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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915820
Clone id YMU001_000077_D07
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000077_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCACTCCTGCAAGTCATCCTCAAAAACCTACTCTTCAACCAAGTAGGATGCACAATCAA
ACCATATCTCTTCCTCCAATACGGAATCACCATCATGATACACAAGAGAAGGCTGCTCGA
CTGGCACACAAAGCATCTTCGCACTTGCACTATGCTTCTCCAAGATCTGCAGATGGCTGA
TAGGCAGCTCGTATATGCTGTTCATCACTTCATCCACATGAAAAACATCATAAGTCTCAT
ACCTAGAAGATAGGGATTCTGTCTCCCACATGTTATCTGTGTCCAAAGCACTGTTAGAGC
TTTTAGAGCTTTCTGGCTCCTTTTATAATTTTGTTGGTACTTGCACCTCTGCTACCTTTC
CCGTTGGTGGTTGTGGAACTAACACTTCTTCTTTATGATCTTCTGTCACCTCGTCCTCTT
GAGCAAGCAAACTGGGTGGCACTCTGAGTATGCCTCCCTGTATCTTTTGAGACCTGGTTG
GCACTTGTTCTACCTCCTCTAGCCTGGCATCAACTTCAAGTGTTTTGATCAAATTCATAT
CAAGAAAAGGAGATTTTACCTCTTGATGCTCATCCATTTGTTTGAGCC
■■Homology search results ■■ -
sp_hit_id A5UMF4
Definition sp|A5UMF4|RFCL_METS3 Replication factor C large subunit OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)
Align length 65
Score (bit) 35.0
E-value 0.28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915820|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_D07.
         (588 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5UMF4|RFCL_METS3 Replication factor C large subunit OS=Metha...    35   0.28 
sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sa...    34   0.62 
sp|Q9UM73|ALK_HUMAN ALK tyrosine kinase receptor OS=Homo sapiens...    32   3.1  
sp|B2GUV7|IF2P_RAT Eukaryotic translation initiation factor 5B O...    31   4.0  
sp|Q7TQF7|AMPH_MOUSE Amphiphysin OS=Mus musculus GN=Amph PE=1 SV=1     31   5.2  
sp|Q96T25|ZIC5_HUMAN Zinc finger protein ZIC 5 OS=Homo sapiens G...    31   5.3  
sp|Q9D6B9|HRCT1_MOUSE Histidine-rich carboxyl terminus protein 1...    31   5.3  
sp|P57999|ZAN_RABIT Zonadhesin (Fragment) OS=Oryctolagus cunicul...    30   6.8  
sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1           30   6.8  
sp|P64800|Y1320_MYCBO Uncharacterized protein Mb1320 OS=Mycobact...    30   8.9  
sp|P64799|Y1289_MYCTU Uncharacterized protein Rv1289/MT1327 OS=M...    30   8.9  
sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 hom...    30   9.0  
sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyost...    30   9.0  
sp|O80582|FBK46_ARATH F-box/Kelch-repeat protein At2g44130 OS=Ar...    30   9.0  

>sp|A5UMF4|RFCL_METS3 Replication factor C large subunit
           OS=Methanobrevibacter smithii (strain PS / ATCC 35061 /
           DSM 861) GN=rfcL PE=3 SV=1
          Length = 492

 Score = 35.0 bits (79), Expect = 0.28
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = -3

Query: 574 DEHQEVKSPFLDMNLIKTLEVDARLEEVEQVPTRSQKIQGGILRVPPSLLAQEDEVTEDH 395
           DE +  ++  +   +I+ +E     + VEQ   R+Q+IQ G++   P     ++E TE+ 
Sbjct: 392 DEIKRFRTRKIPKKVIEKMEKQKAQKRVEQRDARAQEIQDGLMATIPPQKEVKEEPTEEI 451

Query: 394 KEEVL 380
           +EEV+
Sbjct: 452 QEEVV 456


>sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens
            GN=CENPE PE=1 SV=2
          Length = 2701

