BP915775 |
Clone id |
YMU001_000076_F10 |
Library |
YMU01 |
Length |
565 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000076_F10. |
Accession |
BP915775 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CATTACTCAAACCTTGCTGTTAATGATGGGTGCAAAACCAAGGACATAAAATACCCTTTG TAAAGGGCTAAATTAGTATACCACACTCTAATATGGACCGGGGGCCCATGTTGGTTGAGC CCTTTGGTTCTGCTGATAAGAACCGATTTGGGTTCCCAGGGCTCCCATAGACCCCAAGGC TTGCTGTTGTTGGAGTAGCTGATGAGCACTTGCGCTTGAGCCTGACTGTTGCGGATGATA AATATTACCGCCATACACAGCTGCAGGATGAGTGTGAGTTAGTAGTGATTGCGTCTGGGA ATACCTGGTAGGTTGACTTTGGCCAGGCACATTATAGTATGAGCTCCCTTGTGCTTCTCT GGCCAGCTGGGACTGAAGCCAAACAGAAGGTCCATCAATCTGTTGGCTTGGTAGGTACAT GGTGTTGTCCTTGTAGTGTTGTGTAGCAGCATCATCAAAGGTGGACGTGTTTCCTGATGT AACTGGCAAGTTCGCAGTTGGTTGGCTATTGGGATAACCTCCATAACCTAAACTACTCGG AGACATTGTATTATGTATTCCACCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P04052 |
Definition |
sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila melanogaster |
Align length |
117 |
Score (bit) |
37.4 |
E-value |
0.052 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TBI8 |
Definition |
tr|A9TBI8|A9TBI8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
113 |
Score (bit) |
82.4 |
E-value |
2.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915775|Adiantum capillus-veneris mRNA, clone: YMU001_000076_F10. (565 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TBI8|A9TBI8_PHYPA Predicted protein OS=Physcomitrella paten... 82 2e-14 tr|A9SKJ9|A9SKJ9_PHYPA Predicted protein OS=Physcomitrella paten... 59 1e-07 tr|Q8L7T4|Q8L7T4_ARATH AT3g13990/MDC16_11 OS=Arabidopsis thalian... 58 3e-07 tr|Q0WUK0|Q0WUK0_ARATH Putative uncharacterized protein At3g1399... 58 3e-07 tr|A7Q2X5|A7Q2X5_VITVI Chromosome chr12 scaffold_47, whole genom... 55 2e-06 tr|Q9LVK1|Q9LVK1_ARATH Gb|AAF13084.1 OS=Arabidopsis thaliana PE=... 52 2e-05 tr|Q688W7|Q688W7_ORYSJ Os05g0566900 protein OS=Oryza sativa subs... 50 1e-04 tr|B8AWS4|B8AWS4_ORYSI Putative uncharacterized protein OS=Oryza... 50 1e-04 tr|A3B6W5|A3B6W5_ORYSJ Putative uncharacterized protein OS=Oryza... 50 1e-04 tr|A7P6K8|A7P6K8_VITVI Chromosome chr9 scaffold_7, whole genome ... 49 3e-04 tr|A5AXI2|A5AXI2_VITVI Putative uncharacterized protein OS=Vitis... 49 3e-04 tr|Q6QP56|Q6QP56_MAIZE Putative uncharacterized protein OS=Zea m... 48 3e-04 tr|Q852G6|Q852G6_ORYSJ Putative uncharacterized protein (Fragmen... 46 0.002 tr|Q75K31|Q75K31_ORYSJ Os03g0411000 protein OS=Oryza sativa subs... 46 0.002 tr|Q5SN38|Q5SN38_ORYSJ TA9 protein-like (Os01g0663800 protein) O... 46 0.002 tr|Q5SN37|Q5SN37_ORYSJ TA9 protein-like OS=Oryza sativa subsp. j... 46 0.002 tr|B8A764|B8A764_ORYSI Putative uncharacterized protein OS=Oryza... 