BP915758 |
Clone id |
YMU001_000076_E03 |
Library |
YMU01 |
Length |
478 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000076_E03. |
Accession |
BP915758 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GCAGGATCTAAGTCATGCGGGTGCATTTCGTTGACCGCTTTGTTGAAGCCTTGCACTACT ATTCAGCTCTTTTCGACTCTGTAGGGGAGAGTCATGCTGAGAGCAGTGAGGAGCGACATG CTGTGGAACAGCAATTGTTCTCGAGTGAGATGAAGAACATTGTGGCCGTTGGGGGTCCAG CTAGAACAGGGGAAGTGAAGTACGATAATTGGAAGACTGTCATGGGCAGTGCTGGGTTCA AGCAAGTTTCACTCGCTGGAAATGCTACAACACAAGCCACTTTGTTGTTAAACATGTTCC CTAGTGAAGGCTACTCACTTTCGGAGGAAGACGGGGTTCTTAAGCTGGGGTGGAAAGACC TTAGTTTGTACACAGCTTCAGCTTGGTGTTGGCCAGCATCGCTTCATCACCTGTAGATTG GAGCAAAATATACACTGGATGGAAGCCTGAAGGAGATGTTGAGCAGTGCTTGTGTGGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9M384 |
Definition |
sp|Q9M384|SCR_ARATH Protein SCARECROW OS=Arabidopsis thaliana |
Align length |
120 |
Score (bit) |
155.0 |
E-value |
9.0e-38 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q0MRQ2 |
Definition |
tr|Q0MRQ2|Q0MRQ2_PINSY SCARECROW OS=Pinus sylvestris |
Align length |
120 |
Score (bit) |
158.0 |
E-value |
1.0e-37 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915758|Adiantum capillus-veneris mRNA, clone: YMU001_000076_E03. (478 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q0MRQ2|Q0MRQ2_PINSY SCARECROW OS=Pinus sylvestris GN=SCR1 PE=... 158 1e-37 tr|Q5NDC9|Q5NDC9_CUCSA SCARECROW OS=Cucumis sativus GN=scr PE=2 ... 155 7e-37 tr|A7Q9S7|A7Q9S7_VITVI Chromosome chr8 scaffold_68, whole genome... 153 4e-36 tr|A2Q3V8|A2Q3V8_MEDTR Flagellar basal body rod protein; GRAS tr... 153 5e-36 tr|B7FA13|B7FA13_ORYSJ cDNA, clone: J100030A12, full insert sequ... 144 3e-33 tr|A9U5Y0|A9U5Y0_PHYPA Predicted protein (Fragment) OS=Physcomit... 137 3e-31 tr|Q6ULS4|Q6ULS4_MAIZE Scarecrow-like 23 (Fragment) OS=Zea mays ... 134 3e-30 tr|B6SU23|B6SU23_MAIZE Nodulation signaling pathway 2 protein OS... 134 3e-30 tr|Q7F1I1|Q7F1I1_ORYSJ SCARECROW protein-like protein OS=Oryza s... 133 4e-30 tr|Q0D5D6|Q0D5D6_ORYSJ Os07g0567700 protein OS=Oryza sativa subs... 133 4e-30 tr|A3BLA0|A3BLA0_ORYSJ Putative uncharacterized protein OS=Oryza... 133 4e-30 tr|A2YMR9|A2YMR9_ORYSI Putative uncharacterized protein OS=Oryza... 133 4e-30 tr|A9SJP4|A9SJP4_PHYPA Predicted protein (Fragment) OS=Physcomit... 132 7e-30 tr|A7R3J1|A7R3J1_VITVI Chromosome undetermined scaffold_528, who... 130 2e-29 tr|A9TUF0|A9TUF0_PHYPA Predicted protein OS=Physcomitrella paten... 129 7e-29 tr|A7Q1Q9|A7Q1Q9_VITVI Chromosome chr7 scaffold_44, whole genome... 119 8e-26 tr|A5AXM8|A5AXM8_VITVI Putative uncharacterized protein OS=Vitis... 