NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915754
Clone id YMU001_000076_D11
Library
Length 528
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000076_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCCGCAGGAATTTTTGTTACCCATATCAACGTCTCTTATAGTGCCGCATGCCTTCAAGGC
GAAAGCATAGGTGATTGCATATGGAGCAAGGCCCTCGCTTCGCATCTACTAACAAAGCTT
GCAGATCGTGCTACCAATATATGTATGAACTCTTAAGGTGAAGAAAATCATGAGGCTTTA
GATTAATACATAAAGACTTTAAAAGACATAGCTTTCAAACATGATTATTAAGGGTTTTAC
TTATTACCTGGCGCAGAACATTGACGGTAGGTTTCGCTTGTAAGTCAGAGACGAGAGGGC
AAGTCCGTGATGGTGCTGCAAACGGAGGCTTGCAACGTGTAAGATGACATGAAGTTACTT
ATTTACACATGTTGCCGCTTGCCTGCACAACTGAATTTCAGTACTTGGCTCTCAAAAGCG
AGTAGAGTAGAGTAGCACAAAGTTGGAAAGCCATGATCATGGCAGTAATCAGGCATCGAA
TGTCAGACAATTGCTCTACGTGGACAAGCGTGAAGCCTGATTTGAAAA
■■Homology search results ■■ -
sp_hit_id Q9FFG8
Definition sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana
Align length 29
Score (bit) 35.4
E-value 0.16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915754|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_D11.
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protei...    35   0.16 
sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein...    31   3.0  
sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protei...    31   3.0  
sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protei...    30   5.1  
sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protei...    30   6.7  
sp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protei...    30   6.7  
sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protei...    30   8.7  

>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein
           At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
          Length = 657

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = -1

Query: 90  MRSEGLAPYAITYAFALKACGTIRDVDMG 4
           MR E + P + T++  LKACGT++D+++G
Sbjct: 140 MRKEEITPVSFTFSALLKACGTMKDLNLG 168


>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein
           At1g02370, mitochondrial OS=Arabidopsis thaliana
           GN=At1g02370 PE=2 SV=1
          Length = 537

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = -1

Query: 90  MRSEGLAPYAITYAFALKACGTIRDVD 10
           M+  G++P  +TY+  +++CG++ D+D
Sbjct: 233 MKQRGISPCGVTYSIWMQSCGSLNDLD 259


>sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein
           At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1
          Length = 681

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 90  MRSEGLAPYAITYAFALKACGTIRDVDMG 4
           M S+G+ P A TY   LKACG   DV  G
Sbjct: 135 MVSKGIRPDAFTYPSVLKACGETLDVAFG 163


>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein
           At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
          Length = 654

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 90  MRSEGLAPYAITYAFALKACGTIRDVDMG 4
           M + G+ P   TY F LKAC  +R +D G
Sbjct: 94  MLNSGVRPTKYTYPFVLKACAGLRAIDDG 122


>sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protein
           At5g52850, chloroplastic OS=Arabidopsis thaliana
           GN=PCMP-H31 PE=2 SV=1
          Length = 893

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 90  MRSEGLAPYAITYAFALKACGTIRDVDMG 4
           MRS GL P   TY+  L  C  +R +D G
Sbjct: 316 MRSLGLQPNNFTYSAILSLCSAVRSLDFG 344


>sp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protein
           At4g04370 OS=Arabidopsis thaliana GN=PCMP-E99 PE=2 SV=1
          Length = 729

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 117 STICKLC**MRSEGLAPYAITYAFALKACGTIRDVDMG 4
           S I KL   MR +GL P   T+  +L   GT+ D++MG
Sbjct: 227 SEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMG 264


>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial OS=Arabidopsis thaliana
           GN=At2g13420 PE=2 SV=1
          Length = 509

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 330 ILHVASLRLQHHHGLALSSLTYKRNLPS 247
           ++H   LRL+H+  +ALS   Y R+LPS
Sbjct: 73  LIHQTLLRLRHNSKIALSFFQYLRSLPS 100
tr_hit_id B7S8F8
Definition tr|B7S8F8|B7S8F8_9HYME Ubiquitin-associated domain-containing protein OS=Glyptapanteles flavicoxis
Align length 105
Score (bit) 34.7
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915754|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_D11.
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7S8F8|B7S8F8_9HYME Ubiquitin-associated domain-containing pr...    35   2.8  
tr|A7QFH9|A7QFH9_VITVI Chromosome chr8 scaffold_88, whole genome...    34   4.9  
tr|Q4UGH0|Q4UGH0_THEAN Ubiquitin-protein ligase 1, putative OS=T...    33   8.1  
tr|B7S8X2|B7S8X2_9HYME Ubiquitin-associated domain-containing pr...    33   8.1  

>tr|B7S8F8|B7S8F8_9HYME Ubiquitin-associated domain-containing
           protein OS=Glyptapanteles flavicoxis GN=GFP_L4_0010 PE=4
           SV=1
          Length = 491

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
 Frame = -3

Query: 505 SGFTLVHVE---QLSDIRCLITAMIMAF-QLCATLLYSLLRAKY*--NSVVQASGNMCK* 344
           SGF L+H E   QLSD   L+   I A  +L    +  L++ K    +SV      M   
Sbjct: 105 SGFHLIHAEHIRQLSDDSSLVDENIAASDELLMVQVRPLVKLKELTEDSVKGPPVEMILQ 164

Query: 343 VTSCHLTRCKPPFAAPSRTCPLVSDLQAKPTVNVLRQVISKTLNN 209
            TS HL+  KPP A P+  CP     + +  +  L +  +K L N
Sbjct: 165 ATS-HLSEAKPPRATPTTDCPADFQAEIRKILITLVEASAKILMN 208


>tr|A7QFH9|A7QFH9_VITVI Chromosome chr8 scaffold_88, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037428001
           PE=4 SV=1
          Length = 534

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 90  MRSEGLAPYAITYAFALKACGTIRDVDMG 4
           MRSEG  P   T+ F LKAC  + D+ +G
Sbjct: 21  MRSEGFLPNNFTFPFVLKACARLLDLQLG 49


>tr|Q4UGH0|Q4UGH0_THEAN Ubiquitin-protein ligase 1, putative
            OS=Theileria annulata GN=TA19515 PE=4 SV=1
          Length = 4418

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -3

Query: 280  LVSDLQAKPTVNVLRQVISKTLNNHV*KLCLLKSLCINLKPHDFL 146
            L++D+      N  +QVI  TL N   K+  +K L I+LK HDF+
Sbjct: 2155 LLNDINQNENPNSEKQVIENTLINSENKVYKVKDLFISLKNHDFV 2199


>tr|B7S8X2|B7S8X2_9HYME Ubiquitin-associated domain-containing
           protein OS=Glyptapanteles indiensis GN=GIP_L4_0290 PE=4
           SV=1
          Length = 495

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
 Frame = -3

Query: 505 SGFTLVHVE---QLSDIRCLITAMIMAF-QLCATLLYSLLRAKY*N--SVVQASGNMCK* 344
           SGF L+H E   QLSD   L+   I A  +L    +  L++ K     SV      M   
Sbjct: 109 SGFHLIHAEHIRQLSDDSSLVDENIAASDELLMVQVRPLVKLKELTEESVKGPPVEMILQ 168

Query: 343 VTSCHLTRCKPPFAAPSRTCPLVSDLQAKPTVNVLRQVISKTLNN 209
            TS HL+  +PP A P+  CP     + +  +  L +  +K L N
Sbjct: 169 ATS-HLSEARPPRATPTTDCPADFQAEIRKILITLVEASAKILMN 212