46 0.002 tr|A2ZW97|A2ZW97_ORYSJ Putative uncharacterized protein OS=Oryza... 46 0.002 tr|Q8W0T8|Q8W0T8_SORBI Gb protein OS=Sorghum bicolor GN=SB35P03.... 45 0.004 tr|Q70KT1|Q70KT1_ORYSJ TA9 protein (Fragment) OS=Oryza sativa su... 44 0.006 tr|A3AJ11|A3AJ11_ORYSJ Putative uncharacterized protein OS=Oryza... 43 0.014 tr|A2XHW6|A2XHW6_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.014 tr|A7Q9C6|A7Q9C6_VITVI Chromosome chr19 scaffold_66, whole genom... 42 0.023 tr|A5AXX2|A5AXX2_VITVI Putative uncharacterized protein OS=Vitis... 42 0.023 tr|B4FXM2|B4FXM2_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.040 tr|Q69NN2|Q69NN2_ORYSJ Os06g0206100 protein OS=Oryza sativa subs... 40 0.089 tr|B8B3X0|B8B3X0_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.089 tr|A3B9G7|A3B9G7_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.089 tr|Q9SVV7|Q9SVV7_ARATH Putative uncharacterized protein F15J5.12... 39 0.15 tr|Q9C7R4|Q9C7R4_ARATH Putative uncharacterized protein F15D2.28... 39 0.20
>tr|A9TBI8|A9TBI8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_169147 PE=4 SV=1 Length = 1282
Score = 82.4 bits (202), Expect = 2e-14 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 9/113 (7%) Frame = -2
Query: 543 SPSSLGYGGYPNSQP--TANLPVTSGNTSTFDDAATQHYKDNTMYLPSQQIDGPSVWLQS 370 +P S+GY Y + ++ VT+G S ++D YKD+T+Y+PSQQ DG +VW+Q+ Sbjct: 981 APYSVGYKDYITTPSGYASSPAVTAGTNSGYEDVNASPYKDSTLYIPSQQGDGSTVWIQT 1040
Query: 369 QLARE------AQGSSYYNVPGQSQPTRYSQTQS-LLTHTHPAAVYGGNIYHP 232 + R+ Q SSYYNV GQ Q + Y+ +Q H HP A Y N+YHP Sbjct: 1041 TMLRDMGPSGSMQTSSYYNVAGQGQLSGYAHSQQPTHGHAHPNAAY-SNLYHP 1092
>tr|A9SKJ9|A9SKJ9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_80661 PE=4 SV=1 Length = 368
Score = 59.3 bits (142), Expect = 1e-07 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 9/93 (9%) Frame = -2
Query: 525 YGGYPN--SQPTANLPVTSGNTSTFDDAATQHYKDNTMYLPSQQIDGPSVWLQSQLAR-- 358 YGGY S ++ VT+GN S ++D T HYKD+ +Y+P Q D +VW+++ + R Sbjct: 192 YGGYTTTLSGYASSPAVTAGNISGYEDVYTSHYKDSALYIPRQHGDSVTVWIEAAMLRGM 251
Query: 357 ----EAQGSSYYNVPGQSQ-PTRYSQTQSLLTH 274 Q S YYN+ GQ + T S + L H Sbjct: 252 ELLGTIQTSYYYNLAGQDRASTEPSDPSTALEH 284
>tr|Q8L7T4|Q8L7T4_ARATH AT3g13990/MDC16_11 OS=Arabidopsis thaliana PE=2 SV=1 Length = 848
Score = 58.2 bits (139), Expect = 3e-07 Identities = 44/166 (26%), Positives = 65/166 (39%), Gaps = 14/166 (8%) Frame = -2
