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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915795
Clone id YMU001_000077_A03
Library
Length 460
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000077_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTACAAGTGCCCTGGATGAAGAGAACGAGGCAGCTTTGTATAGGCTTGTTCATGCAGCTG
GTATAACATACATCAGTGTAGGACATAGAAGCAGTCTACGCAAATTTCATTTGTTGCGAC
TAACCATTGGAGAATGTAAGCAGGATGATTGGGCAGAAACTGGAATTTAGAATGCCTGGA
TAAATAGCTTGTGTACATGTAAGTCTATGATCTTTAGAAGAGGTGGATGTAAGTCCCTTT
CTTTGGCCGAAATGCAATCCAAAAAAGGCGCATTGTATAGGCGATATTTTTAAATATCAA
GGATCCAAAGTGTTTGTATAAAAGACTATATGAATCATGGAACCTGAACTTGCTGATAGC
ACAGGAAGCCGATTATTTGTACCATTAATTGTCGCCCATTGAATTGCTTCGAATGTGAAA
GAAGCATGCAATTTTGTATTCCCATTGTATCACATGAAAT
■■Homology search results ■■ -
sp_hit_id O14678
Definition sp|O14678|ABCD4_HUMAN ATP-binding cassette sub-family D member 4 OS=Homo sapiens
Align length 42
Score (bit) 50.1
E-value 5.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915795|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_A03.
         (460 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14678|ABCD4_HUMAN ATP-binding cassette sub-family D member 4...    50   5e-06
sp|O89016|ABCD4_MOUSE ATP-binding cassette sub-family D member 4...    49   1e-05
sp|Q55774|Y182_SYNY3 Uncharacterized ABC transporter ATP-binding...    46   7e-05
sp|P45221|Y1467_HAEIN Uncharacterized ABC transporter ATP-bindin...    38   0.024
sp|P41909|PXA1_YEAST Peroxisomal long-chain fatty acid import pr...    34   0.35 
sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2...    32   1.0  
sp|Q57335|Y036_HAEIN Uncharacterized ABC transporter ATP-binding...    32   1.3  
sp|P34230|PXA2_YEAST Peroxisomal long-chain fatty acid import pr...    32   1.7  
sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 O...    32   1.7  
sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2...    32   1.7  
sp|P48410|ABCD1_MOUSE ATP-binding cassette sub-family D member 1...    31   2.3  
sp|P33897|ABCD1_HUMAN ATP-binding cassette sub-family D member 1...    31   2.3  
sp|P28288|ABCD3_HUMAN ATP-binding cassette sub-family D member 3...    30   5.0  
sp|P16970|ABCD3_RAT ATP-binding cassette sub-family D member 3 O...    29   8.6  

>sp|O14678|ABCD4_HUMAN ATP-binding cassette sub-family D member 4
           OS=Homo sapiens GN=ABCD4 PE=2 SV=1
          Length = 606

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTI 128
           TSAL EE E+ LYR+    G+T+ISVGHR SL KFH L L +
Sbjct: 551 TSALTEEVESELYRIGQQLGMTFISVGHRQSLEKFHSLVLKL 592


>sp|O89016|ABCD4_MOUSE ATP-binding cassette sub-family D member 4
           OS=Mus musculus GN=Abcd4 PE=2 SV=1
          Length = 606

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 26/42 (61%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFH--LLRL 122
           TSAL EE E+ LYR+    G+T+ISVGHR SL KFH  +LRL
Sbjct: 551 TSALTEEAESELYRIGQQLGMTFISVGHRPSLEKFHSWVLRL 592


>sp|Q55774|Y182_SYNY3 Uncharacterized ABC transporter ATP-binding
           protein sll0182 OS=Synechocystis sp. (strain PCC 6803)
           GN=sll0182 PE=3 SV=1
          Length = 661

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 22/36 (61%), Positives = 25/36 (69%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFH 110
           TSALD  NEA LY  +   G T+ISVGHR +LR FH
Sbjct: 607 TSALDVNNEAELYHALTDLGTTFISVGHRPTLRNFH 642


