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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915830
Clone id YMU001_000077_E09
Library
Length 601
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000077_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGAAGATTTGCGGCCGCGAAGTAACTTGCTTGTGCTTCCCCTTCTTCTTGGCTGCTGC
TTTACAAGCTACAACACTTTTTTGCTTTGCAATGCTGATAACAGATGAAATGAGTTCTTC
TTCTTTTTTACTAAACAAATTGCAAGATTTTTCCATGCTCCTTGCAGAGTTCTCTTGACT
ACCACTTGAAGAAGACAGACCCACACCTTCCACGTCATTTGCAGAACTAGAGGCAGCTTT
TCTCTTCTTTTCAGCTGATTCTCTGCAAAATTTCGCTTGGCTTTGATATCTCATGTACTC
TTTCACTCGTTTGAAATTTCTGCACAGTTGCTAAGTCAAGGTTTTCACTACAGACTTTAT
CAGCTTCAGCAACAGCATCAACTTTAGCTTCAACAAAGGCTTCATTGGCACGGTTCATAT
CCTCAGCACCATTCTTGCTTTTATTCACTATACCAACTTCAAATTCCTTGTTTCCACATG
CGATTTCTGAAACTGCAGCTTCCATGCTCTCATTGGGCATGTTGTCCAATTCATATCCTA
AATCACTTGCTTCAGCCGGCCCATTGAGAGTAGATTTCTGGCCATGAGAAGCCTGATGCT
C
■■Homology search results ■■ -
sp_hit_id Q8CG09
Definition sp|Q8CG09|MRP1_RAT Multidrug resistance-associated protein 1 OS=Rattus norvegicus
Align length 45
Score (bit) 32.3
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915830|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_E09.
         (582 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CG09|MRP1_RAT Multidrug resistance-associated protein 1 OS=...    32   1.8  
sp|Q864R9|MRP1_MACFA Multidrug resistance-associated protein 1 O...    31   3.9  
sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1 O...    31   5.1  
sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1 O...    31   5.1  
sp|A6QBQ5|IF2_SULNB Translation initiation factor IF-2 OS=Sulfur...    30   8.8  

>sp|Q8CG09|MRP1_RAT Multidrug resistance-associated protein 1
           OS=Rattus norvegicus GN=Abcc1 PE=1 SV=2
          Length = 1532

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 387 WHGSYPQHHSCFYSLYQLQIPCFHMRFLKLQLPCSHWACCPIHIL 521
           WH S P    CF +     +PCF++           W+C P++ L
Sbjct: 22  WHTSNPDFTKCFQNTVLTWVPCFYL-----------WSCFPLYFL 55


>sp|Q864R9|MRP1_MACFA Multidrug resistance-associated protein 1
           OS=Macaca fascicularis GN=ABCC1 PE=2 SV=1
          Length = 1531

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 387 WHGSYPQHHSCFYSLYQLQIPCFHMRFLKLQLPCSHWACCPIHIL 521
           W+ S P    CF +   + +PCF++           WAC P + L
Sbjct: 22  WYTSNPDFTKCFQNTVLVWVPCFYL-----------WACFPFYFL 55


>sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1
           OS=Mus musculus GN=Abcc1 PE=2 SV=1
          Length = 1528

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 387 WHGSYPQHHSCFYSLYQLQIPCFHMRFLKLQLPCSHWACCPIH 515
           WH S P    CF +     +PCF++           W+C P++
Sbjct: 22  WHTSNPDFTKCFQNTVLTWVPCFYL-----------WSCFPLY 53


>sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1
           OS=Homo sapiens GN=ABCC1 PE=1 SV=2
          Length = 1531

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 387 WHGSYPQHHSCFYSLYQLQIPCFHMRFLKLQLPCSHWACCPIHIL 521
           W+ S P    CF +   + +PCF++           WAC P + L
Sbjct: 22  WNTSNPDFTKCFQNTVLVWVPCFYL-----------WACFPFYFL 55


>sp|A6QBQ5|IF2_SULNB Translation initiation factor IF-2
           OS=Sulfurovum sp. (strain NBC37-1) GN=infB PE=3 SV=1
          Length = 906

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -1

Query: 561 QKSTLNGPAEASDLGYELDNMPNESMEAAVSEIACGNKEFEVGIVNKS-KNGAEDMNRAN 385
           +K    GPAEA + G ++D   ++SM     +I  G  E EV +++ S KN  EDM R  
Sbjct: 216 KKKVKKGPAEARETGKKIDIFNHDSMS---GDIDSGFGEEEVVLLDFSDKNIYEDMMRQE 272

Query: 384 E 382
           +
Sbjct: 273 Q 273
tr_hit_id A7SQ06
Definition tr|A7SQ06|A7SQ06_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 38
Score (bit) 34.3
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915830|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_E09.
         (582 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7SQ06|A7SQ06_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   5.2  
tr|B4KYT3|B4KYT3_DROMO GI12447 OS=Drosophila mojavensis GN=GI124...    33   9.0  

>tr|A7SQ06|A7SQ06_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g126967 PE=4 SV=1
          Length = 225

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 417 CFYSLYQLQIPCFHMRFLKLQLPCSHWACCPIHILNHL 530
           C Y LY L  PC  + F+ L +  S    CP++I+ HL
Sbjct: 28  CLYYLYYLTSPCLSVLFILLDISMSQ---CPLYIIGHL 62


>tr|B4KYT3|B4KYT3_DROMO GI12447 OS=Drosophila mojavensis GN=GI12447
           PE=4 SV=1
          Length = 725

 Score = 33.5 bits (75), Expect = 9.0
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -1

Query: 576 QASHGQKSTLNGPAEASDLGYELDNMPNESMEAAVSEIACGNKEFEVGIV 427
           Q  +G  ++++ PA+A DL    + +  E  EAA  E A G +  + G++
Sbjct: 40  QHPNGNSASIDAPADAEDLSRLQERLDRELAEAAAKEAAAGTRVMQDGVL 89