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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915771
Clone id YMU001_000076_F05
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000076_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATGTAGAGAATTTACAAAGTTTTGCAGGTGTTACATTGAGACTGGTCCCTCCATGAAGC
AACGAGAACTGCGTGTGGGAGGACAGAGGTAGTCGTGTGCAGGGTGTTTCACAAGGCTCT
TAAATGCAAGCTGCTTGTAAATAGAGGTATGAGGTGAATTGCATCATTTGGATTATGCCA
GCAAGTCAATTTGACGGGCTGCGTATGGAGGCTTCCATGCCGGTGAGAGTAGTTGTATAA
TAGAAACAAACCCGTGATTGGCTTATGTAAGAGCTGTAAAAGCTGTTAGGTGACCACCTT
TATAATAGCCATTAGTTCATCATGTCCCGCAAAATGCAACAAAATAAAGTGCTGCAGCTC
AATTCTTGTGGCATCTACATCTAGAAATGCAGTATAAAAAAATCCTATGAGCTGCCATCT
AGTCTCAAGAGCTGTCTTTTCACCTACCGTTAAGCAGCTTATACTTTGTTCTAAAGAACT
GAATATAGCAGAAATGATAGATTGCTAGGGCTGTGCTCACAATGCCGATAGTCAGTGAAC
CAGT
■■Homology search results ■■ -
sp_hit_id P52960
Definition sp|P52960|PIP2_YEAST Peroxisome proliferation transcriptional regulator OS=Saccharomyces cerevisiae
Align length 70
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915771|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_F05.
         (544 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52960|PIP2_YEAST Peroxisome proliferation transcriptional re...    32   1.5  
sp|Q06504|NAT3_YEAST N-terminal acetyltransferase B complex cata...    32   2.6  
sp|Q5VVW2|GARL3_HUMAN GTPase-activating Rap/Ran-GAP domain-like ...    31   3.4  
sp|Q3V0G7|GARL3_MOUSE GTPase-activating Rap/Ran-GAP domain-like ...    31   4.4  
sp|O21406|NU4M_STRCA NADH-ubiquinone oxidoreductase chain 4 OS=S...    30   5.8  
sp|P54547|G6PD_BACSU Glucose-6-phosphate 1-dehydrogenase OS=Baci...    30   7.6  
sp|Q7YRB2|CP8B1_PIG Cytochrome P450 8B1 OS=Sus scrofa GN=CYP8B1 ...    30   7.6  

>sp|P52960|PIP2_YEAST Peroxisome proliferation transcriptional
           regulator OS=Saccharomyces cerevisiae GN=PIP2 PE=1 SV=1
          Length = 996

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = -2

Query: 474 LEQSISCLTVGEKTALETRWQLIGFFYTAFLDVDATRIELQHFILLHFAGHDE--LMAII 301
           L  SI+ +   E  A+E R + + FFY  F    A  I L  F  L+F G  E  L +++
Sbjct: 616 LRASIALMLYFETLAME-RSECLSFFYKYFFQCCADTISLIRFFFLYFNGSYEKVLSSLV 674

Query: 300 KVVT*QLLQL 271
             +T +++QL
Sbjct: 675 CFITTKVIQL 684


>sp|Q06504|NAT3_YEAST N-terminal acetyltransferase B complex
           catalytic subunit NAT3 OS=Saccharomyces cerevisiae
           GN=NAT3 PE=1 SV=2
          Length = 195

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -2

Query: 192 KLTCWHNPNDAIHLIPLFTSSLHLRAL*NTLHTTTSVLPHAV 67
           K T WH    A+ + P F        L NTL T T V+PH V
Sbjct: 70  KTTEWHTHITAVTVAPRFRRISLASKLCNTLETMTDVMPHEV 111


>sp|Q5VVW2|GARL3_HUMAN GTPase-activating Rap/Ran-GAP domain-like
           protein 3 OS=Homo sapiens GN=GARNL3 PE=1 SV=2
          Length = 1013

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
 Frame = -2

Query: 252 GLFLLYNYS--------HRHGSLHTQPVKLT---CWHNPNDAI-----HLIPLFTSSLHL 121
           GL L YNYS           GS   QP       CW+    AI     +L+   T S+ +
Sbjct: 714 GLLLCYNYSCIYKKVCPFNGGSFLVQPSASDFQFCWNQAPYAIVCAFPYLLAFTTDSMEI 773

