BP915809
Clone id YMU001_000077_C01
Library
Length 472
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000077_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AATGCTCCCTGTCGTCCGCGATTTCTTGCATATGATGGTCACTAGTTTCTTCAGTCTTGA
CCATCTTTACCATTCAGACCATCTTCCGTCTTACTTTGGCTCGTAAAGTCTGTGTGACAA
TTCTTTGGAGAAGTTTCACAGCTATGATCAGTATCTGAATCCACCAGGCAGGTCACTCTT
CTCCGTGTTCGAGATGAAACCCCTGCCTGTGTATCCTTCTCCATGGGCACTTTGCCCTTC
GCTGGCCCTTGCTTGCTTTTCCGTCTTATCCTCTTTTCAGATCCATCAGGCGATGTTGAC
GGGGATAGTTTCGCCTTCCTCTTCAATCCAACATTCCTTCTTCTTATCCTCCTCCTTTCA
AAGTCCTCAAATGATGATGATGACGATGACAACGGCTCGCCTTTTGTCTTTAGTTCGTCT
TCCATTCCTACATCCACATTGGACTCTTGCTGAGTAGGACATTGGAAATCGC
■■Homology search results ■■ -
sp_hit_id P41848
Definition sp|P41848|SSP1A_CAEEL FACT complex subunit SSRP1-A OS=Caenorhabditis elegans
Align length 77
Score (bit) 32.3
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915809|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_C01.
(472 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P41848|SSP1A_CAEEL FACT complex subunit SSRP1-A OS=Caenorhabd... 32 1.1
sp|Q9RJD5|Y757_STRCO Uncharacterized protein SCO0757 OS=Streptom... 32 1.9
sp|A4R0R0|MSH3_MAGGR DNA mismatch repair protein MSH3 OS=Magnapo... 31 3.1
sp|Q5ZIB2|FBF1_CHICK Fas-binding factor 1 homolog OS=Gallus gall... 31 3.1
sp|Q5DU00|DCDC2_MOUSE Doublecortin domain-containing protein 2 O... 31 3.1
sp|Q2HDJ0|LMBD1_CHAGB Probable lysosomal cobalamin transporter O... 30 4.1
sp|Q9UGU0|TCF20_HUMAN Transcription factor 20 OS=Homo sapiens GN... 30 4.2
sp|P02259|H5_CHICK Histone H5 OS=Gallus gallus PE=1 SV=2 30 5.3
sp|P29374|ARI4A_HUMAN AT-rich interactive domain-containing prot... 30 5.3
sp|Q8G0H4|ISPDF_BRUSU Bifunctional enzyme ispD/ispF OS=Brucella ... 30 5.4
sp|A5VQP4|ISPDF_BRUO2 Bifunctional enzyme ispD/ispF OS=Brucella ... 30 5.4
sp|Q8YHD8|ISPDF_BRUME Bifunctional enzyme ispD/ispF OS=Brucella ... 30 5.4
sp|Q57D18|ISPDF_BRUAB Bifunctional enzyme ispD/ispF OS=Brucella ... 30 5.4
sp|Q2YPW1|ISPDF_BRUA2 Bifunctional enzyme ispD/ispF OS=Brucella ... 30 5.4
sp|Q550L8|IFKB_DICDI Probable serine/threonine-protein kinase if... 30 6.9
sp|Q07851|VE2_HPV65 Regulatory protein E2 OS=Human papillomaviru... 29 9.1
sp|Q9VK33|SMBT_DROME Polycomb protein Sfmbt OS=Drosophila melano... 29 9.1
sp|Q9JIR0|RIMB1_RAT Peripheral-type benzodiazepine receptor-asso... 29 9.1
sp|O95153|RIMB1_HUMAN Peripheral-type benzodiazepine receptor-as... 29 9.1
sp|Q8K310|MATR3_MOUSE Matrin-3 OS=Mus musculus GN=Matr3 PE=1 SV=1 29 9.1
sp|Q5F3R2|JAD1B_CHICK Histone demethylase JARID1B OS=Gallus gall... 29 9.1
sp|P06513|H5_CAIMO Histone H5 OS=Cairina moschata PE=2 SV=2 29 9.1
sp|Q9LPC1|GAE2_ARATH UDP-glucuronate 4-epimerase 2 OS=Arabidopsi... 29 9.1
sp|Q15398|DLGP5_HUMAN Disks large-associated protein 5 OS=Homo s... 29 9.1
sp|P42380|CLPP_CHLRE ATP-dependent Clp protease proteolytic subu... 29 9.1
sp|P08152|EGR2_MOUSE Early growth response protein 2 OS=Mus musc... 29 9.3

