BP915773 |
Clone id |
YMU001_000076_F08 |
Library |
YMU01 |
Length |
531 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000076_F08. |
Accession |
BP915773 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1602Contig1 |
Sequence |
CATGGGGAAAATGTGCAACCTCTAAAGAAATGGTACAAAATCCATGATACAGATACAGAT CATATGCACAACCGGGTTTCCAAAAATTGAGCACCAGAGGTGACTTTGACGTAAGGCCTT TTCATAGATGTACGACTGGATGGGCACACTATCCCAAATCGGGCGGCTCGACACATACCA AAAACGTAGCACACCAGAGCTGGAAATTATACAATATGGGGTGTGATCCTAAGCACCGTT AATCTGCCCATAATACCTCTGCATAGTAACAAAACCAAGATCAGTGATGAGGAGGTGAAG AATACCTCATTTCGATGATCCACTGAGGACCTCAGTCGGTGGAAGAAGGGGACTGTCAAG CTGGTAAAGGTTCAGTGCAGGGCCGACAAACCGAAACGCGATCCAACCTCCCACGATCAC TAAAATTGCAGCATAGGCAATCTTGTTCAGCCAGAAAAGGGCTCCCTTTTCACCAACGTA AATTTCCCATGCCTTCTCTGCGAGAGTCATGGACTCCCAATCCTTCGGCGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q3ZBJ8 |
Definition |
sp|Q3ZBJ8|MFRN1_BOVIN Mitoferrin-1 OS=Bos taurus |
Align length |
65 |
Score (bit) |
34.3 |
E-value |
0.35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915773|Adiantum capillus-veneris mRNA, clone: YMU001_000076_F08. (515 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q3ZBJ8|MFRN1_BOVIN Mitoferrin-1 OS=Bos taurus GN=SLC25A37 PE=... 34 0.35 sp|Q66H23|MFRN1_RAT Mitoferrin-1 OS=Rattus norvegicus GN=Slc25a3... 33 0.79 sp|Q920G8|MFRN1_MOUSE Mitoferrin-1 OS=Mus musculus GN=Slc25a37 P... 33 0.79 sp|Q9NYZ2|MFRN1_HUMAN Mitoferrin-1 OS=Homo sapiens GN=SLC25A37 P... 33 0.79 sp|P36048|SN114_YEAST 114 kDa U5 small nuclear ribonucleoprotein... 33 1.0 sp|Q5UQE0|YR476_MIMIV Putative AAA family ATPase R476 OS=Acantha... 32 1.3 sp|Q5HQ52|CTAA_STAEQ Heme A synthase OS=Staphylococcus epidermid... 32 1.8 sp|Q8CPM2|CTAA_STAES Heme A synthase OS=Staphylococcus epidermid... 32 2.3 sp|Q8VXB5|HAK8_ORYSJ Putative potassium transporter 8 OS=Oryza s... 30 5.1 sp|P46324|YVRN_BACSU Uncharacterized ABC transporter permease yv... 30 8.7
>sp|Q3ZBJ8|MFRN1_BOVIN Mitoferrin-1 OS=Bos taurus GN=SLC25A37 PE=2 SV=1 Length = 171
Score = 34.3 bits (77), Expect = 0.35 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = +2
Query: 329 EGDCQAGKGSVQGRQTETRSNLPRSLKLQHRQSCSARKGLPFHQRKFPMPSLR---ESWT 499 +GD + G G + +E NLP S L + A G+ H +P+ S++ +S Sbjct: 18 DGDSRDGGGGCKDAGSEDYENLPTSASLSTHMTAGAMAGILEHSVMYPVDSVKTRMQSLN 77
Query: 500 PNPSA 514 P+P A Sbjct: 78 PDPKA 82
>sp|Q66H23|MFRN1_RAT Mitoferrin-1 OS=Rattus norvegicus GN=Slc25a37 PE=2 SV=1 Length = 338
Score = 33.1 bits (74), Expect = 0.79 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = +2
Query: 329 EGDCQAGKGSVQGRQTETRSNLPRSLKLQHRQSCSARKGLPFHQRKFPMPSLR---ESWT 499 +GDC+ G + +E NLP S + + A G+ H +P+ S++ +S Sbjct: 18 DGDCRDGGCGSKDAGSEDYENLPTSASVSTHMTAGAMAGILEHSIMYPVDSVKTRMQSLN 77
Query: 500 PNPSA 514 P+P A Sbjct: 78 PDPKA 82
>sp|Q920G8|MFRN1_MOUSE Mitoferrin-1 OS=Mus musculus GN=Slc25a37 PE=2 SV=1 Length = 338
Score = 33.1 bits (74), Expect = 0.79 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = +2
Query: 329 EGDCQAGKGSVQGRQTETRSNLPRSLKLQHRQSCSARKGLPFHQRKFPMPSLR---ESWT 499 +GDC+ G + +E NLP S + + A G+ H +P+ S++ +S Sbjct: 18 DGDCRDGGCGSKDAGSEDYENLPTSASVSTHMTAGAMAGILEHSIMYPVDSVKTRMQSLN 77
Query: 500 PNPSA 514 P+P A Sbjct: 78 PDPKA 82
>sp|Q9NYZ2|MFRN1_HUMAN Mitoferrin-1 OS=Homo sapiens GN=SLC25A37 PE=1 SV=2 Length = 338
Score = 33.1 bits (74), Expect = 0.79 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = +2
