BP915793
Clone id YMU001_000076_H04
Library
Length 570
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000076_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TGCATAGCTTGTTGAAATGAGTTGTAGTACCTTCAATTGGGACAAGAAAACCAGTAAGGG
ACAAGCCCATGTACACACACTAAGCTTCAAATTGCTCACTAAATGAGCTAAGTCCTGACT
AAGGCAGATCCAGTGATCAAGACAAGTAGAAGCCAACGGCACTTTAACTCCAGATTTGGA
GACGCAGATACAATCCCATAGGACACCTTGTCAATCAAGCTACGATAACATAAGTTGTTA
GCTCTATGATGAAAATTCCAGGAAAGTGGTGACAAAAGTCGGTTTTTGGGCACAACCTTA
CTGGGAAAATAAGTCAGGTTTTCCCGTGTTTCTCTCATCACAACAAAAGGCACGCTTCCC
TCCACATCTTAACAATCAACCAATATTTCACAAGCCTTTTGCACGACCCACTGCTTATAT
TTACACATTTCAGATTGATTTACAGAATAAGTGTTTGAGCAGTCCGTGGTAAATGTATGA
CTACCTTTATCATTCAAGGGTCTGCATGGCCAGCCAATTCCTCTTCGCTTGACAGATAGT
CTTCACTAACCTCCTCATCACTGCTGTCCT
■■Homology search results ■■ -
sp_hit_id Q21338
Definition sp|Q21338|SPT5H_CAEEL Transcription elongation factor SPT5 OS=Caenorhabditis elegans
Align length 88
Score (bit) 33.9
E-value 0.58
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915793|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_H04.
(570 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q21338|SPT5H_CAEEL Transcription elongation factor SPT5 OS=Ca... 34 0.58
sp|A5DM91|KYNU_PICGU Kynureninase OS=Pichia guilliermondii GN=BN... 32 2.2
sp|Q17QH9|IQCD_BOVIN IQ domain-containing protein D OS=Bos tauru... 31 3.8
sp|Q6F9N7|UBIC_ACIAD Probable chorismate--pyruvate lyase OS=Acin... 31 4.9
sp|Q66810|VGP_EBOIC Envelope glycoprotein OS=Ivory Coast ebolavi... 30 8.4

>sp|Q21338|SPT5H_CAEEL Transcription elongation factor SPT5
OS=Caenorhabditis elegans GN=spt-5 PE=2 SV=3
Length = 1208

Score = 33.9 bits (76), Expect = 0.58
Identities = 25/88 (28%), Positives = 38/88 (43%)
Frame = +2

Query: 152 ANGTLTPDLETQIQSHRTPCQSSYDNISC*LYDENSRKVVTKVGFWAQPYWENKSGFPVF 331
A+G TP + + RTP S DN YD++ R + P +++ S P +
Sbjct: 883 ADGARTPAYGST-EGGRTPAYGSMDNSRTPAYDDSGRTPGYESMPSRTPNYDSSSKTPAY 941

Query: 332 LSSQQKARFPPHLNNQPIFHKPFARPTA 415
S+ AR P + N+ I P P A
Sbjct: 942 PESEHSARTPAYNNDYDIPLSPAYEPDA 969


>sp|A5DM91|KYNU_PICGU Kynureninase OS=Pichia guilliermondii GN=BNA5
PE=3 SV=2
Length = 445

Score = 32.0 bits (71), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1

Query: 138 DHWICLSQDLAHLVSNLKLSVCTWACPLLVFLS 40
DH IC+ DLAH V N+ L++ W V+ S
Sbjct: 208 DHGICVGWDLAHAVGNVPLNLHDWNVDFAVWCS 240


>sp|Q17QH9|IQCD_BOVIN IQ domain-containing protein D OS=Bos taurus
GN=IQCD PE=2 SV=1
Length = 444

Score = 31.2 bits (69), Expect = 3.8
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +2

Query: 137 SRQVEANGTLTPDLETQIQSHRTPCQSSYDNISC*LYDENSRKVVTKVGFWAQPYWENKS 316
S + G L PD+ ++ H CQ+ D +S E RK+ F + ++ +
Sbjct: 74 SESKTSEGMLGPDIAKAVREHEDLCQALLDRVS--YLQEEERKLQEAEDFEDEAWFRER- 130