>sp|P45221|Y1467_HAEIN Uncharacterized ABC transporter ATP-binding
           protein HI1467 OS=Haemophilus influenzae GN=HI1467 PE=3
           SV=1
          Length = 589

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +3

Query: 3   TSALDEENEAALYRLV--HAAGITYISVGHRSSLRKFHLLRLTIGEC 137
           TSALDE  E  LY+ +      +  +SVGHRS+L++FH  +L +  C
Sbjct: 538 TSALDETTENLLYQTIKERLPEMIILSVGHRSTLQQFHNKQLKLDVC 584


>sp|P41909|PXA1_YEAST Peroxisomal long-chain fatty acid import
           protein 2 OS=Saccharomyces cerevisiae GN=PXA1 PE=1 SV=2
          Length = 870

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDW 152
           T+A+  + E  L+ L+      +IS+  R +L K+H + L IGE +   W
Sbjct: 776 TNAISVDMEDYLFNLLKRYRFNFISISQRPTLIKYHEMLLEIGENRDGKW 825


>sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2
           OS=Homo sapiens GN=ABCD2 PE=1 SV=1
          Length = 740

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFH 110
           TSA+  + E  +++    AGI+ +S+ HR SL K+H
Sbjct: 636 TSAVSIDVEGKIFQAAKGAGISLLSITHRPSLWKYH 671


>sp|Q57335|Y036_HAEIN Uncharacterized ABC transporter ATP-binding
           protein HI0036 OS=Haemophilus influenzae GN=HI0036 PE=3
           SV=1
          Length = 592

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAA--GITYISVGHRSSLRKFHLLRLTI 128
           T+++DE  E ++Y+L+       T ISVGHRS+L+  H  +L +
Sbjct: 540 TASMDEGLEFSMYQLLQQELPQTTIISVGHRSTLKTLHQQQLIL 583


>sp|P34230|PXA2_YEAST Peroxisomal long-chain fatty acid import
           protein 1 OS=Saccharomyces cerevisiae GN=PXA2 PE=1 SV=1
          Length = 853

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFH 110
           TSA+  E E  +Y      GI+ ISV HR+SL  FH
Sbjct: 679 TSAVAPEMEQRMYENAQNFGISLISVCHRTSLWHFH 714


>sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2
           OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1
          Length = 741

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFH 110
           TSA+  + E  +++    AGI+ +S+ HR SL K+H
Sbjct: 637 TSAVSIDVEGKIFQAAIGAGISLLSITHRPSLWKYH 672


>sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2
           OS=Mus musculus GN=Abcd2 PE=1 SV=1
          Length = 741

