Identities = 33/52 (63%), Positives = 42/52 (80%)
 Frame = -3

Query: 186 SFLRGRFLRPGVVNEEERIPSSAAGELGQLRQRRAVSDLREGFRFRLESILR 31
           + LRGRFLR G  +++ R PS+AA ELGQLRQR +VS LRE FRFRLE+++R
Sbjct: 122 ALLRGRFLRNG--DDDRRPPSTAATELGQLRQRHSVSGLREEFRFRLENVVR 171



 Score = 45.8 bits (107), Expect(2) = 2e-16
 Identities = 23/41 (56%), Positives = 26/41 (63%)
 Frame = -2

Query: 403 RFLNRQAILDLLMRAERDRQRELQLLVEHRAVSDFAHRQRL 281
           R   RQA L+L+MR   DR  EL  L  HRAVSDF HR R+
Sbjct: 80  RIRGRQARLELVMRMAADRHAELHRLSHHRAVSDFPHRNRI 120