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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915818
Clone id YMU001_000077_D02
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000077_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGAAGCCTGAAGCTCGCCCTTAAACACAACCATAAGAGCAAAGCAAGACGTACTAGCTG
ATTGGGCCATCCTAATTGCACGCCACATATACCGCATAATCGCATGCGATGGTCTTAAAG
GAAGATAGCTTGCCATGCTTGCAGCTTCTCTAACAAGATATATACAGACACTTTCTGTGC
TTGGTGCACCGAACAATGCAAATCTCCACTCTTACATCACATGCTAAATGCCTGAACCTT
AGTCACTCACATCCTCCCTTCTCATACCTCACACTAATCCTATATTAGACGAGAACCGTT
CCCATTGAGACTTGATGAGGCTTCCAAAGGAGAAGCCACCCTTTCCTAAGGCATCTGCAG
CATACGCCATTCCCAACTTTGGCACATCTTTGACATGCAGTATCTGTTGACCGATCTCAT
TTCGCATAGCCTCTAAAATCTTCATGTCCACTGAGCCTCCT
■■Homology search results ■■ -
sp_hit_id Q96HA1
Definition sp|Q96HA1|P121A_HUMAN Nuclear envelope pore membrane protein POM 121 OS=Homo sapiens
Align length 60
Score (bit) 30.8
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915818|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_D02.
         (461 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96HA1|P121A_HUMAN Nuclear envelope pore membrane protein POM...    31   2.9  
sp|A6NF01|P121B_HUMAN Putative nuclear envelope pore membrane pr...    30   5.0  
sp|P0C2N6|SUV42_RAT Histone-lysine N-methyltransferase SUV420H2 ...    30   6.5  
sp|A8CG34|P121C_HUMAN Nuclear envelope pore membrane protein POM...    30   6.5  
sp|P32432|SFP1_YEAST Zinc finger protein SFP1 OS=Saccharomyces c...    29   8.5  

>sp|Q96HA1|P121A_HUMAN Nuclear envelope pore membrane protein POM
           121 OS=Homo sapiens GN=POM121 PE=1 SV=2
          Length = 1249

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 237 P*SLTSSLLIPHTNPILDENRSH*DLMRLPKEKPPFPKASAAYAIPNFGTSLTCSIC*PI 416
           P S  +SLL P TNP+L+  +     M+ P   PP P+++ A          T S+  P+
Sbjct: 582 PASPPTSLLAPSTNPLLESLKK----MQTPPSLPPCPESAGAATTEALSPPKTPSLLPPL 637


>sp|A6NF01|P121B_HUMAN Putative nuclear envelope pore membrane
           protein POM 121B OS=Homo sapiens GN=POM121B PE=5 SV=2
          Length = 834

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 237 P*SLTSSLLIPHTNPILDENRSH*DLMRLPKEKPPFPKASAA 362
           P S  +SLL P TNP+L+  +     M+ P   PP P+++ A
Sbjct: 166 PASPPTSLLAPSTNPLLESLKK----MQTPPSLPPCPESAGA 203


>sp|P0C2N6|SUV42_RAT Histone-lysine N-methyltransferase SUV420H2
           OS=Rattus norvegicus GN=Suv420h2 PE=2 SV=1
          Length = 470

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 125 IACHACSFSNKIYTDTFCAWCTEQCKSPLLHHM 223
           ++  ACS  + +  D FCA C   C  P+  HM
Sbjct: 280 LSLRACSHLSPLRPDPFCAACQPSCLLPVSPHM 312


>sp|A8CG34|P121C_HUMAN Nuclear envelope pore membrane protein POM
           121C OS=Homo sapiens GN=POM121C PE=1 SV=2
          Length = 1229

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 252 SSLLIPHTNPILDENRSH*DLMRLPKEKPPFPKASAAYAIPNFGTSLTCSIC*PI 416
           +SLL P TNP+L+  +     M+ P   PP P+++ A          T S+  P+
Sbjct: 564 TSLLAPSTNPLLESLKK----MQTPPSLPPCPESAGAATTEALSPPKTPSLLPPL 614


>sp|P32432|SFP1_YEAST Zinc finger protein SFP1 OS=Saccharomyces
           cerevisiae GN=SFP1 PE=1 SV=1
          Length = 683

