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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915816
Clone id YMU001_000077_C12
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000077_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGAAGGTAGTCAGTCAACTGAATCTCAACCTCCTTGGCTTCTTTANCACTCATACGATA
AGGTGGTTTACTCATCGGTTTAGTGCCTGGCAAGACATCTATGCCATGCTGCACATCACG
TGTATGGGGTAAACGTGGTGGTAAATCACTTGAGAACACATCACTATACTCTATGAGTAA
GTGAGTTAGCTTTTGCCGTGCAAAAGGAGAAAGTAAAGTAGAGTTATGTTGGGATGGAGA
ACCTTGTAATTCCTGTACAATGTTTCTTTTCAACATGTACAGTTGCACGTTGCTCTATAG
AGTTAAAAGTGAGAGCACTTTTCTTGTTAGATTTGTTAACACTTTGTTTATCAGTAGAAT
TCATTGCACTTTGCATACCATTACTAGAATTCACCGCACTTCGCTCTTGAGAATTCACAA
GACTTGGAGACAAGCAGTAACACAAAAATACTTCATCTATTAAATCTGCTTCCTGCAAAA
TAGAAGGCTTGGT
■■Homology search results ■■ -
sp_hit_id Q7LHG5
Definition sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae
Align length 50
Score (bit) 33.9
E-value 0.42
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915816|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_C12.
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa...    34   0.42 
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa...    34   0.42 
sp|Q9IAT6|DLLC_DANRE Delta-like protein C OS=Danio rerio GN=dlc ...    33   0.93 
sp|Q1XDU8|YCF46_PORYE Uncharacterized AAA domain-containing prot...    32   1.2  
sp|Q54B64|Y2175_DICDI Putative uncharacterized protein DDB_G0293...    32   2.1  
sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3...    31   2.7  
sp|Q13936|CAC1C_HUMAN Voltage-dependent L-type calcium channel s...    31   2.7  
sp|P22002|CAC1C_RAT Voltage-dependent L-type calcium channel sub...    31   3.5  
sp|Q01815|CAC1C_MOUSE Voltage-dependent L-type calcium channel s...    31   3.5  
sp|Q8H125|SCL5_ARATH Scarecrow-like protein 5 OS=Arabidopsis tha...    30   4.6  
sp|P30072|YCF2_EPIVI Protein ycf2 OS=Epifagus virginiana GN=ycf2...    30   6.0  
sp|Q6BLM3|RAD18_DEBHA Postreplication repair E3 ubiquitin-protei...    30   6.0  
sp|A7Y3K7|NU5C_IPOPU NAD(P)H-quinone oxidoreductase subunit 5, c...    30   6.0  
sp|Q6DD21|CBPC1_XENLA Cytosolic carboxypeptidase 1 OS=Xenopus la...    30   6.0  
sp|P50078|TOS2_YEAST Protein TOS2 OS=Saccharomyces cerevisiae GN...    30   7.9  
sp|Q26600|SMOX1_SCHMA Homeobox protein SMOX-1 (Fragment) OS=Schi...    30   7.9  
sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapien...    30   7.9  

>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein
           OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2
          Length = 1498

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 171 EYSDVFSSDLPPRLPHTRD--VQHGIDVLPGTKPMSKPPYRMSXKEAKEV 28
           +Y ++  +DLPPR     +  V+H I++ PG +     PY ++ K  +E+
Sbjct: 589 KYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEI 638


>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein
           OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3
          Length = 1547

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 171 EYSDVFSSDLPPRLPHTRD--VQHGIDVLPGTKPMSKPPYRMSXKEAKEV 28
           +Y ++  +DLPPR     +  V+H I++ PG +     PY ++ K  +E+
Sbjct: 563 KYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEI 612


>sp|Q9IAT6|DLLC_DANRE Delta-like protein C OS=Danio rerio GN=dlc
           PE=2 SV=1
          Length = 664

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 128 GKRGGKSLENTSLYSMSK*VSFCRAKGESKVELCWDGEPCNSCT 259
           G +G    E   L   S+   +C A GE K  + W+G  C+ CT
Sbjct: 192 GWKGDYCTEPICLSGCSEENGYCEAPGECKCRIGWEGPLCDECT 235