Query: 317 GFPVFLSSQQKARFPP 364
+F QK++ PP
Sbjct: 131 ---LFAMDLQKSQLPP 143


>sp|Q6F9N7|UBIC_ACIAD Probable chorismate--pyruvate lyase
OS=Acinetobacter sp. (strain ADP1) GN=ubiC PE=3 SV=1
Length = 167

Score = 30.8 bits (68), Expect = 4.9
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +2

Query: 293 QPYWENKSGFPVFLSSQQKARFPPHLNNQPIFHKPFARPT 412
QP+ + KS FPV LS Q+KAR H+ +PI F R T
Sbjct: 81 QPWVKAKSIFPV-LSLQKKARIFKHIGKKPIGRFLFQRTT 119


>sp|Q66810|VGP_EBOIC Envelope glycoprotein OS=Ivory Coast ebolavirus
(strain Cote d'Ivoire-94) GN=GP PE=1 SV=1
Length = 676

Score = 30.0 bits (66), Expect = 8.4
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2

Query: 266 VVTKVGFWAQPYWENKSGFPVFLSSQQKARFP-PHLNNQ 379
V T +G WA +WENK F LSS++ + P P NQ
Sbjct: 281 VDTSMGEWA--FWENKKNFTKTLSSEELSFVPVPETQNQ 317


tr_hit_id B8LMU5
Definition tr|B8LMU5|B8LMU5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 25
Score (bit) 40.0
E-value 0.09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915793|Adiantum capillus-veneris mRNA, clone:
YMU001_000076_H04.
(570 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LMU5|B8LMU5_PICSI Putative uncharacterized protein OS=Picea... 40 0.090
tr|A9NT18|A9NT18_PICSI Ubiquitin carrier protein OS=Picea sitche... 40 0.090
tr|A9RZ99|A9RZ99_PHYPA Ubiquitin carrier protein OS=Physcomitrel... 38 0.34
tr|A9T424|A9T424_PHYPA Ubiquitin carrier protein OS=Physcomitrel... 38 0.45

>tr|B8LMU5|B8LMU5_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 88

Score = 40.0 bits (92), Expect = 0.090
Identities = 20/25 (80%), Positives = 23/25 (92%), Gaps = 1/25 (4%)
Frame = -3

Query: 568 DSSDEEVSED-YLSSEEELAGHADP 497
+SSDEEVSED Y SS+EE+AGHADP
Sbjct: 64 ESSDEEVSEDEYGSSDEEVAGHADP 88


>tr|A9NT18|A9NT18_PICSI Ubiquitin carrier protein OS=Picea
sitchensis PE=2 SV=1
Length = 183

Score = 40.0 bits (92), Expect = 0.090
Identities = 20/25 (80%), Positives = 23/25 (92%), Gaps = 1/25 (4%)
Frame = -3

Query: 568 DSSDEEVSED-YLSSEEELAGHADP 497
+SSDEEVSED Y SS+EE+AGHADP
Sbjct: 159 ESSDEEVSEDEYGSSDEEVAGHADP 183


>tr|A9RZ99|A9RZ99_PHYPA Ubiquitin carrier protein OS=Physcomitrella
patens subsp. patens GN=PHYPADRAFT_161932 PE=3 SV=1
Length = 183

Score = 38.1 bits (87), Expect = 0.34
Identities = 18/26 (69%), Positives = 23/26 (88%), Gaps = 2/26 (7%)
Frame = -3

Query: 568 DSSDEEVSE--DYLSSEEELAGHADP 497
DSSD+E+SE D +SS+EE+AGHADP
Sbjct: 158 DSSDDELSEEEDCMSSDEEMAGHADP 183


>tr|A9T424|A9T424_PHYPA Ubiquitin carrier protein OS=Physcomitrella
patens subsp. patens GN=PHYPADRAFT_107441 PE=3 SV=1
Length = 159

Score = 37.7 bits (86), Expect = 0.45
Identities = 18/26 (69%), Positives = 23/26 (88%), Gaps = 2/26 (7%)
Frame = -3

Query: 568 DSSDEEVS--EDYLSSEEELAGHADP 497
+SSDEE+S ED +SS+EE+AGHADP
Sbjct: 134 ESSDEELSDEEDCMSSDEEMAGHADP 159