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 33/118 (27%), Positives = 51/118 (43%)
 Frame = -3

Query: 586  LKQMDEHQEVKSPFLDMNLIKTLEVDARLEEVEQVPTRSQKIQGGILRVPPSLLAQEDEV 407
            LKQ  EH++ K   L     K LE+  RL+E ++      K +  + RV  +L  + D++
Sbjct: 1550 LKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQL 1609

Query: 406  TEDHKEEVLVPQPPTGKVAEVQVPTKL*KEPEXXXXXXSALDTDNMWETESLSSRYET 233
             E+ KE V        K+ E Q      KE +           + M E E L  ++ET
Sbjct: 1610 KENTKEIV-------AKMKESQE-----KEYQFLKMTAVNETQEKMCEIEHLKEQFET 1655


>sp|Q9UM73|ALK_HUMAN ALK tyrosine kinase receptor OS=Homo sapiens
            GN=ALK PE=1 SV=2
          Length = 1620

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -3

Query: 538  MNLIKTLEVDARLEEVEQVPTRSQKIQGGILRVPPSLLAQEDEVTEDHKEEVLVPQPPTG 359
            +N    +E    +EE E+VP R +  +G    VPP L++Q+ +  E+       P P T 
Sbjct: 1393 INTALPIEYGPLVEEEEKVPVRPKDPEG----VPPLLVSQQAKREEERSPAAPPPLPTTS 1448

Query: 358  KVAEVQVPT 332
                 + PT
Sbjct: 1449 SGKAAKKPT 1457


>sp|B2GUV7|IF2P_RAT Eukaryotic translation initiation factor 5B
           OS=Rattus norvegicus GN=Eif5b PE=1 SV=1
          Length = 1216

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -3

Query: 529 IKTLEVDARLEEVEQ-VPTRSQKIQGGILRVPPSLLAQEDEVTED 398
           ++T+EV A +E V+Q VP + +         PPS+ A+EDE TED
Sbjct: 463 LETVEVSAPVEVVDQGVPEKEE--------TPPSVDAEEDEETED 499


>sp|Q7TQF7|AMPH_MOUSE Amphiphysin OS=Mus musculus GN=Amph PE=1 SV=1
          Length = 686

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 523 TLEVDARLEEVEQ-VPTRSQKIQGGILRVPPSL-LAQEDEVTEDHKEEVLVPQPPTGKVA 350
           T++ D  + E EQ +PT  Q  +       P+  L    E+ E  +E V+ P   TG+  
Sbjct: 413 TMQTDQNMAETEQALPTEPQAEEPPATAAAPTAGLDLGLEMEEPKEEAVIPPATDTGETV 472

Query: 349 EVQVPTK 329
           E  VPT+
Sbjct: 473 ETAVPTE 479


>sp|Q96T25|ZIC5_HUMAN Zinc finger protein ZIC 5 OS=Homo sapiens
           GN=ZIC5 PE=1 SV=1
          Length = 639

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +1

Query: 4   TPASHPQKPTLQPSRMHNQTISLPPIRNHHHDTQEKAARLAHKASSHLHYAS 159
           TP   P  P L P+R H+ T+S P + N      E     A  A SHLH  S
Sbjct: 569 TPVGAPLSPVLDPARSHSSTLS-PQVTN----LNEWYVCQASGAPSHLHTPS 615


>sp|Q9D6B9|HRCT1_MOUSE Histidine-rich carboxyl terminus protein 1
           OS=Mus musculus GN=Hrct1 PE=2 SV=2
          Length = 109

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = +1

Query: 37  QPSRMHNQTISLPPIRNHHHDTQEKAARLAHKASSHLHYASPRSADG**AARICCSSLHP 216
           +P   H + + LP + +HHH        +      H H+ SP               LH 
Sbjct: 50  RPRLFHGRRLRLPRLVHHHH--HHHVTGVTSVGVHHHHHHSPHR-------------LHH 94