>sp|Q1XDU8|YCF46_PORYE Uncharacterized AAA domain-containing protein
           ycf46 OS=Porphyra yezoensis GN=ycf46 PE=3 SV=1
          Length = 492

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
 Frame = -2

Query: 414 ILKSEVR*ILVMVCKVQ*ILLINKVLTNLTRKVLSLLTL*SNV--QLYMLKRNIVQELQG 241
           I+K++ + I+++ CK+     +N ++T +   + SLL +   +      L  N+  EL  
Sbjct: 109 IIKTQSKHIIIISCKINIPFALNDIITVIDLPLPSLLEIKKEIIRLSKALNLNLNSELVN 168

Query: 240 SPSQHNSTLLSPFARQKLTHLLIEYSDVFSSDLPPRLPHTRDV---QHGIDVLPGTK 79
           + ++    L     R+ +T ++ +Y+ + S  LP  +   R +    H ++  P +K
Sbjct: 169 NITKSCQGLSIDRIRKVITKIIAQYNQIDSRSLPIIIEEKRQIINQTHLLEFYPYSK 225


>sp|Q54B64|Y2175_DICDI Putative uncharacterized protein DDB_G0293878
            OS=Dictyostelium discoideum GN=DDB_G0293878 PE=4 SV=1
          Length = 1441

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 418  VNSQERSAVNSSNGMQSAMNSTDKQSVNKSNKKSALTFNSIEQRATVHVE 269
            VNS  +S  NS N   +  N  +  + N++N KS +  N  E+R  +H++
Sbjct: 1156 VNSNNKSLKNSFNNNNNE-NINNNNNENENNNKSVIYKNQQEERPIIHID 1204


>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3
           OS=Homo sapiens GN=HERC3 PE=1 SV=1
          Length = 1050

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +2

Query: 212 SKVELCWDGEPCNSCTMFLFNMYSCTLLYRVKSESTFLVRFVNTLFISRIHCTLHTITRI 391
           SKV   W  + C    M L N+Y   +LY ++   TFL   +  LF + I   L  + ++
Sbjct: 541 SKVLDNWWSQVCPKYFMKLVNLYKGAVLYLLRGRKTFL---IPVLFNNYITAALKLLEKL 597

Query: 392 HRTSL 406
           ++ +L
Sbjct: 598 YKVNL 602


>sp|Q13936|CAC1C_HUMAN Voltage-dependent L-type calcium channel
            subunit alpha-1C OS=Homo sapiens GN=CACNA1C PE=1 SV=3
          Length = 2221

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = -1

Query: 436  CLSPSLVNSQERSAVNSSNGMQSAMNSTDKQSVNKSNKKSALTFNSIEQRATVHVE 269
            C  PSL++++  S  +  N  Q  +   DK+ + +S K+  L   S+ +RA+ H+E
Sbjct: 1931 CSEPSLLSTEMLSYQDDEN-RQLTLPEEDKRDIRQSPKRGFLRSASLGRRASFHLE 1985


>sp|P22002|CAC1C_RAT Voltage-dependent L-type calcium channel subunit
            alpha-1C OS=Rattus norvegicus GN=Cacna1c PE=1 SV=1
          Length = 2169

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -1

Query: 439  YCLSPSLVNSQERSAVNSSNGMQSAMNSTDKQSVNKSNKKSALTFNSIEQRATVHVE 269
            YC  PSL+++   S  +  N   + +   DK+ +    K+S L   S+ +RA+ H+E
Sbjct: 1876 YCSEPSLLSTDILSYQDDENRQLTCLEE-DKREIQPCPKRSFLRSASLGRRASFHLE 1931


>sp|Q01815|CAC1C_MOUSE Voltage-dependent L-type calcium channel
            subunit alpha-1C OS=Mus musculus GN=Cacna1c PE=1 SV=1
          Length = 2139