119 1e-25 tr|B7FND6|B7FND6_MEDTR Putative uncharacterized protein OS=Medic... 111 2e-23 tr|A7P9Y5|A7P9Y5_VITVI Chromosome chr14 scaffold_9, whole genome... 97 3e-19 tr|A9SHQ0|A9SHQ0_PHYPA GRS2 GRAS-type E3 ubiquitin ligase protei... 96 1e-18 tr|A9SWX7|A9SWX7_PHYPA GRS3 GRAS-type protein OS=Physcomitrella ... 95 2e-18 tr|A9T4X6|A9T4X6_PHYPA Predicted protein (Fragment) OS=Physcomit... 93 8e-18 tr|A9SBT0|A9SBT0_PHYPA Predicted protein (Fragment) OS=Physcomit... 90 5e-17 tr|A7U4T5|A7U4T5_9TRAC DELLA protein OS=Selaginella kraussiana G... 90 5e-17 tr|A9T4X1|A9T4X1_PHYPA Predicted protein OS=Physcomitrella paten... 89 1e-16 tr|Q2R3Q8|Q2R3Q8_ORYSJ GRAS family transcription factor containi... 89 1e-16 tr|B8BKN5|B8BKN5_ORYSI Putative uncharacterized protein OS=Oryza... 89 1e-16 tr|A3CBL6|A3CBL6_ORYSJ Putative uncharacterized protein OS=Oryza... 89 1e-16 tr|A9LY09|A9LY09_9TRAC Putative DELLA protein OS=Selaginella moe... 88 2e-16 tr|B2BA72|B2BA72_PEA Putative gibberellin signaling DELLA protei... 87 4e-16
>tr|Q0MRQ2|Q0MRQ2_PINSY SCARECROW OS=Pinus sylvestris GN=SCR1 PE=2 SV=1 Length = 842
Score = 158 bits (399), Expect = 1e-37 Identities = 76/120 (63%), Positives = 89/120 (74%) Frame = +3
Query: 27 FVDRFVEALHYYSALFDSVGXXXXXXXXXXXXXXQQLFSSEMKNIVAVGGPARTGEVKYD 206 F+ RFVEA+HYYSALFDS+G QQL S E+KNI+AVGGPARTGE+K+D Sbjct: 714 FLSRFVEAIHYYSALFDSLGASYPEDSHDRHLVEQQLLSREIKNILAVGGPARTGEIKFD 773
Query: 207 NWKTVMGSAGFKQVSLAGNATTQATLLLNMFPSEGYSLSEEDGVLKLGWKDLSLYTASAW 386 NW+ + GFK +SLAGNA TQATLLL MFP +GY+L EE+G LKLGWK L L TASAW Sbjct: 774 NWRDQLKQTGFKPISLAGNAATQATLLLGMFPCQGYTLMEENGTLKLGWKGLCLLTASAW 833
>tr|Q5NDC9|Q5NDC9_CUCSA SCARECROW OS=Cucumis sativus GN=scr PE=2 SV=1 Length = 858
Score = 155 bits (393), Expect = 7e-37 Identities = 76/128 (59%), Positives = 94/128 (73%) Frame = +3
Query: 27 FVDRFVEALHYYSALFDSVGXXXXXXXXXXXXXXQQLFSSEMKNIVAVGGPARTGEVKYD 206 F+ RFVEA+HYYSALFDS+G QQL S E++N++AVGGP+R+GEVK+ Sbjct: 715 FLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRSGEVKFQ 774
Query: 207 NWKTVMGSAGFKQVSLAGNATTQATLLLNMFPSEGYSLSEEDGVLKLGWKDLSLYTASAW 386 NW+ + +GFK +SLAGNA TQATLLL MFPS+GY+L E++G LKLGWKDL L TASAW Sbjct: 775 NWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAW 834
Query: 387 CWPASLHH 410 P HH Sbjct: 835 KPP--FHH 840
>tr|A7Q9S7|A7Q9S7_VITVI Chromosome chr8 scaffold_68, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033608001 PE=4 SV=1 Length = 724
Score = 153 bits (386), Expect(2) = 4e-36 Identities = 72/120 (60%), Positives = 92/120 (76%) Frame = +3