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFH 110
           TSA+  + E  +++    AGI+ +S+ HR SL K+H
Sbjct: 637 TSAVSIDVEGKIFQAAIGAGISLLSITHRPSLWKYH 672
tr_hit_id Q9SLJ9
Definition tr|Q9SLJ9|Q9SLJ9_ARATH F20D21.17 protein OS=Arabidopsis thaliana
Align length 51
Score (bit) 56.6
E-value 6.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915795|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_A03.
         (460 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SLJ9|Q9SLJ9_ARATH F20D21.17 protein OS=Arabidopsis thaliana...    57   6e-07
tr|Q6NLC1|Q6NLC1_ARATH At1g54350 OS=Arabidopsis thaliana GN=At1g...    57   6e-07
tr|B8A0C7|B8A0C7_MAIZE Putative uncharacterized protein OS=Zea m...    57   6e-07
tr|A9TFA7|A9TFA7_PHYPA ATP-binding cassette transporter, subfami...    56   1e-06
tr|A9SSI7|A9SSI7_PHYPA ATP-binding cassette transporter, subfami...    56   1e-06
tr|A2Q3K0|A2Q3K0_MEDTR AAA ATPase; ABC transporter, transmembran...    55   1e-06
tr|A7QMN6|A7QMN6_VITVI Chromosome chr19 scaffold_126, whole geno...    54   3e-06
tr|A5BX90|A5BX90_VITVI Putative uncharacterized protein OS=Vitis...    54   3e-06
tr|Q5QNE1|Q5QNE1_ORYSJ Putative ABC transporter Nda (Os01g021870...    54   5e-06
tr|B8AAK9|B8AAK9_ORYSI Putative uncharacterized protein OS=Oryza...    54   5e-06
tr|A2ZQQ6|A2ZQQ6_ORYSJ Putative uncharacterized protein OS=Oryza...    54   5e-06
tr|A8IIQ5|A8IIQ5_CHLRE Predicted protein (Fragment) OS=Chlamydom...    52   1e-05
tr|Q8YTQ0|Q8YTQ0_ANASP ABC transporter ATP-binding protein OS=An...    52   2e-05
tr|B7KI74|B7KI74_9CHRO ABC transporter domain protein OS=Cyanoth...    52   2e-05
tr|B4CVY0|B4CVY0_9BACT ABC transporter domain protein OS=Chthoni...    51   3e-05
tr|Q5E9I5|Q5E9I5_BOVIN ATP-binding cassette, sub-family D, membe...    51   3e-05
tr|Q8YTR3|Q8YTR3_ANASP ABC transporter ATP-binding protein OS=An...    51   3e-05
tr|A8K5L7|A8K5L7_HUMAN cDNA FLJ77136, highly similar to Homo sap...    51   3e-05
tr|A0Z9R8|A0Z9R8_NODSP ABC transporter ATP-binding protein OS=No...    50   7e-05
tr|A0Z9R7|A0Z9R7_NODSP ABC transporter ATP-binding protein OS=No...    50   7e-05
tr|Q87WJ5|Q87WJ5_PSESM ABC transporter, ATP-binding protein OS=P...    49   1e-04
tr|Q0EE50|Q0EE50_PSESF ATP-binding protein of ABC transporter OS...    49   2e-04
tr|B3SDE8|B3SDE8_TRIAD Putative uncharacterized protein (Fragmen...    49   2e-04
tr|Q4C6B9|Q4C6B9_CROWT ABC transporter OS=Crocosphaera watsonii ...    48   2e-04
tr|B1WWU4|B1WWU4_CYAA5 ATP-binding protein of ABC transporter OS...    47   5e-04
tr|Q4C6C0|Q4C6C0_CROWT ABC transporter, transmembrane region:ABC...    47   5e-04
tr|Q4KIB6|Q4KIB6_PSEF5 ABC transporter, ATP-binding protein OS=P...    47   6e-04
tr|B1WWU7|B1WWU7_CYAA5 ATP-binding protein of ABC transporter OS...    46   8e-04
tr|B6N3L8|B6N3L8_BRAFL Putative uncharacterized protein OS=Branc...    46   8e-04
tr|B6L3Y6|B6L3Y6_BRAFL Putative uncharacterized protein OS=Branc...    46   8e-04

>tr|Q9SLJ9|Q9SLJ9_ARATH F20D21.17 protein OS=Arabidopsis thaliana
           GN=F20D21.17 PE=3 SV=1
          Length = 514

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFH--LLRLTIGECKQDD 149
           TSALDE NEA LY+ + +AGITYIS+GHR +L KFH  +L+++  + K ++
Sbjct: 437 TSALDEANEAFLYQQIQSAGITYISIGHRRTLTKFHNKILQISTADPKSNE 487


>tr|Q6NLC1|Q6NLC1_ARATH At1g54350 OS=Arabidopsis thaliana
           GN=At1g54350 PE=2 SV=1
          Length = 706

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFH--LLRLTIGECKQDD 149
           TSALDE NEA LY+ + +AGITYIS+GHR +L KFH  +L+++  + K ++
Sbjct: 629 TSALDEANEAFLYQQIQSAGITYISIGHRRTLTKFHNKILQISTADPKSNE 679