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 439  YCLSPSLVNSQERSAVNSSNGMQSAMNSTDKQSVNKSNKKSALTFNSIEQRATVHVE 269
            YC  PSL+ S +  +       Q      DK+ +  S K+S L   S+ +RA+ H+E
Sbjct: 1846 YCSEPSLL-STDMFSYQEDEHRQLTCPEEDKREIQPSPKRSFLRSASLGRRASFHLE 1901


>sp|Q8H125|SCL5_ARATH Scarecrow-like protein 5 OS=Arabidopsis
           thaliana GN=SCL5 PE=2 SV=1
          Length = 597

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -1

Query: 490 KPSILQEADLIDEVFLCYCLSPSLVNSQERSAVNSSNGMQSAMN-STDKQSVNKSNKKSA 314
           +PS +++ DL  + F  YC   S   ++    +N+ N   S  + S+++  ++++N  + 
Sbjct: 90  QPSSVKQMDLSVQTFDSYCTLESSSGTKSHPCLNNKNNSSSTTSFSSNESPISQANNNNL 149

Query: 313 LTFNS 299
             FN+
Sbjct: 150 SRFNN 154
tr_hit_id Q2PK11
Definition tr|Q2PK11|Q2PK11_9POAL Gag-pol polyprotein (Fragment) OS=Fargesia robusta
Align length 62
Score (bit) 62.4
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915816|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_C12.
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2PK11|Q2PK11_9POAL Gag-pol polyprotein (Fragment) OS=Fargesi...    62   1e-08
tr|Q9SLQ0|Q9SLQ0_ORYSI Gag-pol polyprotein (Fragment) OS=Oryza s...    62   1e-08
tr|A5BKJ7|A5BKJ7_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|Q7XWN9|Q7XWN9_ORYSJ OSJNBa0032B23.3 protein OS=Oryza sativa s...    61   3e-08
tr|Q93WG4|Q93WG4_ORYSA Putative retroelement OS=Oryza sativa GN=...    61   3e-08
tr|Q8L7J3|Q8L7J3_MAIZE Gag-pol polyprotein OS=Zea mays PE=4 SV=1       61   3e-08
tr|Q7XFI5|Q7XFI5_ORYSJ Retrotransposon protein, putative, Ty3-gy...    61   3e-08
tr|Q6UUJ1|Q6UUJ1_ORYSJ Putative gag-pol polyprotein (Putative po...    61   3e-08
tr|Q6UUF6|Q6UUF6_ORYSJ Putative gag-pol polyprotein OS=Oryza sat...    61   3e-08
tr|Q6AU11|Q6AU11_ORYSJ Putative retrotransposon protein, 5'-part...    60   6e-08
tr|Q6ATV9|Q6ATV9_ORYSJ Putative retrotransposon protein (Retrotr...    60   6e-08
tr|Q94I07|Q94I07_ORYSA Putative retroelement OS=Oryza sativa GN=...    60   7e-08
tr|Q7XG23|Q7XG23_ORYSJ Retrotransposon protein, putative, Ty3-gy...    60   7e-08
tr|Q6UUM9|Q6UUM9_ORYSJ Putative gag-pol polyprotein OS=Oryza sat...    60   7e-08
tr|Q53L75|Q53L75_ORYSJ Retrotransposon protein, putative, Ty3-gy...    60   7e-08
tr|Q2QVZ5|Q2QVZ5_ORYSJ Retrotransposon protein, putative, Ty3-gy...    60   7e-08
tr|Q8S671|Q8S671_ORYSJ Putative polyprotein (Retrotransposon pro...    59   1e-07
tr|Q7XRJ2|Q7XRJ2_ORYSJ OSJNBa0042D13.18 protein OS=Oryza sativa ...    59   1e-07
tr|Q7XQZ1|Q7XQZ1_ORYSJ OSJNBb0045P24.14 protein OS=Oryza sativa ...    59   1e-07
tr|Q60DH6|Q60DH6_ORYSJ Putative polyprotein OS=Oryza sativa subs...    59   1e-07
tr|Q5JPW6|Q5JPW6_ORYSA OSJNBa0085C10.25 protein OS=Oryza sativa ...    59   1e-07
tr|Q53J72|Q53J72_ORYSJ Retrotransposon protein, putative, Ty3-gy...    59   1e-07
tr|Q01MW1|Q01MW1_ORYSA H0207B04.5 protein OS=Oryza sativa GN=H02...    59   1e-07
tr|Q01MK0|Q01MK0_ORYSA OSIGBa0093M15.5 protein OS=Oryza sativa G...    59   1e-07
tr|Q01MB8|Q01MB8_ORYSA OSIGBa0114I04.4 protein OS=Oryza sativa G...    59   1e-07
tr|Q9AYB5|Q9AYB5_ORYSA Similar to Transposon MAGGYgagandpolgeneh...    59   1e-07
tr|Q8S5K3|Q8S5K3_ORYSJ Putative retroelement OS=Oryza sativa sub...    59   1e-07
tr|Q8LNK3|Q8LNK3_ORYSJ Putative retroelement (Retrotransposon pr...    59   1e-07
tr|Q8LNB2|Q8LNB2_ORYSJ Putative retroelement OS=Oryza sativa sub...    59   1e-07
tr|Q7XRT3|Q7XRT3_ORYSJ OSJNBa0042F21.10 protein OS=Oryza sativa ...    59   1e-07