Query: 217 HEKHHKSH 240
           H+ HH+ H
Sbjct: 95  HKHHHRHH 102


>sp|P57999|ZAN_RABIT Zonadhesin (Fragment) OS=Oryctolagus cuniculus
           GN=ZAN PE=2 SV=2
          Length = 2282

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -3

Query: 532 LIKTLEVDARLEEVEQVPTRSQKIQGGILRVPPSLLAQEDEVTEDHKEEVLVPQPPTGKV 353
           +I T +     E   + P  + ++  G  ++P       +E+TE  KE  +  +PPT   
Sbjct: 327 VIPTEQPTVPAEGTTEPPEGTIELPEGTTKLPEETTELPEEITEPPKETTIPTEPPTVPT 386

Query: 352 AEVQVPTK 329
               VPT+
Sbjct: 387 EPPTVPTE 394


>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1
          Length = 35213

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
 Frame = -3

Query: 526   KTLEVDARLEEVEQVPTRSQKIQGG-------------ILRVPPSLLAQEDEVTEDHKEE 386
             K  EV  ++EE   +P + +++                I   PPS+  +E    E+ +EE
Sbjct: 11139 KVPEVSKKVEERRIIPPKEEEVPPAEVYEEAEEPTPEEIPEEPPSIEEEEIVEEEEEEEE 11198

Query: 385   VLVPQ-PPTGKVAEVQVPTKL*KEPE 311
             VL P+ P   K A  + PT + K+ E
Sbjct: 11199 VLPPRAPEVVKKAVPEAPTPVPKKAE 11224


>sp|P64800|Y1320_MYCBO Uncharacterized protein Mb1320
           OS=Mycobacterium bovis GN=Mb1320 PE=4 SV=1
          Length = 210

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 335 WYLHLCYLSRWWLWN*HF 388
           WY H+ ++S WW W  HF
Sbjct: 166 WYDHVFFISVWWGWQDHF 183
tr_hit_id A0BDH9
Definition tr|A0BDH9|A0BDH9_PARTE Chromosome undetermined scaffold_100, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 77
Score (bit) 38.9
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915820|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_D07.
         (588 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0BDH9|A0BDH9_PARTE Chromosome undetermined scaffold_100, who...    39   0.22 
tr|B4PXE7|B4PXE7_DROYA GE17825 OS=Drosophila yakuba GN=GE17825 P...    36   1.4  
tr|Q07KP6|Q07KP6_RHOP5 NADPH:quinone reductase OS=Rhodopseudomon...    35   2.4  
tr|B2T0B2|B2T0B2_BURPP Xanthine dehydrogenase, molybdopterin bin...    35   3.2  
tr|Q2GV64|Q2GV64_CHAGB Putative uncharacterized protein OS=Chaet...    35   3.2  
tr|Q71XB3|Q71XB3_LISMF Hydrolase, haloacid dehalogenase-like fam...    34   5.3  
tr|Q4EE12|Q4EE12_LISMO Hydrolase, haloacid dehalogenase-like fam...    34   5.3  
tr|B8DF57|B8DF57_LISMO Phosphoglycolate phosphatase OS=Listeria ...    34   5.3  
tr|Q755X5|Q755X5_ASHGO AER393Cp OS=Ashbya gossypii GN=AER393C PE...    34   5.3  
tr|Q144X6|Q144X6_BURXL Xanthine dehydrogenase, molybdenum bindin...    34   5.4  
tr|B1FW89|B1FW89_9BURK Xanthine dehydrogenase, molybdopterin bin...    34   5.4  
tr|Q5W383|Q5W383_9BACT Probable RND efflux membrane fusion prote...    34   7.0  
tr|B6QGW7|B6QGW7_PENMA Intracellular protein transport protein (...    34   7.0  
tr|B4MV09|B4MV09_DROWI GK14705 OS=Drosophila willistoni GN=GK147...    34   7.1  
tr|B2A5B7|B2A5B7_NATTJ Putative uncharacterized protein OS=Natra...    33   9.1  
tr|A3ISK2|A3ISK2_9CHRO Putative uncharacterized protein OS=Cyano...    33   9.1  
tr|Q24BS5|Q24BS5_TETTH MIF4G domain containing protein OS=Tetrah...    33   9.1  
tr|B0D4H3|B0D4H3_LACBS Predicted protein OS=Laccaria bicolor (st...    33   9.2  

