BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915807|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_B11.
         (593 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05FH9|RPOC_CARRP DNA-directed RNA polymerase subunit beta' O...    31   5.3  
sp|Q49Z00|REX_STAS1 Redox-sensing transcriptional repressor rex ...    30   9.1  

>sp|Q05FH9|RPOC_CARRP DNA-directed RNA polymerase subunit beta'
           OS=Carsonella ruddii (strain PV) GN=rpoC PE=3 SV=1
          Length = 1292

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 475 FVNFNGLVIKKYGYFCLTIFF*GN*NRYQKVCFCHS 368
           F+NF  L  +  G FCL IF        +K CFCH+
Sbjct: 32  FINFKNLKPEPNGLFCLKIFSDFELCCLKKKCFCHN 67


>sp|Q49Z00|REX_STAS1 Redox-sensing transcriptional repressor rex
           OS=Staphylococcus saprophyticus subsp. saprophyticus
           (strain ATCC 15305 / DSM 20229) GN=rex PE=3 SV=1
          Length = 213

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 293 FGRLDPKGAMEHVKRIMNLFKWNLGDNDEV-INTTNMTNLGLAL 165
           FG L  KG   ++  +++ FK  + +NDE+ I    + NLG AL
Sbjct: 57  FGELGKKGYGYNIDSLLHFFKNEISENDEIKIAIVGVGNLGKAL 100

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915807|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_B11.
         (593 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5CG57|Q5CG57_CRYHO Putative uncharacterized protein OS=Crypt...    36   1.4  

>tr|Q5CG57|Q5CG57_CRYHO Putative uncharacterized protein
           OS=Cryptosporidium hominis GN=Chro.10243 PE=4 SV=1
          Length = 934

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = -1

Query: 368 SGPIIKFSIVMLNTKKHYIHVFLVPFGRLDPKGA-----MEHVKRIMNLFKWNLGDNDEV 204
           SG  I+    +L+  KH I + L+    LDP         EH++ I +    N  D +E+
Sbjct: 730 SGVCIRSFKELLDVIKHVIQLILIVAPTLDPGNEDYQPYQEHLEVINSQLTTNQSDRNEL 789

Query: 203 INTTNMTNLGLAL*PLESHRYYSISSR 123
           I  T   N GLA      +  +S+SSR
Sbjct: 790 IKNTEFLNSGLA-----QNNIFSLSSR 811