>tr|Q2PK11|Q2PK11_9POAL Gag-pol polyprotein (Fragment) OS=Fargesia
           robusta PE=4 SV=1
          Length = 222

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 27/62 (43%), Positives = 42/62 (67%)
 Frame = -2

Query: 189 LTHLLIEYSDVFSSDLPPRLPHTRDVQHGIDVLPGTKPMSKPPYRMSXKEAKEVEIQLTD 10
           +T+LL EY DVF  D+PP LP  R ++H ID++PG    ++ PYR + +E KE++ Q+ +
Sbjct: 131 VTNLLQEYMDVFPKDVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQE 190

Query: 9   YL 4
            L
Sbjct: 191 LL 192


>tr|Q9SLQ0|Q9SLQ0_ORYSI Gag-pol polyprotein (Fragment) OS=Oryza
           sativa subsp. indica GN=gag-pol PE=4 SV=1
          Length = 1587

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 26/65 (40%), Positives = 44/65 (67%)
 Frame = -2

Query: 198 RQKLTHLLIEYSDVFSSDLPPRLPHTRDVQHGIDVLPGTKPMSKPPYRMSXKEAKEVEIQ 19
           R  +T+LL EY+D+F  ++PP LP  R ++H ID++PG    ++ PYR + +E KE++ Q
Sbjct: 706 RPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQ 765

Query: 18  LTDYL 4
           + + L
Sbjct: 766 VQELL 770


>tr|A5BKJ7|A5BKJ7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018924 PE=4 SV=1
          Length = 548

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 31/56 (55%), Positives = 40/56 (71%)
 Frame = -2

Query: 171 EYSDVFSSDLPPRLPHTRDVQHGIDVLPGTKPMSKPPYRMSXKEAKEVEIQLTDYL 4
           EY DVF  DLP  LP  R+V+  ID++PGT PMSK PYRM+  E KE+++QL + L
Sbjct: 493 EYPDVFPEDLPG-LPPEREVEFTIDLVPGTGPMSKAPYRMAPVELKELKVQLQELL 547


>tr|Q7XWN9|Q7XWN9_ORYSJ OSJNBa0032B23.3 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0032B23.3 PE=4 SV=1
          Length = 1170

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 25/62 (40%), Positives = 43/62 (69%)
 Frame = -2

Query: 189 LTHLLIEYSDVFSSDLPPRLPHTRDVQHGIDVLPGTKPMSKPPYRMSXKEAKEVEIQLTD 10
           +T+LL EY+D+F  ++PP LP  R ++H ID++PG    ++ PYR + +E KE++ Q+ +
Sbjct: 342 VTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQMQE 401

Query: 9   YL 4
            L
Sbjct: 402 LL 403


>tr|Q93WG4|Q93WG4_ORYSA Putative retroelement OS=Oryza sativa
           GN=OSJNBa0045C13.1 PE=4 SV=1
          Length = 1708

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 25/62 (40%), Positives = 43/62 (69%)
 Frame = -2

