BP915760 |
Clone id |
YMU001_000076_E05 |
Library |
YMU01 |
Length |
493 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000076_E05. |
Accession |
BP915760 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL244Contig1 |
Sequence |
TGCCGAAGCAAATCAGTGAAATCAAGGATTTTTTGCTTACGACGCGGAGGAAGGATGCGC GCTCCACCAAAATCAAGCGCAGCAAGGATGTCGTGAAGTTCAAGGTTCGTTGCAAGAAGT ACCTGTATACGCTTTGCGTGTTCGACTCTGAGAAGGCGGACAAGCTCAAGCAGTCCCTTC CACCAGGTTTGAGTGTCCAAGATGTTTAGGTTTGCTCGAGCAGCATGCATGTAAGGATGC ATCTGGCAGCAGTTTTGTAGCATTTTGACAATCGTTGTTGTAATGCCGGATTGGCCACAA GCTGGATGACACAGAACATATGCTGATCTTATTCATTCCATTCGGCCATTCATGTTTTTG GTTTAAAGATCTCTAATAGTGAAGAGCTAGTTTGCAGTTATATACAGTTAAGTGCTCCAT CTGTGAAGGAAGCTCTGCCATGAACACCATGGATGTTTAATTGTCTTATGATATCTTCTG AGTTTTTTCGCCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O22860 |
Definition |
sp|O22860|RL38_ARATH 60S ribosomal protein L38 OS=Arabidopsis thaliana |
Align length |
68 |
Score (bit) |
125.0 |
E-value |
1.0e-28 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NLH6 |
Definition |
tr|A9NLH6|A9NLH6_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
68 |
Score (bit) |
128.0 |
E-value |
2.0e-28 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915760|Adiantum capillus-veneris mRNA, clone: YMU001_000076_E05. (493 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NLH6|A9NLH6_PICSI Putative uncharacterized protein OS=Picea... 128 2e-28 tr|A9TGW1|A9TGW1_PHYPA Predicted protein OS=Physcomitrella paten... 125 1e-27 tr|A9PDL5|A9PDL5_POPTR Putative uncharacterized protein OS=Popul... 125 1e-27 tr|A9P978|A9P978_POPTR Putative uncharacterized protein OS=Popul... 125 1e-27 tr|A9NLM2|A9NLM2_PICSI Putative uncharacterized protein OS=Picea... 125 1e-27 tr|B4FHI7|B4FHI7_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 124 2e-27 tr|A9S3Z6|A9S3Z6_PHYPA Predicted protein OS=Physcomitrella paten... 123 5e-27 tr|B6SPK5|B6SPK5_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 122 9e-27 tr|A9SDA4|A9SDA4_PHYPA Predicted protein OS=Physcomitrella paten... 122 9e-27 tr|A7QYS2|A7QYS2_VITVI Chromosome chr5 scaffold_253, whole genom... 122 9e-27 tr|B6SNL8|B6SNL8_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 122 1e-26 tr|A9PH37|A9PH37_POPTR Putative uncharacterized protein OS=Popul... 121 2e-26 tr|B6UE19|B6UE19_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 120 4e-26 tr|B6T9V8|B6T9V8_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 120 4e-26 tr|Q8GVY2|Q8GVY2_ORYSJ 60S ribosomal protein L38, putative, expr... 118 1e-25 tr|B8BKA7|B8BKA7_ORYSI Putative uncharacterized protein OS=Oryza... 118 1e-25 tr|B8B772|B8B772_ORYSI Putative uncharacterized protein OS=Oryza... 118 1e-25 tr|A3BKW3|A3BKW3_ORYSJ Putative uncharacterized protein OS=Oryza... 118 1e-25 tr|Q38JI0|Q38JI0_SOLTU Ribosomal protein L38-like OS=Solanum tub... 118 2e-25 tr|B8BKA6|B8BKA6_ORYSI Putative uncharacterized protein OS=Oryza... 117 2e-25 tr|Q75IN7|Q75IN7_ORYSJ Os05g0507200 protein OS=Oryza sativa subs... 115 8e-25 tr|B6SPI9|B6SPI9_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 115 1e-24 tr|A9TQF6|A9TQF6_PHYPA Predicted protein OS=Physcomitrella paten... 115 1e-24 tr|B8AZS4|B8AZS4_ORYSI Putative uncharacterized protein OS=Oryza... 114 2e-24 tr|B6SIV4|B6SIV4_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=... 114 2e-24 tr|A3B5N9|A3B5N9_ORYSJ Putative uncharacterized protein OS=Oryza... 114 2e-24 tr|Q8GUQ9|Q8GUQ9_CHLRE 60S ribosomal protein L38 (Ribosomal prot... 109 8e-23 tr|B6P9Y9|B6P9Y9_BRAFL Putative uncharacterized protein OS=Branc... 107 2e-22 tr|A4S4Z4|A4S4Z4_OSTLU Ribosomal protein L38, component of cytos... 106 5e-22 tr|Q6DER9|Q6DER9_XENTR MGC89823 protein OS=Xenopus tropicalis GN... 106 7e-22
>tr|A9NLH6|A9NLH6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=3 SV=1 Length = 69
Score = 128 bits (321), Expect = 2e-28 Identities = 62/68 (91%), Positives = 65/68 (95%) Frame = +3
Query: 3 PKQISEIKDFLLTTRRKDARSTKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLP 182 PKQI+EIKDFLLT RRKDARS +IKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLP Sbjct: 2 PKQINEIKDFLLTARRKDARSVRIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLP 61
Query: 183 PGLSVQDV 206 PGL VQD+ Sbjct: 62 PGLQVQDL 69
>tr|A9TGW1|A9TGW1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_108135 PE=3 SV=1 Length = 69
