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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915786
Clone id YMU001_000076_G09
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000076_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCTAACAAGCCAATTAAAGAATCTTTCACATGAGGGTGTTGTTCTTGGTATTTCAAAGA
GTAAATTTACTCCTTTACCAAACTAAGATAGCTATACGAATGAAAAAATATGGTACCTCC
TTGTCCTCTCCCTTAGCTAACATCTTTAAGACTTGTTCAACAAGGCTTCTAGATTTGTTG
GGGTCAATGATACCATAAACTTGACTAATCTCCTTCTATGTGTGCTTTGAAAGGAAGGAG
AGAGAGGCAGATTTGTCTGAGACTCCTATCTGCCTGCTCTGCCCACGTGTCTTCTTCTCC
CTTCGTCCACTTGACTGGCTCCCCGCTATCTCCATGAAGCCTTCCCCTTTTCCATTTGGT
GGCATCGGCTTAGATACCCATTAATAAACCACTTTCAAAATTGACCACACATACGGCATA
CTTGAATACCCATACTAATACAGATCAGTTATGGATGTTGTACTTGGCAAATATACTTGC
TCTTCTATTCAATGTTCGGGAAAGATGTGTG
■■Homology search results ■■ -
sp_hit_id Q75DS1
Definition sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii
Align length 41
Score (bit) 31.6
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915786|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_G09.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 ...    32   2.2  
sp|Q9H2G9|GO45_HUMAN Golgin-45 OS=Homo sapiens GN=BLZF1 PE=1 SV=2      31   3.9  

>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2
            OS=Ashbya gossypii GN=RPA2 PE=3 SV=1
          Length = 1198

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 399  FESGLLMGI*ADATKWKRGRLHGDSGEPVKWTKGEEDTWAE 277
            F S + +G+  ++   K G LHG + +   WT  EEDT A+
Sbjct: 949  FPSRMTIGMFVESLAGKAGALHGIAQDATPWTFSEEDTPAD 989


>sp|Q9H2G9|GO45_HUMAN Golgin-45 OS=Homo sapiens GN=BLZF1 PE=1 SV=2
          Length = 400

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 263 VSDKSASLSFLSKHT*KEISQVYGIIDPNKSRSLVEQVLKMLAKGE 126
           + +K+  +  L  H  + + Q  G+I+PNK  S V+ VL+ L   E
Sbjct: 92  IPNKNTKVKSLGHHKGEFLGQSEGVIEPNKELSEVKNVLEKLKNSE 137
tr_hit_id A9RTW1
Definition tr|A9RTW1|A9RTW1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 80
Score (bit) 42.0
E-value 0.017
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915786|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_G09.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RTW1|A9RTW1_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.017
tr|B8AGX6|B8AGX6_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.050
tr|A3A293|A3A293_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.050
tr|A2WZV9|A2WZV9_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.050
tr|A5BZG5|A5BZG5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.55 
tr|A7QM75|A7QM75_VITVI Chromosome chr5 scaffold_124, whole genom...    36   1.2  
tr|A5AKZ4|A5AKZ4_VITVI Putative uncharacterized protein OS=Vitis...    34   3.7  
tr|A5DDC5|A5DDC5_PICGU Putative uncharacterized protein OS=Pichi...    34   4.7  
tr|A0LHN4|A0LHN4_SYNFM Putative uncharacterized protein OS=Syntr...    33   6.2  

>tr|A9RTW1|A9RTW1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_205535 PE=4 SV=1
          Length = 2180

 Score = 42.0 bits (97), Expect = 0.017
 Identities = 26/80 (32%), Positives = 42/80 (52%)
 Frame = -3

Query: 353 GKGEGFMEIAGSQSSGRREKKTRGQSRQIGVSDKSASLSFLSKHT*KEISQVYGIIDPNK 174
           G G+   + +  Q  G+ ++        + V D  A   +L +    +ISQ +G IDP +
Sbjct: 244 GDGQDTRQASAMQMGGQDDEDMEEADEGLNVQDIDAY--WLQR----KISQAHGDIDPQQ 297

Query: 173 SRSLVEQVLKMLAKGEDKEV 114
           S+ L E VL  LA+G+D+EV
Sbjct: 298 SQKLAEDVLSKLAEGDDREV 317


>tr|B8AGX6|B8AGX6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05507 PE=4 SV=1
          Length = 675

 Score = 40.4 bits (93), Expect = 0.050
 Identities = 25/82 (30%), Positives = 42/82 (51%)
 Frame = -3

Query: 359 PNGKGEGFMEIAGSQSSGRREKKTRGQSRQIGVSDKSASLSFLSKHT*KEISQVYGIIDP 180
           P     G M++ G       +    G +  I V D  A   +L +    ++SQ Y  IDP
Sbjct: 254 PESNAPGAMQMGGELDDDPMQNSNEGLT--INVQDIDAY--WLQR----KVSQAYEDIDP 305