>sp|P41848|SSP1A_CAEEL FACT complex subunit SSRP1-A
OS=Caenorhabditis elegans GN=hmg-4 PE=2 SV=1
Length = 697

Score = 32.3 bits (72), Expect = 1.1
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -3

Query: 278 EKRIRRKSKQGP--AKGKVPMEKDTQAGVSSRTRRRVTCLVDSDTDHSCETSPKNCHTDF 105
EK ++ K GP + K K ++ + + ++ SD+D S + PK
Sbjct: 615 EKEMKEYRKNGPPSSSSKPSSSKTSKKSSGPSSSKAISKEYISDSDDSDDEEPKKKEKKA 674

Query: 104 TSQSKTEDGLNGKDGQD 54
+ ++E+ NG DG D
Sbjct: 675 APKEESEESNNGSDGSD 691


>sp|Q9RJD5|Y757_STRCO Uncharacterized protein SCO0757
OS=Streptomyces coelicolor GN=SCO0757 PE=3 SV=1
Length = 336

Score = 31.6 bits (70), Expect = 1.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1

Query: 235 AKCPWRRIHRQGFHLEHGEE*PAWWIQIL 149
A CPW R+G L H E+ PAWW +++
Sbjct: 289 ALCPWAI--REGVLLRHIEDGPAWWAEVV 315


>sp|A4R0R0|MSH3_MAGGR DNA mismatch repair protein MSH3
OS=Magnaporthe grisea GN=MSH3 PE=3 SV=1
Length = 1151

Score = 30.8 bits (68), Expect = 3.1
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = -3

Query: 329 GLKRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTR--RRVTCLV-- 162
GLKR P TS + E+ K P+E+D AG + R R +R +V
Sbjct: 26 GLKRPTSSRPGTSEEDEERTADSSPSSRDNVRKRPLEQDPDAGNTRRPRASKRAKNVVID 85

Query: 161 DSDTDHSCETSPKNCHTDFTSQSKTE 84
D D +H + + D +++ E
Sbjct: 86 DEDDEHDNDDDDDDFKLDAEAEADPE 111


>sp|Q5ZIB2|FBF1_CHICK Fas-binding factor 1 homolog OS=Gallus gallus
GN=FBF1 PE=2 SV=1
Length = 1132

Score = 30.8 bits (68), Expect = 3.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3

Query: 293 SPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDSD 153
SP GSE+R RK++ G K +P + +R R +T D D
Sbjct: 186 SPKGSERRPERKTELGKEKDPLPPQTPLHTTAPARRREELTFEDDDD 232


>sp|Q5DU00|DCDC2_MOUSE Doublecortin domain-containing protein 2
OS=Mus musculus GN=Dcdc2 PE=2 SV=2
Length = 475

Score = 30.8 bits (68), Expect = 3.1
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -3

Query: 317 KAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDSDTDHSC 138
K+K S PD E + +++ +G +++D V +R +VD + D
Sbjct: 295 KSKTSHQAIPDNGEGIFKAGAERSETRGAAEVQEDEDTQVEVPVDQRPAEIVDEEEDGEK 354

Query: 137 ETSPKNCHTDFTSQS-KTED 81
+ N DF++ + +TED
Sbjct: 355 TSKDANQKEDFSAMNGETED 374


>sp|Q2HDJ0|LMBD1_CHAGB Probable lysosomal cobalamin transporter
OS=Chaetomium globosum GN=CHGG_01714 PE=3 SV=1
Length = 646