>tr|A0BDH9|A0BDH9_PARTE Chromosome undetermined scaffold_100, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00027625001 PE=4 SV=1
          Length = 970

 Score = 38.9 bits (89), Expect = 0.22
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = -3

Query: 586 LKQMDEHQEVKSPFLDMNLIKTLEV--DARLEEVEQVPTRSQKIQGGILRVPPSLLAQED 413
           L   ++H+ VK    ++N  +T+EV  ++  EEVE VP ++ K+ GG   +PP    +ED
Sbjct: 295 LPPQEDHKNVKIQTNNVNSDETVEVVEESEEEEVEIVPQKTTKV-GGKTSLPPKKNQEED 353

Query: 412 EVTEDHKEEVLVPQPPT 362
           E +E        P+PP+
Sbjct: 354 EKSE--------PEPPS 362


>tr|B4PXE7|B4PXE7_DROYA GE17825 OS=Drosophila yakuba GN=GE17825 PE=4
            SV=1
          Length = 3630

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
 Frame = -3

Query: 583  KQMDEHQEVKSPFLDMNLIKT-----LEVDARLE-EVEQVPTRSQKIQGGILRVPPSLLA 422
            K  D+H + K P L   ++K      LEV+   E  VE+  T  Q+++ G +   PS   
Sbjct: 2937 KIFDKHSK-KHPALKPKVVKVESETGLEVETGTEVAVEEETTEVQQLEQGFVTTTPSTPP 2995

Query: 421  QEDEVTEDHKEEVLVPQPPTGKVAEVQVPTKL*KEPEXXXXXXSALDTDNMWETESLSSR 242
                      +       P     E +  T    EPE      + ++T+N+ E E+ ++ 
Sbjct: 2996 SPPAPPSTQSDTATTTDTPPETKTETEPET----EPETETEIETEIETENVTEIETATNA 3051

Query: 241  YETYDVFHVDEVMNSIYELP 182
             E   V   D+ ++S  + P
Sbjct: 3052 NEATSVNSQDQTISSTTQAP 3071


>tr|Q07KP6|Q07KP6_RHOP5 NADPH:quinone reductase OS=Rhodopseudomonas
           palustris (strain BisA53) GN=RPE_3558 PE=4 SV=1
          Length = 337

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 27/98 (27%), Positives = 40/98 (40%)
 Frame = -3

Query: 478 TRSQKIQGGILRVPPSLLAQEDEVTEDHKEEVLVPQPPTGKVAEVQVPTKL*KEPEXXXX 299
           T+  K Q   L++PP  L      TE H   ++    P GK+A +  P+ L   P     
Sbjct: 203 TQPMKPQIDTLKLPPVALIASLTGTEQHFPALIDILAPQGKIALIDDPSTLNAMP----- 257

Query: 298 XXSALDTDNMWETESLSSRYETYDVFHVDEVMNSIYEL 185
              A      WE     S YET D+     ++N + +L
Sbjct: 258 -LKAKSASLHWEAMFARSSYETPDMIAQHHLLNDVADL 294


>tr|B2T0B2|B2T0B2_BURPP Xanthine dehydrogenase, molybdopterin
           binding subunit OS=Burkholderia phytofirmans (strain DSM
           17436 / PsJN) GN=Bphyt_0794 PE=4 SV=1
          Length = 788