>tr|B8A0C7|B8A0C7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 392

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 28/49 (57%), Positives = 32/49 (65%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDD 149
           TSALDE NEA LY  + AAGITY+S+GHR +L KFH   L I      D
Sbjct: 320 TSALDEANEAHLYSQIEAAGITYVSIGHRKTLHKFHNKALYISMSDSTD 368


>tr|A9TFA7|A9TFA7_PHYPA ATP-binding cassette transporter, subfamily
           D, member 7, group PMP protein PpABCD7 (Fragment)
           OS=Physcomitrella patens subsp. patens GN=ppabcd7 PE=3
           SV=1
          Length = 657

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 26/36 (72%), Positives = 29/36 (80%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFH 110
           TSALDE NE +LY  V  AGIT +SVGHRSSLR+FH
Sbjct: 589 TSALDENNEVSLYTAVQEAGITIVSVGHRSSLRRFH 624


>tr|A9SSI7|A9SSI7_PHYPA ATP-binding cassette transporter, subfamily
           D, member 2, group PMP protein PpABCD2 (Fragment)
           OS=Physcomitrella patens subsp. patens GN=ppabcd2 PE=3
           SV=1
          Length = 658

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQD---DWAETGI*N 173
           TSALDE+NE +LY  V  AGIT +SVGHR++LR+FH + L   E       +W  + I N
Sbjct: 590 TSALDEKNEVSLYAAVQEAGITVVSVGHRNTLRRFHKIILQFEESSGSSGREWTISRIAN 649

Query: 174 A 176
           A
Sbjct: 650 A 650


>tr|A2Q3K0|A2Q3K0_MEDTR AAA ATPase; ABC transporter, transmembrane
           region, type 1 OS=Medicago truncatula
           GN=MtrDRAFT_AC155884g14v2 PE=3 SV=1
          Length = 613

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 31/54 (57%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFH--LLRL--TIGECKQDDW 152
           TSALDE NE  LY  + AAGITYISVGHRS+L  FH  +LR+  T    +Q +W
Sbjct: 547 TSALDEANEVYLYEKIAAAGITYISVGHRSTLSNFHDRILRISTTDSNNEQPNW 600


>tr|A7QMN6|A7QMN6_VITVI Chromosome chr19 scaffold_126, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002136001
           PE=3 SV=1
          Length = 681

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 26/42 (61%), Positives = 32/42 (76%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTI 128
           TSALDE NEA LY+ + AAGITY+S+GHR +L  +H  RL I
Sbjct: 612 TSALDEANEAHLYQQIEAAGITYVSIGHRRTLYGYHNRRLHI 653


>tr|A5BX90|A5BX90_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_004748 PE=4 SV=1
          Length = 1504

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 26/42 (61%), Positives = 32/42 (76%)
 Frame = +3

Query: 3    TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTI 128
            TSALDE NEA LY+ + AAGITY+S+GHR +L  +H  RL I
Sbjct: 1435 TSALDEANEAHLYQQIEAAGITYVSIGHRRTLYGYHNRRLHI 1476


>tr|Q5QNE1|Q5QNE1_ORYSJ Putative ABC transporter Nda (Os01g0218700
           protein) OS=Oryza sativa subsp. japonica GN=P0665D10.28
           PE=3 SV=1
          Length = 771

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 27/49 (55%), Positives = 31/49 (63%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDD 149
           TSALD+ NE  LY  + AAGITYIS+GHR +L KFH   L I      D
Sbjct: 699 TSALDDMNERHLYSQIEAAGITYISIGHRKTLHKFHNKVLYISNSDSTD 747


>tr|B8AAK9|B8AAK9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00916 PE=4 SV=1
          Length = 785

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 27/49 (55%), Positives = 31/49 (63%)
 Frame = +3

Query: 3   TSALDEENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDD 149
           TSALD+ NE  LY  + AAGITYIS+GHR +L KFH   L I      D
Sbjct: 713 TSALDDMNERHLYSQIEAAGITYISIGHRKTLHKFHNKVLYISNSDSTD 761