Score = 30.4 bits (67), Expect = 4.1
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3

Query: 302 PSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDSDTD 147
P P + R+RR S GP+ P + + SSRT R +D + +
Sbjct: 503 PQPRPPSNWPRLRRPSTSGPSSSSSPSSSSSSSPASSRTPRLNLSELDEEAE 554


>sp|Q9UGU0|TCF20_HUMAN Transcription factor 20 OS=Homo sapiens
GN=TCF20 PE=1 SV=3
Length = 1960

Score = 30.4 bits (67), Expect = 4.2
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -2

Query: 240 EGQSAHGEGYTGRGFISNTEKSDLPGGFRY 151
EG G G GF S TE S PG RY
Sbjct: 678 EGNGQSGHSAAGPGFTSRTEPSKSPGSLRY 707


>sp|P02259|H5_CHICK Histone H5 OS=Gallus gallus PE=1 SV=2
Length = 190

Score = 30.0 bits (66), Expect = 5.3
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -3

Query: 320 RKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRR 180
RKA+ SP+ P + ++ R+KS+ P K K P ++ +S+ ++
Sbjct: 126 RKAR-SPAKKPKATARKARKKSRASPKKAKKPKTVKAKSRKASKAKK 171


>sp|P29374|ARI4A_HUMAN AT-rich interactive domain-containing protein
4A OS=Homo sapiens GN=ARID4A PE=1 SV=3
Length = 1257

Score = 30.0 bits (66), Expect = 5.3
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = -3

Query: 323 KRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTR---RRVTCLVDSD 153
K+KAK + D R+KSK+G K + + G+S + +C DS+
Sbjct: 642 KKKAKNKEDSEKDEKRDEERQKSKRGRPPLKSTLSSNMPYGLSKTANSEGKSDSCSSDSE 701

Query: 152 TDHSCETSPKNCHTDFTSQSKTEDGLN 72
T+ + E + N + + + LN
Sbjct: 702 TEDALEKNLINEELSLKDELEKNENLN 728


>sp|Q8G0H4|ISPDF_BRUSU Bifunctional enzyme ispD/ispF OS=Brucella
suis GN=ispDF PE=3 SV=2
Length = 390

Score = 30.0 bits (66), Expect = 5.4
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +1

Query: 157 ESTRQVTLLRVRDETPACVSFSMGTLPFAGPCLLFRLILFSDPSGDV 297
ESTR + LL ++DE P V G PF G LL R+I P V
Sbjct: 78 ESTR-LGLLALKDEAPQYVLIHDGVRPFIGQDLLERIIANLTPDNGV 123


tr_hit_id B6NLF9
Definition tr|B6NLF9|B6NLF9_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 81
Score (bit) 36.6
E-value 0.65
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915809|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_C01.
(472 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6NLF9|B6NLF9_BRAFL Putative uncharacterized protein OS=Branc... 37 0.65
tr|A5E7E2|A5E7E2_LODEL Putative uncharacterized protein OS=Lodde... 36 1.1
tr|Q5GAK9|Q5GAK9_9VIRU Neurofilament triplet H1 protein OS=Group... 35 1.4
tr|B4NJX8|B4NJX8_DROWI GK13393 OS=Drosophila willistoni GN=GK133... 35 1.4
tr|A3W0R4|A3W0R4_9RHOB Voltage-gated sodium channel OS=Roseovari... 35 2.4
tr|B6PZM8|B6PZM8_BRAFL Putative uncharacterized protein (Fragmen... 35 2.5
tr|A2ENW6|A2ENW6_TRIVA MOZ/SAS family protein OS=Trichomonas vag... 34 4.2
tr|A9TTW5|A9TTW5_PHYPA Predicted protein OS=Physcomitrella paten... 34 4.2
tr|Q19452|Q19452_CAEEL Protein F14D7.2, partially confirmed by t... 33 5.5
tr|B4I5G7|B4I5G7_DROSE GM17089 OS=Drosophila sechellia GN=GM1708... 33 5.5
tr|A7UTY6|A7UTY6_ANOGA AGAP005940-PA OS=Anopheles gambiae GN=AGA... 33 5.5
tr|A8N9E7|A8N9E7_COPC7 Predicted protein OS=Coprinopsis cinerea ... 33 5.5
tr|A2G690|A2G690_TRIVA MOZ/SAS family protein OS=Trichomonas vag... 33 7.1
tr|A4HFN4|A4HFN4_LEIBR Putative uncharacterized protein OS=Leish... 33 7.1
tr|Q7XTZ4|Q7XTZ4_ORYSJ OSJNBa0019K04.3 protein OS=Oryza sativa s... 33 9.3
tr|Q01JX1|Q01JX1_ORYSA OSIGBa0147H17.2 protein OS=Oryza sativa G... 33 9.3
tr|A2XWL7|A2XWL7_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.3
tr|B4JTL6|B4JTL6_DROGR GH17447 OS=Drosophila grimshawi GN=GH1744... 33 9.3
tr|A7RF40|A7RF40_NEMVE Predicted protein OS=Nematostella vectens... 33 9.3