Query: 329 EGDCQAGKGSVQGRQTETRSNLPRSLKLQHRQSCSARKGLPFHQRKFPMPSLR---ESWT 499 +GD + G G +E NLP S + + A G+ H +P+ S++ +S + Sbjct: 18 DGDSRDGGGGKDATGSEDYENLPTSASVSTHMTAGAMAGILEHSVMYPVDSVKTRMQSLS 77
Query: 500 PNPSA 514 P+P A Sbjct: 78 PDPKA 82
>sp|P36048|SN114_YEAST 114 kDa U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae GN=SNU114 PE=1 SV=1 Length = 1008
Score = 32.7 bits (73), Expect = 1.0 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +3
Query: 75 APEVTLT*GLFIDVRLDGHTIPNRAARHIPKT*HTRAGNYTIWGVILSTVNLPII-PLHS 251 +P+ L + +L HTI + ++IPKT + R ++ + +N+ +I PLHS Sbjct: 85 SPQTPLVEPVTERTKLQEHTIFTQLKKNIPKTRYNRDYMLSMANIPERIINVGVIGPLHS 144
Query: 252 NKTKISD 272 KT + D Sbjct: 145 GKTSLMD 151
>sp|Q5UQE0|YR476_MIMIV Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1 Length = 855
Score = 32.3 bits (72), Expect = 1.3 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +3
Query: 141 NRAARHIPKT*HTRAGNYTIWGVILSTVNLPIIPLHSNKTKISDEEVKNTSF-R*STEDL 317 N++ H+ K YT +G+I S N+ +P +NK+ + + V+ T + ++L Sbjct: 511 NKSKNHLDKI----KKKYTTYGIITSNTNIKFVPAKANKSYVINNSVEQTEISKNPVQEL 566
Query: 318 SRWKKGTVKLVKVQCR 365 ++ G K ++ R Sbjct: 567 EKYVGGISKELETVVR 582
>sp|Q5HQ52|CTAA_STAEQ Heme A synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ctaA PE=3 SV=1 Length = 302
Score = 32.0 bits (71), Expect = 1.8 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = -2
Query: 397 WEVGSRFGLSALH*TFTSLTVPFFHRLRSSVDHRNEVFFTSSSLILVLLLCRGIMGRLTV 218 W S G++ + TF + + F H +++ D+R + ++S ILV+L + I G L+V Sbjct: 209 WVQFSHRGMALI--TFIWIMITFIHAIKNYSDNRTVRYGYTASFILVIL--QVITGALSV 264
Query: 217 L-RITPHIV*FPAL-VCYVFGM 158 + + I F AL + Y+FGM Sbjct: 265 ITNVNLIIALFHALFITYLFGM 286
>sp|Q8CPM2|CTAA_STAES Heme A synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ctaA PE=3 SV=1 Length = 302
Score = 31.6 bits (70), Expect = 2.3 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = -2
Query: 397 WEVGSRFGLSALH*TFTSLTVPFFHRLRSSVDHRNEVFFTSSSLILVLLLCRGIMGRLTV 218 W S G++ + TF + + F H +++ D+R + ++S ILV+L + I G L+V Sbjct: 209 WVQFSHRGMAFI--TFIWIMITFIHAIKNYSDNRTVRYGYTASFILVIL--QVITGALSV 264
Query: 217 L-RITPHIV*FPAL-VCYVFGM 158 + + I F AL + Y+FGM Sbjct: 265 ITNVNLIIALFHALFITYLFGM 286
>sp|Q8VXB5|HAK8_ORYSJ Putative potassium transporter 8 OS=Oryza sativa subsp. japonica GN=HAK8 PE=3 SV=2 Length = 793
Score = 30.4 bits (67), Expect = 5.1 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Frame = -2
Query: 388 GSRFGLSALH*TF-----TSLTVPFFHRLRSSVDHRNEVFFTSSSLILVLLLCRGIMGRL 224 G F LS H + T + + F L+ HR V F + ++L L+C +G Sbjct: 180 GLEFSLSKDHREYAVIPITCVILAFLFALQHYGTHR--VGFLFAPIVLAWLICMSALGLY 237
Query: 223 TVLRITPHIV*FPAL-VCYVFGMCRAAR 143 ++ PH+ + AL CY+F + R Sbjct: 238 NIIHWNPHV--YQALNPCYMFKFLKKTR 263
>sp|P46324|YVRN_BACSU Uncharacterized ABC transporter permease yvrN OS=Bacillus subtilis GN=yvrN PE=3 SV=2 Length = 416
Score = 29.6 bits (65), Expect = 8.7 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = -2
Query: 289 VFFTSSSLILVLLLCRGIMGRLTVLRITPHIV*FPALV-CYVFGMCRAARFGIVCPSSRT 113 V TS IL +L GI LTV+ P IV PA+V +F M FG++ PS + Sbjct: 346 VVLTSIGGILGVLAGFGIAKLLTVIFPMPFIVSIPAVVGALIFSMAVGIIFGLL-PSIKA 404
Query: 112 SMKRP 98 S +P Sbjct: 405 SKLQP 409
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SQL7 |
Definition |
tr|A9SQL7|A9SQL7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
73 |
Score (bit) |
116.0 |
E-value |
6.0e-25 |
Report |
|