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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915752
Clone id YMU001_000076_D09
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000076_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGTAACTTCTTGTGCTTCGAACAGAGAACCACATTTGGCATTTGCATCCGGTTCATTGAG
TTTCCTTGCCACACCATACTCTGTAGCATAAGGAAACATGCCTTCAAGGTGAAAGCATAG
GTGATTGCATCTGCCACCTCCTTTGGCATCCATATAGACCAAGGTATTGCCACCCATTCG
CATCATTAGTCAGGTGGGTCCGAGACCCCATCCTTCCATACTAGCCATCTGGTTACCCAA
TTCCATGCTGCCCCCAATGAGCACCAGTTTCCAGTACCAAAGGAATAGCATAAAAAAGAA
TCTGGGTTCCATATCCCAACACCCCCAAGTAATTTCATTTTCAAACACACACTCGGCCCA
CACTTTGTCATATCCCTACATCTCTTTCGGCTCTCTACTCTAGATACCACATGTCCATGC
TATCGAGACCATTGAGGAGGTCGCCTGCTGTATCGCAGGACGCCTTGAGCAAAGGGACAT
CCATACATGTGTGTACATGACAAGACCTGCACACTCTTGCTCAATTGTATCCTAATGACG
ACCAATCCC
■■Homology search results ■■ -
sp_hit_id P77309
Definition sp|P77309|YNEJ_ECOLI Uncharacterized HTH-type transcriptional regulator yneJ OS=Escherichia coli (strain K12)
Align length 22
Score (bit) 31.2
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915752|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_D09.
         (549 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P77309|YNEJ_ECOLI Uncharacterized HTH-type transcriptional re...    31   3.4  
sp|Q88YN9|PHNW_LACPL 2-aminoethylphosphonate--pyruvate transamin...    31   3.4  
sp|Q8J1X7|FUSC3_FUSCU Allergen Fus c 3 OS=Fusarium culmorum PE=1...    30   6.0  
sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein ...    30   7.7  
sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein...    30   7.7  
sp|A0LG76|MUTS_SYNFM DNA mismatch repair protein mutS OS=Syntrop...    30   7.8  

>sp|P77309|YNEJ_ECOLI Uncharacterized HTH-type transcriptional
           regulator yneJ OS=Escherichia coli (strain K12) GN=yneJ
           PE=4 SV=1
          Length = 293

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 257 LGAAWNWVTRWLVWKDGVSDPP 192
           L   W W+T WLVW+ G    P
Sbjct: 253 LAEQWRWLTTWLVWRRGAKTRP 274


>sp|Q88YN9|PHNW_LACPL 2-aminoethylphosphonate--pyruvate transaminase
           OS=Lactobacillus plantarum GN=phnW PE=3 SV=1
          Length = 366

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +2

Query: 308 SISQHPQVISFSNTHSAHTLSYPYISFGSLL*IPHVHAIETIEEVACCIAGRLEQRDIHT 487
           +++ HP++  F+  HS  T         +L+ I H H I TI +    + G     D   
Sbjct: 126 TLADHPEITHFATVHSETTTGI-LNPIEALMPIMHEHGIVTIIDAMSSLGGVPISIDELD 184

Query: 488 CVYMTRPAHSC 520
           C Y+   A+ C
Sbjct: 185 CDYLISSANKC 195


>sp|Q8J1X7|FUSC3_FUSCU Allergen Fus c 3 OS=Fusarium culmorum PE=1
           SV=1
          Length = 450

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
 Frame = +1

Query: 91  RKHAFKVKA*VIASATSFGIHIDQGIATHSHH*SGGSETPSFHTSHLVTQFHAAPNEHQF 270
           ++HA +++     SA S       G A+H    S G  +  ++  H+    H   N+  F
Sbjct: 117 QEHAHEIQRHRAHSAQSSAGLPPTGFASHLPPASSGPVSLGWNMYHVPPNLHLNANQFNF 176

Query: 271 PVPKE*HKKESGF-----HIPTPPSNFIFKHTL 354
            VP   H   SG      H  T P++F ++H +
Sbjct: 177 EVPG--HMNVSGHPTHLEHSSTNPNSFHYEHNI 207


>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6
           OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2
           SV=2
          Length = 476

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +3

Query: 171 HPFASLVRWV--RDPILP--Y*PSGYPIPCCPQ*APVSSTKGIA*KRIWVPYP 317
           HP+ASL  W   R P++P  Y P  Y         P+  + G+   + W PYP
Sbjct: 203 HPYASLANWQMGRPPVVPGSYIPGSY--------TPMMLSSGMIPLQGWSPYP 247