>tr|B6NLF9|B6NLF9_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_127996 PE=4 SV=1
Length = 2341

Score = 36.6 bits (83), Expect = 0.65
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = -3

Query: 323 KRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPM-EKDTQAGVSSRTRRRVTCLVDSDTD 147
K K SPS+S + EK+ R+ + G KG + ++ SRTR R S++
Sbjct: 548 KEKKHESPSSSREPREKKRDRERRSGSRKGSSSKDDSKSERHERSRTRSR------SESC 601

Query: 146 HSCETSPKNCHTDFTSQSKTE 84
S +TSP N H+ +SKT+
Sbjct: 602 SSSKTSPHNDHSRNREKSKTK 622


>tr|A5E7E2|A5E7E2_LODEL Putative uncharacterized protein
OS=Lodderomyces elongisporus GN=LELG_05531 PE=4 SV=1
Length = 541

Score = 35.8 bits (81), Expect = 1.1
Identities = 25/70 (35%), Positives = 36/70 (51%)
Frame = +2

Query: 71 HSDHLPSYFGS*SLCDNSLEKFHSYDQYLNPPGRSLFSVFEMKPLPVYPSPWALCPSLAL 250
H+ P+Y S S C+ S++K S+ Q +NPPG +L +KP+ V P LC L
Sbjct: 240 HNKSYPTYEESLSECEESMQKIISHCQMVNPPGETL-----VKPI-VTPRFAPLCSKEML 293

Query: 251 ACFSVLSSFQ 280
LS+ Q
Sbjct: 294 RYLGRLSNEQ 303


>tr|Q5GAK9|Q5GAK9_9VIRU Neurofilament triplet H1 protein OS=Grouper
iridovirus GN=GIV07 PE=4 SV=1
Length = 178

Score = 35.4 bits (80), Expect = 1.4
Identities = 23/86 (26%), Positives = 34/86 (39%)
Frame = -3

Query: 323 KRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDSDTDH 144
K A+ TS +R S++ PA+ K P + + A S T R+ S T
Sbjct: 77 KSPARRKSPTSRKSPARRKSPTSRKSPARRKSPTSRKSPARRKSPTSRKSPARGRSPTRR 136

Query: 143 SCETSPKNCHTDFTSQSKTEDGLNGK 66
T+P C T + S K+ K
Sbjct: 137 KTPTTPSKCPTSYPSSMKSGSSRRSK 162


>tr|B4NJX8|B4NJX8_DROWI GK13393 OS=Drosophila willistoni GN=GK13393
PE=4 SV=1
Length = 673

Score = 35.4 bits (80), Expect = 1.4
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = -3

Query: 323 KRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDSDTDH 144
K KAK S + G + K+KQG K +P EKD QA + ++++ +DTD+
Sbjct: 416 KTKAK---SKNKQGETETDENKNKQGKGKKTLPDEKDAQAS-AGKSKKDGEKGEKTDTDN 471