Query: 189 LTHLLIEYSDVFSSDLPPRLPHTRDVQHGIDVLPGTKPMSKPPYRMSXKEAKEVEIQLTD 10
           +T+LL EY+D+F  ++PP LP  R ++H ID++PG    ++ PYR + +E KE++ Q+ +
Sbjct: 709 VTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQE 768

Query: 9   YL 4
            L
Sbjct: 769 LL 770


>tr|Q8L7J3|Q8L7J3_MAIZE Gag-pol polyprotein OS=Zea mays PE=4 SV=1
          Length = 1618

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 26/62 (41%), Positives = 43/62 (69%)
 Frame = -2

Query: 189 LTHLLIEYSDVFSSDLPPRLPHTRDVQHGIDVLPGTKPMSKPPYRMSXKEAKEVEIQLTD 10
           +T++L EYSDVF S++P  LP  R ++H ID++PG    ++ PYR + +E KE++ Q+ +
Sbjct: 684 ITNILQEYSDVFPSEIPEGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQE 743

Query: 9   YL 4
            L
Sbjct: 744 LL 745


>tr|Q7XFI5|Q7XFI5_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass (Putative gag-pol polyprotein) OS=Oryza sativa
           subsp. japonica GN=OSJNBb0052C09.15 PE=4 SV=1
          Length = 1708

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 25/62 (40%), Positives = 43/62 (69%)
 Frame = -2

Query: 189 LTHLLIEYSDVFSSDLPPRLPHTRDVQHGIDVLPGTKPMSKPPYRMSXKEAKEVEIQLTD 10
           +T+LL EY+D+F  ++PP LP  R ++H ID++PG    ++ PYR + +E KE++ Q+ +
Sbjct: 709 VTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQE 768

Query: 9   YL 4
            L
Sbjct: 769 LL 770


>tr|Q6UUJ1|Q6UUJ1_ORYSJ Putative gag-pol polyprotein (Putative
           polyprotein) OS=Oryza sativa subsp. japonica
           GN=OSJNBa0003M24.1 PE=4 SV=1
          Length = 1616

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 25/62 (40%), Positives = 43/62 (69%)
 Frame = -2

Query: 189 LTHLLIEYSDVFSSDLPPRLPHTRDVQHGIDVLPGTKPMSKPPYRMSXKEAKEVEIQLTD 10
           +T+LL EY+D+F  ++PP LP  R ++H ID++PG    ++ PYR + +E KE++ Q+ +
Sbjct: 709 VTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQE 768

Query: 9   YL 4
            L
Sbjct: 769 LL 770


>tr|Q6UUF6|Q6UUF6_ORYSJ Putative gag-pol polyprotein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0038J12.13 PE=4 SV=1
          Length = 1619

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 25/62 (40%), Positives = 43/62 (69%)
 Frame = -2

Query: 189 LTHLLIEYSDVFSSDLPPRLPHTRDVQHGIDVLPGTKPMSKPPYRMSXKEAKEVEIQLTD 10
           +T+LL EY+D+F  ++PP LP  R ++H ID++PG    ++ PYR + +E KE++ Q+ +
Sbjct: 605 VTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQE 664

Query: 9   YL 4
            L
Sbjct: 665 LL 666


>tr|Q6AU11|Q6AU11_ORYSJ Putative retrotransposon protein, 5'-partial
           (Fragment) OS=Oryza sativa subsp. japonica
           GN=OSJNBb0096H12.28 PE=4 SV=1
          Length = 1633

 Score = 60.1 bits (144), Expect = 6e-08
 Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
 Frame = -2

Query: 216 LLSPFARQKLTHLLIE-------YSDVFSSDLPPRLPHTRDVQHGIDVLPGTKPMSKPPY 58
           L S F R +L  +++E       Y DVF  DLP  +P  RD++  ID++PGT P+ K PY
Sbjct: 321 LSSEFLRSRLNQIILEKIPIVREYPDVFPDDLPG-MPPKRDIEFRIDLVPGTTPIHKRPY 379

Query: 57  RMSXKEAKEVEIQLTDYL 4
           RM+  E  EV+ Q+ D L
Sbjct: 380 RMAANELAEVKRQVDDLL 397