BP915836
Clone id YMU001_000077_F11
Library
Length 504
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000077_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GGATCAGTAGGGGCTGGTTCAAATGTAGGCCACAGATGGCCGTTGGATTCCCCCTCGACG
AGGCAGATTACAAGCGGATGCGAGGCGGGTAAACTGTACTTGATACCATACCATGCAGTT
AAGAACATGATCAGATGGTCGGGGACGTACAACAATCATGGTATATCGGGCTGAGCCGGG
GGGCCAACGAACAACTAAGACGTGTGGTGAGATATGTTGGCAACAGTGGAATAGCATGTA
GGGGTAGTCTATAGATGGCCGATGGGTTCCCCCTCGACAAAGCGGGGCTGTCCACCGAGT
GGGAGCGCAACATGAGTGTGCTTGAGAATAGCCAACGTAGTAGAGGCCAAATCACTATGA
CAGGGCGATGCAATGAAAAGGGTGGCAGAATTTTCAGCGGTTTTTGCAAACCAAGTGCGG
TGGCGCTCAAGAAGGCATGGAAGGAAGAGATGGCAAATGTGATACATGCACCACATTGCG
AGAGGGTAGGCTCCAATGAGCACC
■■Homology search results ■■ -
sp_hit_id P03518
Definition sp|P03518|VGLM_RVFV Envelope glycoprotein OS=Rift valley fever virus
Align length 111
Score (bit) 33.5
E-value 0.58
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915836|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_F11.
(504 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P03518|VGLM_RVFV Envelope glycoprotein OS=Rift valley fever v... 33 0.58
sp|Q9LFA6|BGAL2_ARATH Beta-galactosidase 2 OS=Arabidopsis thalia... 31 3.7
sp|Q7V872|PCBA_PROMM Divinyl chlorophyll a/b light-harvesting pr... 30 4.9
sp|Q86W25|NAL13_HUMAN NACHT, LRR and PYD domains-containing prot... 30 4.9
sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota... 30 6.4
sp|Q3YU89|AMPA_SHISS Probable cytosol aminopeptidase OS=Shigella... 30 8.3
sp|Q83P64|AMPA_SHIFL Probable cytosol aminopeptidase OS=Shigella... 30 8.3
sp|Q0SXK0|AMPA_SHIF8 Probable cytosol aminopeptidase OS=Shigella... 30 8.3
sp|Q328S1|AMPA_SHIDS Probable cytosol aminopeptidase OS=Shigella... 30 8.3
sp|Q31TK2|AMPA_SHIBS Probable cytosol aminopeptidase OS=Shigella... 30 8.3
sp|Q1R2Z4|AMPA_ECOUT Probable cytosol aminopeptidase OS=Escheric... 30 8.3
sp|P68767|AMPA_ECOLI Cytosol aminopeptidase OS=Escherichia coli ... 30 8.3
sp|B1ISB1|AMPA_ECOLC Probable cytosol aminopeptidase OS=Escheric... 30 8.3
sp|P68766|AMPA_ECOL6 Cytosol aminopeptidase OS=Escherichia coli ... 30 8.3
sp|Q0T9D1|AMPA_ECOL5 Probable cytosol aminopeptidase OS=Escheric... 30 8.3
sp|A1AJG3|AMPA_ECOK1 Probable cytosol aminopeptidase OS=Escheric... 30 8.3
sp|A8A816|AMPA_ECOHS Probable cytosol aminopeptidase OS=Escheric... 30 8.3
sp|P68768|AMPA_ECO57 Cytosol aminopeptidase OS=Escherichia coli ... 30 8.3
sp|A7ZVE0|AMPA_ECO24 Probable cytosol aminopeptidase OS=Escheric... 30 8.3
sp|Q89AG2|AMPA_BUCBP Probable cytosol aminopeptidase OS=Buchnera... 30 8.3

>sp|P03518|VGLM_RVFV Envelope glycoprotein OS=Rift valley fever
virus GN=M PE=3 SV=2
Length = 1206

Score = 33.5 bits (75), Expect = 0.58
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Frame = -3

Query: 463 ITFAISSFHAFLSATALGLQKPLKILPPFSLHRPVIVIWPLLRWLFSSTLMLRSHSV--- 293
+ F SS A + K LKI P L+ P++ I +RW++ + +H++
Sbjct: 588 VVFVFSSIAIICLAVLYRVLKCLKIAPRKVLN-PLMWITAFIRWIYKKMVARVAHNINQV 646

Query: 292 -------DSPALSRGNPSAIYRLPLHA-IPLLPTYLTTRLSCSLAPRLSPI 164
+ L GNP+ I P HA IP TYL L S A S +
Sbjct: 647 NREIGWMEGGQLVLGNPAPI---PRHAPIPRYSTYLMLLLIVSYASACSEL 694


>sp|Q9LFA6|BGAL2_ARATH Beta-galactosidase 2 OS=Arabidopsis thaliana
GN=BGAL2 PE=2 SV=1
Length = 727

Score = 30.8 bits (68), Expect = 3.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2

Query: 392 NSATLFIASPCHSDLASTTLAILKHTHVALPLGGQPRFVEGEPIGHL*TTP 240
N A + +A C S L +T A++ + H AL + GQ R + I + +TP
Sbjct: 7 NKAWIILAILCFSSLIHSTEAVVTYDHKALIINGQRRILISGSIHYPRSTP 57


>sp|Q7V872|PCBA_PROMM Divinyl chlorophyll a/b light-harvesting
protein pcbA OS=Prochlorococcus marinus (strain MIT
9313) GN=pcbA PE=2 SV=1
Length = 368