Query: 143 SCET-SPKNCHTDFTSQSKTEDGLNGKDGQD 54
T S K D T + K + G G++ D
Sbjct: 472 KVATDSGKGKKPDETDKGKKQKGGAGQNKSD 502


>tr|A3W0R4|A3W0R4_9RHOB Voltage-gated sodium channel OS=Roseovarius
sp. 217 GN=ROS217_05514 PE=4 SV=1
Length = 306

Score = 34.7 bits (78), Expect = 2.4
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 13/60 (21%)
Frame = +2

Query: 137 HSYDQYLNPPGRSLFSVFEMKPL------------PVYPSPWA-LCPSLALACFSVLSSF 277
+S+D++ GRSL+S+F++ L VYP WA P + + FSVL+ F
Sbjct: 187 NSFDEWFGTLGRSLYSLFQIMTLESWSMGIVRPVMEVYPMAWAFFVPFIVITAFSVLNLF 246


>tr|B6PZM8|B6PZM8_BRAFL Putative uncharacterized protein (Fragment)
OS=Branchiostoma floridae GN=BRAFLDRAFT_112899 PE=4 SV=1
Length = 214

Score = 34.7 bits (78), Expect = 2.5
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -3

Query: 323 KRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVT 171
KRK K S S+S +G+ +++RK K P K + +++GVS R R T
Sbjct: 89 KRKRKRSSSSSDEGNTTKLKRKQKSSP---KRKSDSGSESGVSRRNSRSST 136


>tr|A2ENW6|A2ENW6_TRIVA MOZ/SAS family protein OS=Trichomonas
vaginalis G3 GN=TVAG_216320 PE=4 SV=1
Length = 387

Score = 33.9 bits (76), Expect = 4.2
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +2

Query: 47 FFSLDHLYHSDHLPSYFGS*SLCDNSLEKFHSYDQYLNPPGRSLF-----SVFEMK 199
F+ +DH+Y +H SYF S L+ + L PPGR ++ SVFE+K
Sbjct: 134 FYKMDHIYICEHCFSYFKS----PEDLQAHIDEKKELCPPGREIYREGNLSVFELK 185


>tr|A9TTW5|A9TTW5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_171926 PE=4 SV=1
Length = 455

Score = 33.9 bits (76), Expect = 4.2
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -3

Query: 323 KRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDSDTD 147
+ + KL PS+ D S K+ RR+ + AKG +A R R VTC+ ++ +
Sbjct: 28 RAEVKLRPSSIRDSSRKKARREVTETDAKGAQDTSICREASSRDRPSRNVTCIGSTEKE 86


>tr|Q19452|Q19452_CAEEL Protein F14D7.2, partially confirmed by
transcript evidence OS=Caenorhabditis elegans GN=F14D7.2
PE=2 SV=1
Length = 457

Score = 33.5 bits (75), Expect = 5.5
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = -3

Query: 266 RRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDSDTDHSCETSPKNCHTDFTSQSKT 87
RR+ P G+V D Q+G SS TR D D S + + K + S +
Sbjct: 229 RRRPDSDPPGGRVTSPSDVQSGASSHTRES-----DETPDISADGAKKLDNITEESGTPE 283

Query: 86 EDGLNGKDGQD 54
E+ ++G+D +D
Sbjct: 284 EELMSGRDSED 294


>tr|B4I5G7|B4I5G7_DROSE GM17089 OS=Drosophila sechellia GN=GM17089
PE=4 SV=1
Length = 1325

Score = 33.5 bits (75), Expect = 5.5
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = -3

Query: 335 NVGLKRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDS 156
N G +R+ + S EK +RKSK+ AK K +K+ + +++RR S
Sbjct: 1010 NAGKEREKERKRSEQEQEKEKEKQRKSKKEKAKDK-KRKKEEKKAAKKKSKRRRKSQESS 1068

Query: 155 DTDHSCETSPKNCHTDFTSQSKTED 81
++ S ++ + +S S +ED
Sbjct: 1069 ESSGSEDSDKSTSESSDSSNSSSED 1093