BP915809 |
Clone id |
YMU001_000077_C01 |
Library |
YMU01 |
Length |
472 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000077_C01. |
Accession |
BP915809 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1538Contig1 |
Sequence |
AATGCTCCCTGTCGTCCGCGATTTCTTGCATATGATGGTCACTAGTTTCTTCAGTCTTGA CCATCTTTACCATTCAGACCATCTTCCGTCTTACTTTGGCTCGTAAAGTCTGTGTGACAA TTCTTTGGAGAAGTTTCACAGCTATGATCAGTATCTGAATCCACCAGGCAGGTCACTCTT CTCCGTGTTCGAGATGAAACCCCTGCCTGTGTATCCTTCTCCATGGGCACTTTGCCCTTC GCTGGCCCTTGCTTGCTTTTCCGTCTTATCCTCTTTTCAGATCCATCAGGCGATGTTGAC GGGGATAGTTTCGCCTTCCTCTTCAATCCAACATTCCTTCTTCTTATCCTCCTCCTTTCA AAGTCCTCAAATGATGATGATGACGATGACAACGGCTCGCCTTTTGTCTTTAGTTCGTCT TCCATTCCTACATCCACATTGGACTCTTGCTGAGTAGGACATTGGAAATCGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P41848 |
Definition |
sp|P41848|SSP1A_CAEEL FACT complex subunit SSRP1-A OS=Caenorhabditis elegans |
Align length |
77 |
Score (bit) |
32.3 |
E-value |
1.1 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6NLF9 |
Definition |
tr|B6NLF9|B6NLF9_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae |
Align length |
81 |
Score (bit) |
36.6 |
E-value |
0.65 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915809|Adiantum capillus-veneris mRNA, clone: YMU001_000077_C01. (472 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B6NLF9|B6NLF9_BRAFL Putative uncharacterized protein OS=Branc... 37 0.65 tr|A5E7E2|A5E7E2_LODEL Putative uncharacterized protein OS=Lodde... 36 1.1 tr|Q5GAK9|Q5GAK9_9VIRU Neurofilament triplet H1 protein OS=Group... 35 1.4 tr|B4NJX8|B4NJX8_DROWI GK13393 OS=Drosophila willistoni GN=GK133... 35 1.4 tr|A3W0R4|A3W0R4_9RHOB Voltage-gated sodium channel OS=Roseovari... 35 2.4 tr|B6PZM8|B6PZM8_BRAFL Putative uncharacterized protein (Fragmen... 35 2.5 tr|A2ENW6|A2ENW6_TRIVA MOZ/SAS family protein OS=Trichomonas vag... 34 4.2 tr|A9TTW5|A9TTW5_PHYPA Predicted protein OS=Physcomitrella paten... 34 4.2 tr|Q19452|Q19452_CAEEL Protein F14D7.2, partially confirmed by t... 33 5.5 tr|B4I5G7|B4I5G7_DROSE GM17089 OS=Drosophila sechellia GN=GM1708... 33 5.5 tr|A7UTY6|A7UTY6_ANOGA AGAP005940-PA OS=Anopheles gambiae GN=AGA... 33 5.5 tr|A8N9E7|A8N9E7_COPC7 Predicted protein OS=Coprinopsis cinerea ... 33 5.5 tr|A2G690|A2G690_TRIVA MOZ/SAS family protein OS=Trichomonas vag... 33 7.1 tr|A4HFN4|A4HFN4_LEIBR Putative uncharacterized protein OS=Leish... 33 7.1 tr|Q7XTZ4|Q7XTZ4_ORYSJ OSJNBa0019K04.3 protein OS=Oryza sativa s... 33 9.3 tr|Q01JX1|Q01JX1_ORYSA OSIGBa0147H17.2 protein OS=Oryza sativa G... 33 9.3 tr|A2XWL7|A2XWL7_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.3 tr|B4JTL6|B4JTL6_DROGR GH17447 OS=Drosophila grimshawi GN=GH1744... 33 9.3 tr|A7RF40|A7RF40_NEMVE Predicted protein OS=Nematostella vectens... 33 9.3
>tr|B6NLF9|B6NLF9_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_127996 PE=4 SV=1 Length = 2341
Score = 36.6 bits (83), Expect = 0.65 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Frame = -3
Query: 323 KRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPM-EKDTQAGVSSRTRRRVTCLVDSDTD 147 K K SPS+S + EK+ R+ + G KG + ++ SRTR R S++ Sbjct: 548 KEKKHESPSSSREPREKKRDRERRSGSRKGSSSKDDSKSERHERSRTRSR------SESC 601
Query: 146 HSCETSPKNCHTDFTSQSKTE 84 S +TSP N H+ +SKT+ Sbjct: 602 SSSKTSPHNDHSRNREKSKTK 622
>tr|A5E7E2|A5E7E2_LODEL Putative uncharacterized protein OS=Lodderomyces elongisporus GN=LELG_05531 PE=4 SV=1 Length = 541
Score = 35.8 bits (81), Expect = 1.1 Identities = 25/70 (35%), Positives = 36/70 (51%) Frame = +2
Query: 71 HSDHLPSYFGS*SLCDNSLEKFHSYDQYLNPPGRSLFSVFEMKPLPVYPSPWALCPSLAL 250 H+ P+Y S S C+ S++K S+ Q +NPPG +L +KP+ V P LC L Sbjct: 240 HNKSYPTYEESLSECEESMQKIISHCQMVNPPGETL-----VKPI-VTPRFAPLCSKEML 293
