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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915772
Clone id YMU001_000076_F06
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000076_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGAGGAAAACCTCGCATTCGCATTCACTGAAAAGAGCCTGAGCTTTTACTGCCTGAGCCT
GTTGGGAATATCCTGCAATCAATGCATTTTAAAAAATGACAAAGCTCATGAAAATAATAT
CTGCCTTTACAAGGACACCACAGTACGGCATACATGTGCCCAAAGCAGTGCCGAGAATGA
CACCTTCTCTTAGCAATTCGACTAGCAACCTTCTTATGGAAGGTTTTTTACCCATGTCAC
CGTGTGTGTAATGCCATGTGCATTCAAGATACAAGCATGGTTGATTGCATTTGAATAGAG
ACACTTGGTTTGCATCCTCTTGAAAAACAGCACAGAGCTTCCTGGCCCTGCACTTATTGG
TCAATCCATAGGAGACCACATCAATCTCAGCAAAATCATTTTGCCATTCTGCAATGCACC
ATATTTAGCATAAATGCCAGCCAATGCATTGTGATACTTTTCAAGATCCCCCGACTCAAA
ACGTCATTATGCATTTGTCCATCCAATTGTCAGCTTCTTATGTAATGACAAAA
■■Homology search results ■■ -
sp_hit_id Q9FXB9
Definition sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana
Align length 53
Score (bit) 31.2
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915772|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_F06.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protei...    31   3.3  
sp|Q54RK5|ENOA_DICDI Enolase A OS=Dictyostelium discoideum GN=en...    30   5.6  

>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-H69 PE=2 SV=1
          Length = 704

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -2

Query: 169 TALGTCMPYCGVLVKADIIFMSF----VIF*NALIAGYSQQAQAVKAQALFSE 23
           + L T    CG LVKA ++F  F    +I  N++I+GY+      +A  +F E
Sbjct: 370 SVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHE 422


>sp|Q54RK5|ENOA_DICDI Enolase A OS=Dictyostelium discoideum GN=enoA
           PE=3 SV=1
          Length = 434

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 320 LKNSTELPGPALIGQSIGDHINLSKIILPFCNAPYLA*MPANAL 451
           +KN  E+  PA+IG+S+ D   + K+++     P    + ANA+
Sbjct: 71  IKNILEVIQPAVIGKSVSDQAAIDKLMIDLDGTPNKGKLGANAI 114
tr_hit_id B8LQA8
Definition tr|B8LQA8|B8LQA8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 55
Score (bit) 37.7
E-value 0.37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915772|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_F06.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQA8|B8LQA8_PICSI Putative uncharacterized protein OS=Picea...    38   0.37 
tr|Q9LN51|Q9LN51_ARATH F18O14.19 OS=Arabidopsis thaliana PE=4 SV=1     35   3.2  
tr|A9RSU9|A9RSU9_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  
tr|B6LMI5|B6LMI5_BRAFL Putative uncharacterized protein OS=Branc...    34   5.4  
tr|Q7X912|Q7X912_ORYSJ OSJNBb0039F02.6 protein OS=Oryza sativa s...    33   7.0  
tr|Q6Z236|Q6Z236_ORYSJ Os08g0481000 protein OS=Oryza sativa subs...    33   9.2  
tr|Q2A9N8|Q2A9N8_BRAOL PPR repeat containing protein OS=Brassica...    33   9.2  
tr|A3BU65|A3BU65_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.2  

>tr|B8LQA8|B8LQA8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 795

 Score = 37.7 bits (86), Expect = 0.37
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -2

Query: 169 TALGTCMPYCGVLVKADIIFMSF----VIF*NALIAGYSQQAQAVKAQALFSECE 17
           TAL +    CG L  A  +F       V+  NA+IAGYSQ  Q  +A ALFSE +
Sbjct: 159 TALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ 213


>tr|Q9LN51|Q9LN51_ARATH F18O14.19 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1158

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +2

Query: 8    NLAFAFTEKSLSFYCLSLLGISCNQ----CILKNDKAHENNICLYKDTTVRHTC 157
            NL    T   + F C  +L I C+     C  KNDK H  ++C  ++T+ R+ C
Sbjct: 986  NLKILLTSPEIPFVCEFVLDIKCSVLPKICAHKNDKDHFLSLCYGENTSERYWC 1039


>tr|A9RSU9|A9RSU9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_177829 PE=4 SV=1
          Length = 527

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
 Frame = -3

Query: 450 NALAGIYAKYGALQNGKMILLRLM------WSPMD*PISA-GPGSSVL-FFKRMQTKCLY 295
           NAL  +YAK G++ + +++  ++       W+ M   ++  G G      F RM+ + + 
Sbjct: 343 NALVHMYAKSGSIDDARLVFDQMSVRNVFTWNAMIGGLAQHGCGQEAFSLFLRMRREGVV 402

Query: 294 SNAINHACILNAHGITHTVTWVKNL 220
            +AI +  ILNA   T  + WVK +
Sbjct: 403 PDAITYMSILNASASTGALGWVKEV 427


>tr|B6LMI5|B6LMI5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_72332 PE=4 SV=1
          Length = 651

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 244 VCNAMCIQDTSMVDCI*IETLGLHPLEKQHRASWPCT-YWSIHRRP 378
           +CN    + T +  C+  +T+ LH L + H  +W  T +W  H  P
Sbjct: 315 ICNVRIFKTTDVQRCLANKTVYLHVLRRGHNTNWNVTVHWRFHHAP 360


>tr|Q7X912|Q7X912_ORYSJ OSJNBb0039F02.6 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBb0039F02.6 PE=4 SV=1
          Length = 169

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 62  LGISCNQCILKNDKAHENNICLYKDTTVRHTCAQSSAEN 178
           +G  CN+C+ K+   H+ N  +    T R TC + S++N
Sbjct: 52  IGFRCNKCMKKDSSLHDQNQHMTNVPTDRSTCLKESSDN 90


>tr|Q6Z236|Q6Z236_ORYSJ Os08g0481000 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0092C08.13-1 PE=2 SV=1
          Length = 563

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -2

Query: 166 ALGTCMPYCGVLVKADIIFMSF----VIF*NALIAGYSQQAQAVKAQALFSECE 17
           AL T    CG + +++++FMS     ++  N +IA Y+Q  +  K  ALF E E
Sbjct: 309 ALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEME 362


>tr|Q2A9N8|Q2A9N8_BRAOL PPR repeat containing protein OS=Brassica
           oleracea GN=26.t00029 PE=4 SV=1
          Length = 583

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
 Frame = -2

Query: 142 CGVLVKADIIFMSF----VIF*NALIAGYSQQAQAVKAQALFSECECEVFL 2
           CG+L +A+++F +     +I  NA+I GY++   + +A  LFS+ + E FL
Sbjct: 375 CGMLKQAELMFWTMPRKNLIAWNAMIYGYARNGDSTEAIKLFSQLKQERFL 425


>tr|A3BU65|A3BU65_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_026587 PE=4 SV=1
          Length = 522

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -2

Query: 166 ALGTCMPYCGVLVKADIIFMSF----VIF*NALIAGYSQQAQAVKAQALFSECE 17
           AL T    CG + +++++FMS     ++  N +IA Y+Q  +  K  ALF E E
Sbjct: 268 ALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEME 321