Query: 120 RAL*NTLHTTTSVLPHAVLVASWRD 46
           R + N     T+V+P   LVAS  D
Sbjct: 774 RLVVNGNLVHTAVVPQLQLVASRSD 798


>sp|Q3V0G7|GARL3_MOUSE GTPase-activating Rap/Ran-GAP domain-like
           protein 3 OS=Mus musculus GN=Garnl3 PE=2 SV=1
          Length = 1038

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
 Frame = -2

Query: 252 GLFLLYNYS--------HRHGSLHTQPVKLT---CWHNPNDAI-----HLIPLFTSSLHL 121
           GL L YNYS           GS   QP       CW+    AI     +L+   T S+ +
Sbjct: 738 GLLLCYNYSCIYKKVCPFNGGSFLLQPSASDFQFCWNQAPYAIVCAFPYLLAFTTDSMEI 797

Query: 120 RAL*NTLHTTTSVLPHAVLVASWRD 46
           R + N     T+V+P   LVAS  D
Sbjct: 798 RLVVNGNLVHTAVVPQLQLVASRSD 822


>sp|O21406|NU4M_STRCA NADH-ubiquinone oxidoreductase chain 4
           OS=Struthio camelus GN=MT-ND4 PE=3 SV=1
          Length = 458

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 159 IHLIPLFTSSLHLRAL*NTLHTTTSVLPHAVLVASW 52
           I  +PL  + LHL     TLH  T  L H +L  SW
Sbjct: 155 ISSLPLLVTILHLHTQIGTLHMPTLELTHPLLTHSW 190


>sp|P54547|G6PD_BACSU Glucose-6-phosphate 1-dehydrogenase
           OS=Bacillus subtilis GN=zwf PE=1 SV=1
          Length = 489

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 282 LLQLLHKPITGLFLLYNYSHRHGSLHTQPVKLTCWHNPNDAIHLIPLFTSSLH 124
           LL +  +P  G+ L  N     G+ H QP+KL    N ND ++    +   +H
Sbjct: 373 LLVIHIQPDEGITLYLNAKKLGGAAHAQPIKLDYCSNCNDELNTPEAYEKLIH 425


>sp|Q7YRB2|CP8B1_PIG Cytochrome P450 8B1 OS=Sus scrofa GN=CYP8B1
           PE=2 SV=1
          Length = 501

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 502 IYHFCYIQFFRTKYKLLNGR*KDSS*D*MAAHRIFL 395
           ++HFCY   F+  Y  L GR +D   D + A  +F+
Sbjct: 169 LFHFCYDILFKAGYLSLFGRTEDKEQDLLQAEELFM 204
tr_hit_id Q0HPS8
Definition tr|Q0HPS8|Q0HPS8_SHESR Putative uncharacterized protein OS=Shewanella sp. (strain MR-7)
Align length 25
Score (bit) 33.9
E-value 5.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915771|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_F05.
         (544 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0HPS8|Q0HPS8_SHESR Putative uncharacterized protein OS=Shewa...    34   5.8  
tr|Q8YFK0|Q8YFK0_BRUME RESPONSE REGULATOR PROTEIN OS=Brucella me...    33   9.9  
tr|Q57EV2|Q57EV2_BRUAB GGDEF domain OS=Brucella abortus GN=BruAb...    33   9.9  
tr|Q2YMD4|Q2YMD4_BRUA2 GGDEF OS=Brucella abortus (strain 2308) G...    33   9.9  
tr|B2S9Q4|B2S9Q4_BRUA1 GGDEF domain protein OS=Brucella abortus ...    33   9.9  
tr|B0CK99|B0CK99_BRUSI Diguanylate cyclase (GGDEF) domain OS=Bru...    33   9.9  
tr|A9M8I8|A9M8I8_BRUC2 Diguanylate cyclase (GGDEF) domain OS=Bru...    33   9.9  

>tr|Q0HPS8|Q0HPS8_SHESR Putative uncharacterized protein
           OS=Shewanella sp. (strain MR-7) GN=Shewmr7_3900 PE=4
           SV=1
          Length = 1180

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -2

Query: 105 TLHTTTSVLPHAVLVASWRDQSQCN 31
           TLH   + L  AVL+ SW+DQSQC+
Sbjct: 284 TLHPDATYLALAVLIGSWQDQSQCD 308


>tr|Q8YFK0|Q8YFK0_BRUME RESPONSE REGULATOR PROTEIN OS=Brucella
           melitensis GN=BMEI1520 PE=4 SV=1
          Length = 355