>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56
           OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=2
           SV=1
          Length = 367

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
 Frame = -2

Query: 548 GLVVIRIQLSKSVQVLSCTHMYGCPFAQGVLRYSRRPPQWSR*HGHVVSRVESRKRCRD- 372
           G +  + +L    +  +C ++  C FA G+    + PP W      +V+  E     R+ 
Sbjct: 84  GKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQ----EIVAAHEEATEAREE 139

Query: 371 -----MTKCGPSVCLKMKLLGGVGIWNPDSFL---CYSFGTGNWCSLGAA 246
                MT  GP+        GG G  +  ++    C  F T   C  G A
Sbjct: 140 HQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKFYTDEGCPYGDA 189


>sp|A0LG76|MUTS_SYNFM DNA mismatch repair protein mutS
           OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
           MPOB) GN=mutS PE=3 SV=1
          Length = 889

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 222 SMEGWGLGPT*LMMRMGGNTLVYMDAKGGGRCNH---LCFHLEGMFPYATEYGV 70
           S+EG+G+    L +R  G  L YM A   G C+H   L  +  G F    E GV
Sbjct: 221 SLEGFGISGMDLGIRAAGAILAYMQANLLGSCDHITRLLPYSRGDFMIVDEAGV 274
tr_hit_id Q3KI49
Definition tr|Q3KI49|Q3KI49_PSEPF Outer membrane porin OS=Pseudomonas fluorescens (strain Pf0-1)
Align length 51
Score (bit) 33.5
E-value 7.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915752|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_D09.
         (549 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3KI49|Q3KI49_PSEPF Outer membrane porin OS=Pseudomonas fluor...    33   7.5  
tr|B1ELZ1|B1ELZ1_9ESCH Transcriptional regulator, LysR family OS...    33   7.5  
tr|B8KL42|B8KL42_9GAMM ATP-binding protein of ABC transporter OS...    33   9.8  
tr|Q850T7|Q850T7_ORYSJ Os03g0659400 protein OS=Oryza sativa subs...    33   9.8  
tr|A2XK97|A2XK97_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.8  

>tr|Q3KI49|Q3KI49_PSEPF Outer membrane porin OS=Pseudomonas
           fluorescens (strain Pf0-1) GN=Pf01_0814 PE=3 SV=1
          Length = 471

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 233 LPNSMLPPMSTSFQYQR--NSIKKNLGSISQHPQVISFSNTHSAHTLSYPY 379
           L +S +  ++T   Y +  +  KK LG I      +SF  TH AHTL++ Y
Sbjct: 283 LGDSSVLALTTGLNYYKTVDEGKKKLGEIDNDTYSLSFGLTHQAHTLTFSY 333


>tr|B1ELZ1|B1ELZ1_9ESCH Transcriptional regulator, LysR family
           OS=Escherichia albertii TW07627 GN=ESCAB7627_2632 PE=4
           SV=1
          Length = 293

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 257 LGAAWNWVTRWLVWKDGVSDPP 192
           LG  W W+T WLVW+ G    P
Sbjct: 253 LGEPWRWLTTWLVWRRGAKTRP 274


>tr|B8KL42|B8KL42_9GAMM ATP-binding protein of ABC transporter
           OS=gamma proteobacterium NOR5-3 GN=NOR53_3238 PE=4 SV=1
          Length = 225

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 281 FGTGNWCSLGAAWNWVTRWL 222
           F T  WCS  A+W+W+ RWL
Sbjct: 197 FVTACWCSPTASWHWIRRWL 216


>tr|Q850T7|Q850T7_ORYSJ Os03g0659400 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0047K21.1 PE=2 SV=1
          Length = 697

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 150 PYRPRYCHPFASLVRWVRDPILPY*PSGYP 239
           P+ P YC+P+ S   W+ DP + Y P+G P
Sbjct: 477 PFDPAYCNPYVSGYPWLTDPYM-YGPAGMP 505


>tr|A2XK97|A2XK97_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12873 PE=4 SV=1
          Length = 697

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 150 PYRPRYCHPFASLVRWVRDPILPY*PSGYP 239
           P+ P YC+P+ S   W+ DP + Y P+G P
Sbjct: 477 PFDPAYCNPYVSGYPWLTDPYM-YGPAGMP 505