Query: 561 GIHNTMSP----SSLGYGGY--PNSQPTANLPVTSGNTSTFDDAATQHYKDNTMYLPSQQ 400 GIH P G+G Y PN PT N P GN + +D + K +Y+P+ Q Sbjct: 680 GIHQQYKPVPTGGPAGFGTYNNPNGYPT-NPPNVVGNATGLEDPSRMINKHGNIYVPNPQ 738
Query: 399 IDGPSVWLQSQLAREAQGSSYYNVPGQSQPTRYSQTQSLLTHTHPAA----VYGGNIYHP 232 + +W+Q+ + S YYNV GQS Y + + +P A + ++HP Sbjct: 739 AETSEIWMQNPRDLSSLQSPYYNVAGQSPHGAYLSSHTAHQSFNPTAQSSHMQFQGLFHP 798
Query: 231 ----XXXXXXXXXXXXXXXXXXXXXXXXXGTQIGSYQQNQRAQPTW 106 +QIG+YQQ+Q P W Sbjct: 799 SQPGTMANPHHMGPGLSGNVGVGVVPSPPPSQIGTYQQSQLGHPNW 844
>tr|Q0WUK0|Q0WUK0_ARATH Putative uncharacterized protein At3g13990 OS=Arabidopsis thaliana GN=At3g13990 PE=2 SV=1 Length = 847
Score = 58.2 bits (139), Expect = 3e-07 Identities = 44/166 (26%), Positives = 65/166 (39%), Gaps = 14/166 (8%) Frame = -2
Query: 561 GIHNTMSP----SSLGYGGY--PNSQPTANLPVTSGNTSTFDDAATQHYKDNTMYLPSQQ 400 GIH P G+G Y PN PT N P GN + +D + K +Y+P+ Q Sbjct: 679 GIHQQYKPVPTGGPAGFGTYNNPNGYPT-NPPNVVGNATGLEDPSRMINKHGNIYVPNPQ 737
Query: 399 IDGPSVWLQSQLAREAQGSSYYNVPGQSQPTRYSQTQSLLTHTHPAA----VYGGNIYHP 232 + +W+Q+ + S YYNV GQS Y + + +P A + ++HP Sbjct: 738 AETSEIWMQNPRDLSSLQSPYYNVAGQSPHGAYLSSHTAHQSFNPTAQSSHMQFQGLFHP 797
Query: 231 ----XXXXXXXXXXXXXXXXXXXXXXXXXGTQIGSYQQNQRAQPTW 106 +QIG+YQQ+Q P W Sbjct: 798 SQPGTMANPHHMGPGLSGNVGVGVVPSPPPSQIGTYQQSQLGHPNW 843
>tr|A7Q2X5|A7Q2X5_VITVI Chromosome chr12 scaffold_47, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029067001 PE=4 SV=1 Length = 894
Score = 55.5 bits (132), Expect = 2e-06 Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 5/146 (3%) Frame = -2
Query: 528 GYGGYPNSQPTAN--LPVTSGNTSTFDDAATQHYKDNTMYLPSQQIDGPSVWLQSQLARE 355 GYG Y +S N +GN++ ++ A +K+N++Y+ QQ +G +VW+ + R+ Sbjct: 753 GYGPYGSSPAGYNPSSAAAAGNSTANEEIAASQFKENSVYITGQQSEGSAVWIAAP-GRD 811
Query: 354 AQG---SSYYNVPGQSQPTRYSQTQSLLTHTHPAAVYGGNIYHPXXXXXXXXXXXXXXXX 184 G SS+YN+P QSQ ++ TQ P A IYHP Sbjct: 812 ISGLPASSFYNLPPQSQHVAFTPTQG---GHGPIA----GIYHPAQAVTATVHPLLQQSQ 864
Query: 183 XXXXXXXXXGTQIGSYQQNQRAQPTW 106 G YQQ Q AQ W Sbjct: 865 TMAGAVDMVGPTGSVYQQPQHAQINW 890
>tr|Q9LVK1|Q9LVK1_ARATH Gb|AAF13084.1 OS=Arabidopsis thaliana PE=4 SV=1 Length = 870
Score = 52.4 bits (124), Expect = 2e-05 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Frame = -2
Query: 561 GIHNTMSP----SSLGYGGY--PNSQPTANLPVTSGNTSTFDDAATQHYKDNTMYLPSQQ 400 GIH P G+G Y PN PT N P GN + +D + K +Y+P+ Q Sbjct: 679 GIHQQYKPVPTGGPAGFGTYNNPNGYPT-NPPNVVGNATGLEDPSRMINKHGNIYVPNPQ 737