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 421 NEIGQQILHVKDVPKLGMAYAADALGKGGFSFGSLIKSQWER 296
           N + Q +L  +D+ KL     A + G GG S+GS+    W R
Sbjct: 86  NIMDQTLLTPQDIAKLRRESIAHSQGMGGVSWGSISVGSWLR 127
tr_hit_id A9NND6
Definition tr|A9NND6|A9NND6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 65
Score (bit) 45.4
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915818|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_D02.
         (461 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NND6|A9NND6_PICSI Putative uncharacterized protein OS=Picea...    45   0.001
tr|A9T9E5|A9T9E5_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.058
tr|Q6YZC9|Q6YZC9_ORYSJ Uridylyl transferase-like OS=Oryza sativa...    39   0.13 
tr|Q0J456|Q0J456_ORYSJ Os08g0533300 protein OS=Oryza sativa subs...    39   0.13 
tr|B8B938|B8B938_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.13 
tr|A9PH33|A9PH33_POPTR Putative uncharacterized protein OS=Popul...    39   0.17 
tr|A7QUU8|A7QUU8_VITVI Chromosome chr1 scaffold_180, whole genom...    38   0.29 
tr|A5AWQ7|A5AWQ7_VITVI Putative uncharacterized protein (Chromos...    38   0.29 
tr|B8A0I9|B8A0I9_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.49 
tr|B6SYQ4|B6SYQ4_MAIZE ACR5 OS=Zea mays PE=2 SV=1                      37   0.49 
tr|B6P6F7|B6P6F7_BRAFL Putative uncharacterized protein OS=Branc...    37   0.64 
tr|B7ZYV0|B7ZYV0_MAIZE Putative uncharacterized protein OS=Zea m...    34   3.2  
tr|B6SL14|B6SL14_MAIZE ACR4 OS=Zea mays PE=2 SV=1                      34   3.2  
tr|B4G0N4|B4G0N4_MAIZE Putative uncharacterized protein OS=Zea m...    34   3.2  
tr|Q75IY1|Q75IY1_ORYSJ Os03g0413100 protein OS=Oryza sativa subs...    33   7.0  
tr|Q75IY0|Q75IY0_ORYSJ Putative ACT domain containing protein, A...    33   7.0  
tr|Q0J938|Q0J938_ORYSJ Os04g0674000 protein (Fragment) OS=Oryza ...    33   7.0  
tr|A3AJ25|A3AJ25_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.0  
tr|A2XHY2|A2XHY2_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.0  
tr|A7T393|A7T393_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   7.0  
tr|Q0ZCE5|Q0ZCE5_POPTR Putative uncharacterized protein OS=Popul...    33   9.2  

>tr|A9NND6|A9NND6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 466

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
 Frame = -2

Query: 454 SVDMKILEAMRNEIGQ-QILHVKDVPKLGMAYAA---DALGKGGFSFGSLIKSQWERFSS 287
           ++DMK++EAMR EIG    L VK++P   +AY +   D+  K  FSF SL K+Q +R S 
Sbjct: 401 NIDMKVVEAMRREIGHTMFLQVKNMPG-DIAYNSLPIDSRSKFRFSFASLFKAQLDRISY 459

Query: 286 NIGLV 272
           N  ++
Sbjct: 460 NFRMI 464


>tr|A9T9E5|A9T9E5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_142202 PE=4 SV=1
          Length = 454

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 20/42 (47%), Positives = 26/42 (61%)
 Frame = -2

Query: 460 GGSVDMKILEAMRNEIGQQILHVKDVPKLGMAYAADALGKGG 335
           G +VDMK++EAMR  IG  IL VK VP+     ++  L  GG
Sbjct: 390 GCTVDMKVVEAMRKSIGHAILQVKGVPRQEPELSSSKLSLGG 431


>tr|Q6YZC9|Q6YZC9_ORYSJ Uridylyl transferase-like OS=Oryza sativa
           subsp. japonica GN=P0702E04.34 PE=4 SV=1
          Length = 475

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 22/63 (34%), Positives = 37/63 (58%)
 Frame = -2

Query: 460 GGSVDMKILEAMRNEIGQQILHVKDVPKLGMAYAADALGKGGFSFGSLIKSQWERFSSNI 281
           G  V+   +EA+R EIG+Q+L V++    G        G+   S G++I+S+ E+F  N+
Sbjct: 411 GEPVEAHAVEAVRAEIGEQVLFVRE--DAGGGEPRSPPGRDRRSLGNMIRSRSEKFLYNL 468

Query: 280 GLV 272
           GL+
Sbjct: 469 GLI 471


>tr|Q0J456|Q0J456_ORYSJ Os08g0533300 protein OS=Oryza sativa subsp.
           japonica GN=Os08g0533300 PE=4 SV=1
          Length = 498