Query: 179 NKSRSLVEQVLKMLAKGEDKEV 114
             S+ L E++LK++A+G+D++V
Sbjct: 306 QHSQKLAEEILKIIAEGDDRDV 327


>tr|A3A293|A3A293_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_004915 PE=4 SV=1
          Length = 2240

 Score = 40.4 bits (93), Expect = 0.050
 Identities = 25/82 (30%), Positives = 42/82 (51%)
 Frame = -3

Query: 359 PNGKGEGFMEIAGSQSSGRREKKTRGQSRQIGVSDKSASLSFLSKHT*KEISQVYGIIDP 180
           P     G M++ G       +    G +  I V D  A   +L +    ++SQ Y  IDP
Sbjct: 317 PESNAPGAMQMGGELDDDDMQNSNEGLT--INVQDIDAY--WLQR----KVSQAYEDIDP 368

Query: 179 NKSRSLVEQVLKMLAKGEDKEV 114
             S+ L E++LK++A+G+D++V
Sbjct: 369 QHSQKLAEEILKIIAEGDDRDV 390


>tr|A2WZV9|A2WZV9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05501 PE=4 SV=1
          Length = 2177

 Score = 40.4 bits (93), Expect = 0.050
 Identities = 25/82 (30%), Positives = 42/82 (51%)
 Frame = -3

Query: 359 PNGKGEGFMEIAGSQSSGRREKKTRGQSRQIGVSDKSASLSFLSKHT*KEISQVYGIIDP 180
           P     G M++ G       +    G +  I V D  A   +L +    ++SQ Y  IDP
Sbjct: 254 PESNAPGAMQMGGELDDDDMQNSNEGLT--INVQDIDAY--WLQR----KVSQAYEDIDP 305

Query: 179 NKSRSLVEQVLKMLAKGEDKEV 114
             S+ L E++LK++A+G+D++V
Sbjct: 306 QHSQKLAEEILKIIAEGDDRDV 327


>tr|A5BZG5|A5BZG5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042645 PE=4 SV=1
          Length = 2144

 Score = 37.0 bits (84), Expect = 0.55
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = -3

Query: 347 GEGFMEIAGSQSSGRREKKTRGQSRQIGVSDKSASLSFLSKHT*KEISQVYGI-IDPNKS 171
           G G M++ G       ++   G +  + V D  A   +L +    +ISQ Y   IDP + 
Sbjct: 251 GSGAMQMGGGIDDDDMQEANEGMT--LNVQDIDAY--WLQR----KISQAYEQQIDPQQC 302

Query: 170 RSLVEQVLKMLAKGEDKEV 114
           + L E+VLK+LA+G+D+EV
Sbjct: 303 QKLAEEVLKILAEGDDREV 321


>tr|A7QM75|A7QM75_VITVI Chromosome chr5 scaffold_124, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001949001
           PE=4 SV=1
          Length = 2072

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 18/34 (52%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
 Frame = -3

Query: 212 EISQVYGI-IDPNKSRSLVEQVLKMLAKGEDKEV 114
           +ISQ Y   IDP + + L E+VLK+LA+G+D+EV
Sbjct: 199 KISQAYEQQIDPQQCQKLAEEVLKILAEGDDREV 232


>tr|A5AKZ4|A5AKZ4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_025517 PE=4 SV=1
          Length = 646

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 401 LTTHTAYLNTHTNTDQLWMLYLANILALLFNV 496
           +TTH +YL      + LW LY+ +ILALL N+
Sbjct: 366 ITTHFSYLPLGVVDEVLWQLYIDDILALLLNI 397


>tr|A5DDC5|A5DDC5_PICGU Putative uncharacterized protein OS=Pichia
           guilliermondii GN=PGUG_01276 PE=4 SV=2
          Length = 716

 Score = 33.9 bits (76), Expect = 4.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 356 NGKGEGFMEIAGSQSSGRREKKTRGQSRQIGVSDKSASL 240
           NG GEGF  ++ SQ    + KK RG+ +++   D+S+ +
Sbjct: 3   NGSGEGFENVSESQLETPKPKKKRGRPKKVSPKDESSPI 41


>tr|A0LHN4|A0LHN4_SYNFM Putative uncharacterized protein
           OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
           MPOB) GN=Sfum_1244 PE=4 SV=1
          Length = 373

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 390 GLLMGI*ADATKWKRGRLHGDSGEP---VKWTKGEEDTWAEQADRSLRQICLS 241
           GLL+ +  D  KW+RG    +  EP   ++W    E  W E A RSL+ I ++
Sbjct: 31  GLLLRL-RDLHKWERGMAPWEEPEPHVLLEWVDARETYWEEIASRSLQPISMA 82