NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915792
Clone id YMU001_000076_H03
Library
Length 400
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000076_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATATGCAGAGGCTGCAAAATATCCTGATGCTAGGAGGAGTAAAATGATGCGAGTGAGAAT
GCAGGGATGAACGAGGGCAGATCTTGCTTGGGGTATTGAGTAGTTCCCTTGTGAGGATGT
TGGTCGACTACAAAGCAAACATGGAGCAGGATGTCTCAATGATGTAGTGAGACTATGAGT
GGCGCATATTGTGGCATATGGGGAGGCTGGCAACTAAATGTAGCTTTGTTGAGCCCACAG
GACCAACACATGCAATTGGGAATTGCTCAGTGAAATGTGTGTGCATGTGGGCTGTGCACC
TCTCTCATGATTGAAAAAGAAAAGAATAGAACTGAACAGGAGAGATTGCACAGGTGAAAC
TCTCTGCATCTGTTGTACTATTGAATAACATGAACTTGTA
■■Homology search results ■■ -
sp_hit_id P50217
Definition sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum
Align length 38
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915792|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_H03.
         (400 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum ...    30   2.8  
sp|P08500|UCRI_RHOCA Ubiquinol-cytochrome c reductase iron-sulfu...    29   8.3  

>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum
           tuberosum GN=ICDH-1 PE=2 SV=1
          Length = 416

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 274 FTEQFPIACVGPVGSTKLHLVASLPICHNMRHS*SHYI 161
           FTE+   AC+G V S K+    +L I H  + S  HY+
Sbjct: 357 FTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYL 394


>sp|P08500|UCRI_RHOCA Ubiquinol-cytochrome c reductase iron-sulfur
           subunit OS=Rhodobacter capsulatus GN=petA PE=1 SV=1
          Length = 191

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 242 TNTCNWELLSEMCVHVGCAPL 304
           TNT  W ++  +C H+GC P+
Sbjct: 121 TNTGEWLVMLGVCTHLGCVPM 141
tr_hit_id B0DKT8
Definition tr|B0DKT8|B0DKT8_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 103
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915792|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_H03.
         (400 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0DKT8|B0DKT8_LACBS Predicted protein OS=Laccaria bicolor (st...    35   1.4  
tr|B7C8E7|B7C8E7_9FIRM Putative uncharacterized protein OS=Eubac...    34   4.1  
tr|Q0V7G0|Q0V7G0_PHANO Putative uncharacterized protein OS=Phaeo...    33   9.1  

>tr|B0DKT8|B0DKT8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_330289 PE=4 SV=1
          Length = 327

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
 Frame = -3

Query: 353 LCNLSCSVLFFSFSIMREVHSPHAHTFH*AIPNCMCWSCGLNKATFSCQPPHMPQYAPLI 174
           LC LS S    S S+ R V   H H      P C C+    + +TF+   P +P +   +
Sbjct: 209 LCLLSSSPRVLSSSLTR-VRRTHTHPLSLVFPVCACFRP--SSSTFTVLTPPLPPHLQEV 265

Query: 173 VSLHH*DILLHVCFVVDQHPHKGTTQYPKQDLPSF-IPAFSLA 48
            +L H   + +   V  +  H G      +D+P+  + AF+ A
Sbjct: 266 PTLKHVYHVYYNSIVSCRSQHAGAPSTSLKDIPAIPVSAFAAA 308


>tr|B7C8E7|B7C8E7_9FIRM Putative uncharacterized protein
           OS=Eubacterium biforme DSM 3989 GN=EUBIFOR_00451 PE=4
           SV=1
          Length = 189

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 258 GNCSVKCVCMWAVHLSHD*KRKE 326
           GNC +K  CMW  H  HD KR E
Sbjct: 147 GNCELKVQCMWPSHAGHDYKRVE 169


>tr|Q0V7G0|Q0V7G0_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_00054 PE=4 SV=1
          Length = 201

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
 Frame = -2

Query: 309 HERGAQPTCTHISLSNSQLHVLVLWAQQSYI*L---PASPYATICATHSLT--TSLRHPA 145
           HE+ ++  C H   SN   +     + QSY      PA PYA     HS T  +  RHP+
Sbjct: 51  HEQSSR--CAHDHSSNIPNNFTRGASPQSYPYAHLSPAQPYAQASPAHSYTQASPARHPS 108

Query: 144 PCLL-----CSR-PTSSQGNYSIPQARSALVHP 64
           P        CS+  T + GN +I QA   + HP
Sbjct: 109 PSQYPISQSCSQGHTQTTGNSAIQQAPHWVYHP 141