Query: 27 FVDRFVEALHYYSALFDSVGXXXXXXXXXXXXXXQQLFSSEMKNIVAVGGPARTGEVKYD 206 F+ RFVEA+HYYSALFDS+G QQL S E++N++AVGGP+R+G+VK++ Sbjct: 588 FLGRFVEAIHYYSALFDSLGASYGEESEQRHAVEQQLLSREIRNVLAVGGPSRSGDVKFN 647
Query: 207 NWKTVMGSAGFKQVSLAGNATTQATLLLNMFPSEGYSLSEEDGVLKLGWKDLSLYTASAW 386 NW+ + +GF+ VSLAGNA TQATLLL MFPS+GY+L E++G LKLGWKDL L TASAW Sbjct: 648 NWREKLQQSGFRVVSLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAW 707
Score = 21.6 bits (44), Expect(2) = 4e-36 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2
Query: 2 QDLSHAGAF 28 QDLSHAG+F Sbjct: 580 QDLSHAGSF 588
>tr|A2Q3V8|A2Q3V8_MEDTR Flagellar basal body rod protein; GRAS transcription factor OS=Medicago truncatula GN=MtrDRAFT_AC155890g4v2 PE=4 SV=1 Length = 805
Score = 153 bits (386), Expect = 5e-36 Identities = 71/120 (59%), Positives = 91/120 (75%) Frame = +3
Query: 27 FVDRFVEALHYYSALFDSVGXXXXXXXXXXXXXXQQLFSSEMKNIVAVGGPARTGEVKYD 206 F+ RFVEA+HYYSALFDS+G QQL S E++N++AVGGP+R+GE+K+ Sbjct: 672 FLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEIKFH 731
Query: 207 NWKTVMGSAGFKQVSLAGNATTQATLLLNMFPSEGYSLSEEDGVLKLGWKDLSLYTASAW 386 NW+ + GF+ +SLAGNA TQA+LLL MFPSEGY+L E++G+LKLGWKDL L TASAW Sbjct: 732 NWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAW 791
>tr|B7FA13|B7FA13_ORYSJ cDNA, clone: J100030A12, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 660
Score = 144 bits (362), Expect = 3e-33 Identities = 69/120 (57%), Positives = 87/120 (72%) Frame = +3
Query: 27 FVDRFVEALHYYSALFDSVGXXXXXXXXXXXXXXQQLFSSEMKNIVAVGGPARTGEVKYD 206 F+ RFVEA+HYYSALFDS+ QQL S E++N++AVGGPARTG+VK+ Sbjct: 533 FLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFG 592
Query: 207 NWKTVMGSAGFKQVSLAGNATTQATLLLNMFPSEGYSLSEEDGVLKLGWKDLSLYTASAW 386 +W+ + +GF+ SLAG+A QA LLL MFPS+GY+L EE+G LKLGWKDL L TASAW Sbjct: 593 SWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAW 652
>tr|A9U5Y0|A9U5Y0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_22273 PE=4 SV=1 Length = 364
Score = 137 bits (345), Expect = 3e-31 Identities = 72/121 (59%), Positives = 83/121 (68%), Gaps = 1/121 (0%) Frame = +3
Query: 27 FVDRFVEALHYYSALFDSVGXXXXXXXXXXXXXXQQLFSSEMKNIVAVGGPARTGEVKYD 206 F+ RFVEALHYYSALFDS+G QQL S E+KNI+A GGPARTGE K+D Sbjct: 245 FLSRFVEALHYYSALFDSLGASYKADSPERHMVEQQLLSCEIKNILAFGGPARTGEAKFD 304
Query: 207 NWKTVMGSAGFKQVSLAGNATTQATLLL-NMFPSEGYSLSEEDGVLKLGWKDLSLYTASA 383 W+ +G FK VSL+G A QA LLL +FP EGY+L E G LKLGWKDL L+TASA Sbjct: 305 QWRDELGKR-FKPVSLSGKAAHQAALLLQGLFPCEGYTLLEHRGTLKLGWKDLYLFTASA 363
Query: 384 W 386 W Sbjct: 364 W 364
>tr|Q6ULS4|Q6ULS4_MAIZE Scarecrow-like 23 (Fragment) OS=Zea mays GN=scl23 PE=2 SV=1 Length = 313
Score = 134 bits (336), Expect = 3e-30 Identities = 69/123 (56%), Positives = 84/123 (68%), Gaps = 3/123 (2%) Frame = +3