Query: 399 IDGPSVWLQSQLAREAQGSSYYNVPGQSQPTRYSQTQSLLTHTHPAA 259 + +W+Q+ + S YYNV GQS Y + + +P A Sbjct: 738 AETSEIWMQNPRDLSSLQSPYYNVAGQSPHGAYLSSHTAHQSFNPTA 784
>tr|Q688W7|Q688W7_ORYSJ Os05g0566900 protein OS=Oryza sativa subsp. japonica GN=OJ1781_H11.10 PE=2 SV=1 Length = 852
Score = 49.7 bits (117), Expect = 1e-04 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 11/112 (9%) Frame = -2
Query: 540 PSSL--GYGGYPNSQP-----TANLPVTSGNTST-FDDAATQHYKDNTMYLPSQQIDGPS 385 PSS+ GYGG+ +S T N S +T+ FD+A + YKD + Y+ QQ D + Sbjct: 704 PSSVISGYGGFGSSSNLPGNFTLNQNAASASTNLGFDEALSTPYKDPSQYMALQQGDNSA 763
Query: 384 VWLQSQLAREAQG---SSYYNVPGQSQPTRYSQTQSLLTHTHPAAVYGGNIY 238 +WL +R S +Y GQSQ + Q Q H+ +GG+ Y Sbjct: 764 MWLHGAGSRATSALPPSHFYGFQGQSQQGGFRQAQQPQQHSQ----FGGHGY 811
>tr|B8AWS4|B8AWS4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_21014 PE=4 SV=1 Length = 852
Score = 49.7 bits (117), Expect = 1e-04 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 11/112 (9%) Frame = -2
Query: 540 PSSL--GYGGYPNSQP-----TANLPVTSGNTST-FDDAATQHYKDNTMYLPSQQIDGPS 385 PSS+ GYGG+ +S T N S +T+ FD+A + YKD + Y+ QQ D + Sbjct: 704 PSSVISGYGGFGSSSNLPGNFTLNQNAASASTNLGFDEALSTPYKDPSQYMALQQGDNSA 763
Query: 384 VWLQSQLAREAQG---SSYYNVPGQSQPTRYSQTQSLLTHTHPAAVYGGNIY 238 +WL +R S +Y GQSQ + Q Q H+ +GG+ Y Sbjct: 764 MWLHGAGSRATSALPPSHFYGFQGQSQQGGFRQAQQPQQHSQ----FGGHGY 811
>tr|A3B6W5|A3B6W5_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_018787 PE=4 SV=1 Length = 773
Score = 49.7 bits (117), Expect = 1e-04 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 11/112 (9%) Frame = -2
Query: 540 PSSL--GYGGYPNSQP-----TANLPVTSGNTST-FDDAATQHYKDNTMYLPSQQIDGPS 385 PSS+ GYGG+ +S T N S +T+ FD+A + YKD + Y+ QQ D + Sbjct: 625 PSSVISGYGGFGSSSNLPGNFTLNQNAASASTNLGFDEALSTPYKDPSQYMALQQGDNSA 684
Query: 384 VWLQSQLAREAQG---SSYYNVPGQSQPTRYSQTQSLLTHTHPAAVYGGNIY 238 +WL +R S +Y GQSQ + Q Q H+ +GG+ Y Sbjct: 685 MWLHGAGSRATSALPPSHFYGFQGQSQQGGFRQAQQPQQHSQ----FGGHGY 732
>tr|A7P6K8|A7P6K8_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034109001 PE=4 SV=1 Length = 841
Score = 48.5 bits (114), Expect = 3e-04 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 11/113 (9%) Frame = -2
Query: 537 SSLGYGGYPNSQPTA-NLPVTSGNTSTFDDAATQHYKDNTMYLPSQQIDGPSVWLQSQLA 361 S G+G + N A N P G+ + +D++ YKD +Y+P+ Q + +W+Q+ Sbjct: 680 SPTGFGNFTNPTGYAINAPGVVGSATGLEDSSRLKYKDGNIYVPNPQAETSEIWIQN--P 737
Query: 360 RE---AQGSSYYNVPGQSQPTRY--SQTQSLLTHTHPAAVYGGN-----IYHP 232 RE Q + YYN+P Q+ Y S T + AA + +YHP Sbjct: 738 RELPGLQSAPYYNMPAQTPHAAYMPSHTGHASFNAAAAAAQSSHMQFPGLYHP 790
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