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 498 IISAIFSSLEQSISCLTVG--EKTALETRWQLIGFFYTAFLDVDATRIELQHFILLHFAG 325
           II   F+++  +++ L +G  E       W+L+GF + A L  +A   EL    LLH   
Sbjct: 38  IILGSFAAIMAALTLLVIGLCETYRQRIEWRLLGFLFIAALACNALVFELPRTSLLHRFL 97

Query: 324 HDELMAIIKVVT 289
           +   + +I++VT
Sbjct: 98  YQLPLCLIELVT 109


>tr|Q57EV2|Q57EV2_BRUAB GGDEF domain OS=Brucella abortus
           GN=BruAb1_0436 PE=4 SV=1
          Length = 381

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 498 IISAIFSSLEQSISCLTVG--EKTALETRWQLIGFFYTAFLDVDATRIELQHFILLHFAG 325
           II   F+++  +++ L +G  E       W+L+GF + A L  +A   EL    LLH   
Sbjct: 64  IILGSFAAIMAALTLLVIGLCETYRQRIEWRLLGFLFIAALACNALVFELPRTSLLHRFL 123

Query: 324 HDELMAIIKVVT 289
           +   + +I++VT
Sbjct: 124 YQLPLCLIELVT 135


>tr|Q2YMD4|Q2YMD4_BRUA2 GGDEF OS=Brucella abortus (strain 2308)
           GN=BAB1_0441 PE=4 SV=1
          Length = 381

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 498 IISAIFSSLEQSISCLTVG--EKTALETRWQLIGFFYTAFLDVDATRIELQHFILLHFAG 325
           II   F+++  +++ L +G  E       W+L+GF + A L  +A   EL    LLH   
Sbjct: 64  IILGSFAAIMAALTLLVIGLCETYRQRIEWRLLGFLFIAALACNALVFELPRTSLLHRFL 123

Query: 324 HDELMAIIKVVT 289
           +   + +I++VT
Sbjct: 124 YQLPLCLIELVT 135


>tr|B2S9Q4|B2S9Q4_BRUA1 GGDEF domain protein OS=Brucella abortus
           (strain S19) GN=BAbS19_I04060 PE=4 SV=1
          Length = 381

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 498 IISAIFSSLEQSISCLTVG--EKTALETRWQLIGFFYTAFLDVDATRIELQHFILLHFAG 325
           II   F+++  +++ L +G  E       W+L+GF + A L  +A   EL    LLH   
Sbjct: 64  IILGSFAAIMAALTLLVIGLCETYRQRIEWRLLGFLFIAALACNALVFELPRTSLLHRFL 123

Query: 324 HDELMAIIKVVT 289
           +   + +I++VT
Sbjct: 124 YQLPLCLIELVT 135


>tr|B0CK99|B0CK99_BRUSI Diguanylate cyclase (GGDEF) domain
           OS=Brucella suis (strain ATCC 23445 / NCTC 10510)
           GN=BSUIS_A0439 PE=4 SV=1
          Length = 381

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 498 IISAIFSSLEQSISCLTVG--EKTALETRWQLIGFFYTAFLDVDATRIELQHFILLHFAG 325
           II   F+++  +++ L +G  E       W+L+GF + A L  +A   EL    LLH   
Sbjct: 64  IILGSFAAIMAALTLLVIGLCETYRQRIEWRLLGFLFIAALACNALVFELPRTSLLHRFL 123

Query: 324 HDELMAIIKVVT 289
           +   + +I++VT
Sbjct: 124 YQLPLCLIELVT 135


>tr|A9M8I8|A9M8I8_BRUC2 Diguanylate cyclase (GGDEF) domain
           OS=Brucella canis (strain ATCC 23365 / NCTC 10854)
           GN=BCAN_A0418 PE=4 SV=1
          Length = 381

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 498 IISAIFSSLEQSISCLTVG--EKTALETRWQLIGFFYTAFLDVDATRIELQHFILLHFAG 325
           II   F+++  +++ L +G  E       W+L+GF + A L  +A   EL    LLH   
Sbjct: 64  IILGSFAAIMAALTLLVIGLCETYRQRIEWRLLGFLFIAALACNALVFELPRTSLLHRFL 123

Query: 324 HDELMAIIKVVT 289
           +   + +I++VT
Sbjct: 124 YQLPLCLIELVT 135