Query: 27 FVDRFVEALHYYSALFDSVGXXXXXXXXXXXXXX---QQLFSSEMKNIVAVGGPARTGEV 197 F+ RFVEALHYYSALFD++G +QL +E++NIVAVGGP RTGEV Sbjct: 178 FLGRFVEALHYYSALFDALGDGAGAAEEESAERYAVERQLLGAEIRNIVAVGGPKRTGEV 237
Query: 198 KYDNWKTVMGSAGFKQVSLAGNATTQATLLLNMFPSEGYSLSEEDGVLKLGWKDLSLYTA 377 + + W + AGF+ VSLAG+ QA LLL M+P +GY+L EED LKLGWKDLSL TA Sbjct: 238 RVERWSHELRHAGFRPVSLAGSPAAQARLLLGMYPWKGYTLVEEDACLKLGWKDLSLLTA 297
Query: 378 SAW 386 SAW Sbjct: 298 SAW 300
>tr|B6SU23|B6SU23_MAIZE Nodulation signaling pathway 2 protein OS=Zea mays PE=2 SV=1 Length = 452
Score = 134 bits (336), Expect = 3e-30 Identities = 69/123 (56%), Positives = 84/123 (68%), Gaps = 3/123 (2%) Frame = +3
Query: 27 FVDRFVEALHYYSALFDSVGXXXXXXXXXXXXXX---QQLFSSEMKNIVAVGGPARTGEV 197 F+ RFVEALHYYSALFD++G +QL +E++NIVAVGGP RTGEV Sbjct: 317 FLGRFVEALHYYSALFDALGDGAGAAEEESAERYAVERQLLGAEIRNIVAVGGPKRTGEV 376
Query: 198 KYDNWKTVMGSAGFKQVSLAGNATTQATLLLNMFPSEGYSLSEEDGVLKLGWKDLSLYTA 377 + + W + AGF+ VSLAG+ QA LLL M+P +GY+L EED LKLGWKDLSL TA Sbjct: 377 RVERWSHELQHAGFRPVSLAGSPAAQARLLLGMYPWKGYTLVEEDACLKLGWKDLSLLTA 436
Query: 378 SAW 386 SAW Sbjct: 437 SAW 439
>tr|Q7F1I1|Q7F1I1_ORYSJ SCARECROW protein-like protein OS=Oryza sativa subsp. japonica GN=OJ1092_A07.120 PE=4 SV=1 Length = 306
Score = 133 bits (335), Expect = 4e-30 Identities = 68/123 (55%), Positives = 85/123 (69%), Gaps = 3/123 (2%) Frame = +3
Query: 27 FVDRFVEALHYYSALFDSVGXXXXXXXXXXXXXX---QQLFSSEMKNIVAVGGPARTGEV 197 F+ RFVEALHYYSALFD++G +QL +E++NIVAVGGP RTGEV Sbjct: 160 FLGRFVEALHYYSALFDALGDGAGAAEEEAAERHAVERQLLGAEIRNIVAVGGPKRTGEV 219
Query: 198 KYDNWKTVMGSAGFKQVSLAGNATTQATLLLNMFPSEGYSLSEEDGVLKLGWKDLSLYTA 377 + + W + AGF+ V+LAG+ QA LLL M+P +GY+L EEDG LKLGWKDLSL TA Sbjct: 220 RVERWGDELRRAGFRPVTLAGSPAAQARLLLGMYPWKGYTLVEEDGCLKLGWKDLSLLTA 279
Query: 378 SAW 386 S+W Sbjct: 280 SSW 282
>tr|Q0D5D6|Q0D5D6_ORYSJ Os07g0567700 protein OS=Oryza sativa subsp. japonica GN=Os07g0567700 PE=4 SV=1 Length = 457
Score = 133 bits (335), Expect = 4e-30 Identities = 68/123 (55%), Positives = 85/123 (69%), Gaps = 3/123 (2%) Frame = +3
Query: 27 FVDRFVEALHYYSALFDSVGXXXXXXXXXXXXXX---QQLFSSEMKNIVAVGGPARTGEV 197 F+ RFVEALHYYSALFD++G +QL +E++NIVAVGGP RTGEV Sbjct: 311 FLGRFVEALHYYSALFDALGDGAGAAEEEAAERHAVERQLLGAEIRNIVAVGGPKRTGEV 370
Query: 198 KYDNWKTVMGSAGFKQVSLAGNATTQATLLLNMFPSEGYSLSEEDGVLKLGWKDLSLYTA 377 + + W + AGF+ V+LAG+ QA LLL M+P +GY+L EEDG LKLGWKDLSL TA Sbjct: 371 RVERWGDELRRAGFRPVTLAGSPAAQARLLLGMYPWKGYTLVEEDGCLKLGWKDLSLLTA 430
Query: 378 SAW 386 S+W Sbjct: 431 SSW 433
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