Score = 125 bits (314), Expect = 1e-27 Identities = 61/67 (91%), Positives = 65/67 (97%) Frame = +3
Query: 6 KQISEIKDFLLTTRRKDARSTKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPP 185 KQISEIKDFLLT RRKDARS KIKRSKDVVKFKVRCKKYLYTLCVFD+EKADKLKQSLPP Sbjct: 3 KQISEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCKKYLYTLCVFDTEKADKLKQSLPP 62
Query: 186 GLSVQDV 206 GL+VQ++ Sbjct: 63 GLTVQEL 69
>tr|A9PDL5|A9PDL5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=3 SV=1 Length = 69
Score = 125 bits (314), Expect = 1e-27 Identities = 61/68 (89%), Positives = 63/68 (92%) Frame = +3
Query: 3 PKQISEIKDFLLTTRRKDARSTKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLP 182 PKQI EIKDFLLT RRKDARS KIKRSKD VKFKVRC KYLYTLCVFD+EKADKLKQSLP Sbjct: 2 PKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDTEKADKLKQSLP 61
Query: 183 PGLSVQDV 206 PGLSVQD+ Sbjct: 62 PGLSVQDL 69
>tr|A9P978|A9P978_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=3 SV=1 Length = 69
Score = 125 bits (313), Expect = 1e-27 Identities = 61/68 (89%), Positives = 63/68 (92%) Frame = +3
Query: 3 PKQISEIKDFLLTTRRKDARSTKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLP 182 PKQI EIKDFLLT RRKDARS KIKRS+DVVKFKVRC KYLYTLCVFD EKADKLKQSLP Sbjct: 2 PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLP 61
Query: 183 PGLSVQDV 206 PGLSVQD+ Sbjct: 62 PGLSVQDL 69
>tr|A9NLM2|A9NLM2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=3 SV=1 Length = 69
Score = 125 bits (313), Expect = 1e-27 Identities = 61/68 (89%), Positives = 64/68 (94%) Frame = +3
Query: 3 PKQISEIKDFLLTTRRKDARSTKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLP 182 PKQISEIKDFLLT RRKDARS IKRSK+VVKFKVRCKKYLYTLCVFDSEKADKLKQSLP Sbjct: 2 PKQISEIKDFLLTARRKDARSVNIKRSKNVVKFKVRCKKYLYTLCVFDSEKADKLKQSLP 61
Query: 183 PGLSVQDV 206 PGL+V D+ Sbjct: 62 PGLTVHDL 69
>tr|B4FHI7|B4FHI7_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=4 SV=1 Length = 69
Score = 124 bits (312), Expect = 2e-27 Identities = 61/68 (89%), Positives = 64/68 (94%) Frame = +3
Query: 3 PKQISEIKDFLLTTRRKDARSTKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLP 182 PKQI EIKDFLLT RRKDARS KIKRSKDVVKFKVRC KYLYTLCVFD+EKA+KLKQSLP Sbjct: 2 PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQSLP 61
Query: 183 PGLSVQDV 206 PGLSVQ+V Sbjct: 62 PGLSVQEV 69
>tr|A9S3Z6|A9S3Z6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_208463 PE=3 SV=1 Length = 69
Score = 123 bits (308), Expect = 5e-27 Identities = 60/67 (89%), Positives = 63/67 (94%) Frame = +3
Query: 6 KQISEIKDFLLTTRRKDARSTKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPP 185 KQISEIKDFLLT RRKDARS KIKRSKDVVKFKVRC KYLYTLCVFDS+KADKLKQSLPP Sbjct: 3 KQISEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSDKADKLKQSLPP 62
Query: 186 GLSVQDV 206 GL+V D+ Sbjct: 63 GLTVHDL 69
>tr|B6SPK5|B6SPK5_MAIZE 60S ribosomal protein L38 OS=Zea mays PE=4 SV=1 Length = 69
Score = 122 bits (306), Expect = 9e-27 Identities = 59/68 (86%), Positives = 64/68 (94%) Frame = +3
Query: 3 PKQISEIKDFLLTTRRKDARSTKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLP 182 PKQI EIKDFLLT RRKDARS KIKRSKDVVKFKVRC KYLYTLCVFD+EKA+KLKQSLP Sbjct: 2 PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQSLP 61
Query: 183 PGLSVQDV 206 PGL+V++V Sbjct: 62 PGLTVEEV 69
>tr|A9SDA4|A9SDA4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_211044 PE=3 SV=1 Length = 69
Score = 122 bits (306), Expect = 9e-27 Identities = 60/67 (89%), Positives = 63/67 (94%) Frame = +3
Query: 6 KQISEIKDFLLTTRRKDARSTKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPP 185 KQISEIKDFLLT RRKDARS KIKRSKDVVKFKVRC KYLYTLCVFDS+KADKLKQSLPP Sbjct: 3 KQISEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSDKADKLKQSLPP 62
Query: 186 GLSVQDV 206 GL+V D+ Sbjct: 63 GLTVLDL 69
>tr|A7QYS2|A7QYS2_VITVI Chromosome chr5 scaffold_253, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00010306001 PE=3 SV=1 Length = 125
Score = 122 bits (306), Expect = 9e-27 Identities = 60/67 (89%), Positives = 62/67 (92%) Frame = +3
Query: 6 KQISEIKDFLLTTRRKDARSTKIKRSKDVVKFKVRCKKYLYTLCVFDSEKADKLKQSLPP 185 K I EIKDFLLT RRKDARS KIKRSKDVVKFKVRC KYLYTLCVFD+EKADKLKQSLPP Sbjct: 59 KMIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKADKLKQSLPP 118
Query: 186 GLSVQDV 206 GLSVQD+ Sbjct: 119 GLSVQDL 125
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