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 22/63 (34%), Positives = 37/63 (58%)
 Frame = -2

Query: 460 GGSVDMKILEAMRNEIGQQILHVKDVPKLGMAYAADALGKGGFSFGSLIKSQWERFSSNI 281
           G  V+   +EA+R EIG+Q+L V++    G        G+   S G++I+S+ E+F  N+
Sbjct: 434 GEPVEAHAVEAVRAEIGEQVLFVRE--DAGGGEPRSPPGRDRRSLGNMIRSRSEKFLYNL 491

Query: 280 GLV 272
           GL+
Sbjct: 492 GLI 494


>tr|B8B938|B8B938_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30028 PE=4 SV=1
          Length = 467

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 22/63 (34%), Positives = 37/63 (58%)
 Frame = -2

Query: 460 GGSVDMKILEAMRNEIGQQILHVKDVPKLGMAYAADALGKGGFSFGSLIKSQWERFSSNI 281
           G  V+   +EA+R EIG+Q+L V++    G        G+   S G++I+S+ E+F  N+
Sbjct: 403 GEPVEAHAVEAVRAEIGEQVLFVRE--DAGGGEPRSPPGRDRRSLGNMIRSRSEKFLYNL 460

Query: 280 GLV 272
           GL+
Sbjct: 461 GLI 463


>tr|A9PH33|A9PH33_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 448

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 23/63 (36%), Positives = 35/63 (55%)
 Frame = -2

Query: 460 GGSVDMKILEAMRNEIGQQILHVKDVPKLGMAYAADALGKGGFSFGSLIKSQWERFSSNI 281
           G  V  + +EA+R EIG  ILHV D         +    +G FS G++ +S+ E+F  N+
Sbjct: 386 GYPVKNETIEAVRKEIGLTILHVND----DAHSKSPPQERGLFSLGNIFRSRSEKFLYNL 441

Query: 280 GLV 272
           GL+
Sbjct: 442 GLI 444


>tr|A7QUU8|A7QUU8_VITVI Chromosome chr1 scaffold_180, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006985001
           PE=4 SV=1
          Length = 447

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = -2

Query: 460 GGSVDMKILEAMRNEIGQQILHVKDVPKLGMAYAADALGKGG-FSFGSLIKSQWERFSSN 284
           G  V  + +EA+R EIG  IL VKD      AY+     + G FS G+L +S+ E+   N
Sbjct: 385 GNPVKSETIEAVRKEIGLTILRVKD-----DAYSKSPPQESGRFSLGNLFRSRSEKVLYN 439

Query: 283 IGLV 272
           +GL+
Sbjct: 440 LGLM 443


>tr|A5AWQ7|A5AWQ7_VITVI Putative uncharacterized protein (Chromosome
           chr18 scaffold_1, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00014345001 PE=4 SV=1
          Length = 447

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 460 GGSVDMKILEAMRNEIGQ-QILHVKDVPKLGMAYAADALGKGGFSFGSLIKSQWERF 293
           G  VDMK +EA+R EIG   +L+VK  P       A    K  F FGSL    +ERF
Sbjct: 393 GKPVDMKTIEALRKEIGHTMMLNVKKEPSSAKTPEASGWAKTSFFFGSL----FERF 445


>tr|B8A0I9|B8A0I9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 471

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = -2

Query: 460 GGSVDMKILEAMRNEIGQQILHVKDVPKLGMAYA---ADALGKGGFSFGSLIKSQWERFS 290
           G  V  + + A+R EIG+Q+L V++      A A      +  G  S G++I+S+ E+F 
Sbjct: 402 GEPVQAQAVAAVRAEIGEQLLFVREHQDAAAAAANGTRSTVAGGRRSLGNMIRSRSEKFL 461

Query: 289 SNIGLV 272
            N+GL+
Sbjct: 462 YNLGLI 467


>tr|B6SYQ4|B6SYQ4_MAIZE ACR5 OS=Zea mays PE=2 SV=1
          Length = 471

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = -2

Query: 460 GGSVDMKILEAMRNEIGQQILHVKDVPKLGMAYA---ADALGKGGFSFGSLIKSQWERFS 290
           G  V  + + A+R EIG+Q+L V++      A A      +  G  S G++I+S+ E+F 
Sbjct: 402 GEPVQAQAVAAVRAEIGEQLLFVREHQDAAAAAANGTRSTVAGGRRSLGNMIRSRSEKFL 461

Query: 289 SNIGLV 272
            N+GL+
Sbjct: 462 YNLGLI 467