Query: 251 ACFSVLSSFQ 280 LS+ Q Sbjct: 294 RYLGRLSNEQ 303
>tr|Q5GAK9|Q5GAK9_9VIRU Neurofilament triplet H1 protein OS=Grouper iridovirus GN=GIV07 PE=4 SV=1 Length = 178
Score = 35.4 bits (80), Expect = 1.4 Identities = 23/86 (26%), Positives = 34/86 (39%) Frame = -3
Query: 323 KRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDSDTDH 144 K A+ TS +R S++ PA+ K P + + A S T R+ S T Sbjct: 77 KSPARRKSPTSRKSPARRKSPTSRKSPARRKSPTSRKSPARRKSPTSRKSPARGRSPTRR 136
Query: 143 SCETSPKNCHTDFTSQSKTEDGLNGK 66 T+P C T + S K+ K Sbjct: 137 KTPTTPSKCPTSYPSSMKSGSSRRSK 162
>tr|B4NJX8|B4NJX8_DROWI GK13393 OS=Drosophila willistoni GN=GK13393 PE=4 SV=1 Length = 673
Score = 35.4 bits (80), Expect = 1.4 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Frame = -3
Query: 323 KRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDSDTDH 144 K KAK S + G + K+KQG K +P EKD QA + ++++ +DTD+ Sbjct: 416 KTKAK---SKNKQGETETDENKNKQGKGKKTLPDEKDAQAS-AGKSKKDGEKGEKTDTDN 471
Query: 143 SCET-SPKNCHTDFTSQSKTEDGLNGKDGQD 54 T S K D T + K + G G++ D Sbjct: 472 KVATDSGKGKKPDETDKGKKQKGGAGQNKSD 502
>tr|A3W0R4|A3W0R4_9RHOB Voltage-gated sodium channel OS=Roseovarius sp. 217 GN=ROS217_05514 PE=4 SV=1 Length = 306
Score = 34.7 bits (78), Expect = 2.4 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 13/60 (21%) Frame = +2
Query: 137 HSYDQYLNPPGRSLFSVFEMKPL------------PVYPSPWA-LCPSLALACFSVLSSF 277 +S+D++ GRSL+S+F++ L VYP WA P + + FSVL+ F Sbjct: 187 NSFDEWFGTLGRSLYSLFQIMTLESWSMGIVRPVMEVYPMAWAFFVPFIVITAFSVLNLF 246
>tr|B6PZM8|B6PZM8_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_112899 PE=4 SV=1 Length = 214
Score = 34.7 bits (78), Expect = 2.5 Identities = 19/51 (37%), Positives = 29/51 (56%) Frame = -3
Query: 323 KRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVT 171 KRK K S S+S +G+ +++RK K P K + +++GVS R R T Sbjct: 89 KRKRKRSSSSSDEGNTTKLKRKQKSSP---KRKSDSGSESGVSRRNSRSST 136
>tr|A2ENW6|A2ENW6_TRIVA MOZ/SAS family protein OS=Trichomonas vaginalis G3 GN=TVAG_216320 PE=4 SV=1 Length = 387
Score = 33.9 bits (76), Expect = 4.2 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Frame = +2
Query: 47 FFSLDHLYHSDHLPSYFGS*SLCDNSLEKFHSYDQYLNPPGRSLF-----SVFEMK 199 F+ +DH+Y +H SYF S L+ + L PPGR ++ SVFE+K Sbjct: 134 FYKMDHIYICEHCFSYFKS----PEDLQAHIDEKKELCPPGREIYREGNLSVFELK 185
>tr|A9TTW5|A9TTW5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_171926 PE=4 SV=1 Length = 455
Score = 33.9 bits (76), Expect = 4.2 Identities = 18/59 (30%), Positives = 29/59 (49%) Frame = -3
Query: 323 KRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDSDTD 147 + + KL PS+ D S K+ RR+ + AKG +A R R VTC+ ++ + Sbjct: 28 RAEVKLRPSSIRDSSRKKARREVTETDAKGAQDTSICREASSRDRPSRNVTCIGSTEKE 86
>tr|Q19452|Q19452_CAEEL Protein F14D7.2, partially confirmed by transcript evidence OS=Caenorhabditis elegans GN=F14D7.2 PE=2 SV=1 Length = 457
Score = 33.5 bits (75), Expect = 5.5 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = -3
Query: 266 RRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDSDTDHSCETSPKNCHTDFTSQSKT 87 RR+ P G+V D Q+G SS TR D D S + + K + S + Sbjct: 229 RRRPDSDPPGGRVTSPSDVQSGASSHTRES-----DETPDISADGAKKLDNITEESGTPE 283
Query: 86 EDGLNGKDGQD 54 E+ ++G+D +D Sbjct: 284 EELMSGRDSED 294
>tr|B4I5G7|B4I5G7_DROSE GM17089 OS=Drosophila sechellia GN=GM17089 PE=4 SV=1 Length = 1325
Score = 33.5 bits (75), Expect = 5.5 Identities = 22/85 (25%), Positives = 40/85 (47%) Frame = -3
Query: 335 NVGLKRKAKLSPSTSPDGSEKRIRRKSKQGPAKGKVPMEKDTQAGVSSRTRRRVTCLVDS 156 N G +R+ + S EK +RKSK+ AK K +K+ + +++RR S Sbjct: 1010 NAGKEREKERKRSEQEQEKEKEKQRKSKKEKAKDK-KRKKEEKKAAKKKSKRRRKSQESS 1068
Query: 155 DTDHSCETSPKNCHTDFTSQSKTED 81 ++ S ++ + +S S +ED Sbjct: 1069 ESSGSEDSDKSTSESSDSSNSSSED 1093
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