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
 Frame = +1

Query: 31  TLQPSRMHNQTISLPPIRNHHHDTQEKAARLAHKAS--------------SHLHYASPRS 168
           T Q +R  NQ + LPP++    +   K AR AH+ +                + YA P+ 
Sbjct: 147 TAQQARAANQHV-LPPMKLARGEADTKIARAAHREAGEMLLGGQEQFYLEGQISYAVPKD 205

Query: 169 ADG**AARICCSSLHPHEKHH 231
            DG     + CS+ HP E  H
Sbjct: 206 DDG---MHVYCSTQHPTEMQH 223


>tr|Q2GV64|Q2GV64_CHAGB Putative uncharacterized protein OS=Chaetomium
            globosum GN=CHGG_08140 PE=4 SV=1
          Length = 1120

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +1

Query: 4    TPASHP-----QKPTLQPSRMHNQTISLPPIRNHHHDTQEKA 114
            TP+ HP     Q+P + P    NQ +  PPI  +HH T + A
Sbjct: 1042 TPSQHPLPQTQQQPRVSPPTAQNQPLPTPPIPPNHHSTPDHA 1083


>tr|Q71XB3|Q71XB3_LISMF Hydrolase, haloacid dehalogenase-like family
           OS=Listeria monocytogenes serotype 4b (strain F2365)
           GN=LMOf2365_2286 PE=4 SV=1
          Length = 209

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 286 LDTDNMWETESLSSRYETYDVFHVDEVMNSI 194
           LDT+N+W TE+++   ETYD+   DE+   I
Sbjct: 13  LDTENLWYTETMNYLKETYDIDLPDEIYQQI 43


>tr|Q4EE12|Q4EE12_LISMO Hydrolase, haloacid dehalogenase-like family
           OS=Listeria monocytogenes str. 4b H7858 GN=LMOh7858_2389
           PE=4 SV=1
          Length = 211

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 286 LDTDNMWETESLSSRYETYDVFHVDEVMNSI 194
           LDT+N+W TE+++   ETYD+   DE+   I
Sbjct: 15  LDTENLWYTETMNYLKETYDIDLPDEIYQQI 45


>tr|B8DF57|B8DF57_LISMO Phosphoglycolate phosphatase OS=Listeria
           monocytogenes HCC23 GN=LMHCC_0289 PE=4 SV=1
          Length = 209

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 286 LDTDNMWETESLSSRYETYDVFHVDEVMNSI 194
           LDT+N+W TE+++   ETYD+   DE+   I
Sbjct: 13  LDTENLWYTETMNYLKETYDIDLPDEIYQQI 43


>tr|Q755X5|Q755X5_ASHGO AER393Cp OS=Ashbya gossypii GN=AER393C PE=4
            SV=1
          Length = 3697

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
 Frame = -3

Query: 181  ISHLQILEKHSA------SAKMLCVPVEQPSLVYHDGDSVLEEEIWFDCASYLVE 35
            + H  +L+ +SA      S+++ CV VEQPS+  H  + VL E I F  +SYL E
Sbjct: 1077 LDHFCLLQVNSALVNKRTSSELFCVNVEQPSM--HISNEVLIEGILFGLSSYLSE 1129


>tr|Q144X6|Q144X6_BURXL Xanthine dehydrogenase, molybdenum binding
           subunit apoprotein / Xanthine oxidase OS=Burkholderia
           xenovorans (strain LB400) GN=Bxeno_A0575 PE=4 SV=1
          Length = 788

 Score = 34.3 bits (77), Expect = 5.4
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
 Frame = +1

Query: 31  TLQPSRMHNQTISLPPIRNHHHDTQEKAARLAHKAS--------------SHLHYASPRS 168
           T Q +R  NQ + LPP++    +   K AR AH+ +                + YA P+ 
Sbjct: 147 TAQQARAANQHV-LPPMKLARGEAGTKIARAAHREAGEMLLGGQEQFYLEGQISYAVPKD 205

Query: 169 ADG**AARICCSSLHPHEKHH 231
            DG     + CS+ HP E  H
Sbjct: 206 DDG---MHVYCSTQHPTEMQH 223