Score = 30.4 bits (67), Expect = 4.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3

Query: 144 DVQQSWYIGLSRGANEQLRRVVRYVGNSGIACRGS 248
DV +WY G S N R + ++G++G+ C G+
Sbjct: 8 DVTYAWYAGNSGVTNRSGRFIASHIGHTGLICFGA 42


>sp|Q86W25|NAL13_HUMAN NACHT, LRR and PYD domains-containing protein
13 OS=Homo sapiens GN=NLRP13 PE=1 SV=2
Length = 1043

Score = 30.4 bits (67), Expect = 4.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3

Query: 484 LSQCGACITFAISSFHAFLSATALGLQKPLKILPPFS 374
++ CG C TF SF F +A + L++P + PP S
Sbjct: 525 INDCGGCTTFTHLSFQEFFAAMSFVLEEP-REFPPHS 560


>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota
GN=PSKR PE=1 SV=1
Length = 1021

Score = 30.0 bits (66), Expect = 6.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2

Query: 107 GIKYSLPASHPLVICLVEGESNGHLWPTF 21
G++Y+ P+S P +I L NG +WP F
Sbjct: 525 GLQYNQPSSFPPMIDLSYNSLNGSIWPEF 553


>sp|Q3YU89|AMPA_SHISS Probable cytosol aminopeptidase OS=Shigella
sonnei (strain Ss046) GN=pepA PE=3 SV=1
Length = 503

Score = 29.6 bits (65), Expect = 8.3
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3

Query: 129 DQMVGDVQQSWYIGLSRGA-NEQLRRVVRYVGNSGIACRGSL*MADGFPLDKAGLSTEWE 305
+Q + ++ Y+ + +G+ NE L V+ Y GN+ R + + G D G+S +
Sbjct: 225 EQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPS 284

Query: 306 RNMSVLE 326
M ++
Sbjct: 285 EGMDEMK 291


>sp|Q83P64|AMPA_SHIFL Probable cytosol aminopeptidase OS=Shigella
flexneri GN=pepA PE=3 SV=1
Length = 503

Score = 29.6 bits (65), Expect = 8.3
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3

Query: 129 DQMVGDVQQSWYIGLSRGA-NEQLRRVVRYVGNSGIACRGSL*MADGFPLDKAGLSTEWE 305
+Q + ++ Y+ + +G+ NE L V+ Y GN+ R + + G D G+S +
Sbjct: 225 EQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPS 284

Query: 306 RNMSVLE 326
M ++
Sbjct: 285 EGMDEMK 291


>sp|Q0SXK0|AMPA_SHIF8 Probable cytosol aminopeptidase OS=Shigella
flexneri serotype 5b (strain 8401) GN=pepA PE=3 SV=1
Length = 503

Score = 29.6 bits (65), Expect = 8.3
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3

Query: 129 DQMVGDVQQSWYIGLSRGA-NEQLRRVVRYVGNSGIACRGSL*MADGFPLDKAGLSTEWE 305
+Q + ++ Y+ + +G+ NE L V+ Y GN+ R + + G D G+S +
Sbjct: 225 EQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPS 284

Query: 306 RNMSVLE 326
M ++
Sbjct: 285 EGMDEMK 291


>sp|Q328S1|AMPA_SHIDS Probable cytosol aminopeptidase OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=pepA PE=3 SV=1
Length = 503

Score = 29.6 bits (65), Expect = 8.3
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3

Query: 129 DQMVGDVQQSWYIGLSRGA-NEQLRRVVRYVGNSGIACRGSL*MADGFPLDKAGLSTEWE 305
+Q + ++ Y+ + +G+ NE L V+ Y GN+ R + + G D G+S +
Sbjct: 225 EQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPS 284

Query: 306 RNMSVLE 326
M ++
Sbjct: 285 EGMDEMK 291


>sp|Q31TK2|AMPA_SHIBS Probable cytosol aminopeptidase OS=Shigella
boydii serotype 4 (strain Sb227) GN=pepA PE=3 SV=1
Length = 503

Score = 29.6 bits (65), Expect = 8.3
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3

Query: 129 DQMVGDVQQSWYIGLSRGA-NEQLRRVVRYVGNSGIACRGSL*MADGFPLDKAGLSTEWE 305
+Q + ++ Y+ + +G+ NE L V+ Y GN+ R + + G D G+S +
Sbjct: 225 EQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPS 284

Query: 306 RNMSVLE 326
M ++
Sbjct: 285 EGMDEMK 291


tr_hit_id A4Y6V4
Definition tr|A4Y6V4|A4Y6V4_SHEPC Bile acid:sodium symporter OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
Align length 92
Score (bit) 36.2
E-value 0.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915836|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_F11.
(504 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A4Y6V4|A4Y6V4_SHEPC Bile acid:sodium symporter OS=Shewanella ... 36 0.90
tr|Q2KB76|Q2KB76_RHIEC Hypothetical conserved protein OS=Rhizobi... 34 4.5
tr|B5Y4K5|B5Y4K5_PHATR Predicted protein OS=Phaeodactylum tricor... 34 4.5
tr|Q1MCB3|Q1MCB3_RHIL3 Putative uncharacterized protein OS=Rhizo... 33 5.8
tr|A3XJS4|A3XJS4_9FLAO Pseudouridine synthase OS=Leeuwenhoekiell... 33 5.8
tr|A8L3M4|A8L3M4_FRASN Acyltransferase 3 OS=Frankia sp. (strain ... 33 9.9
tr|Q1ZF07|Q1ZF07_9GAMM Pseudouridine synthase OS=Psychromonas sp... 33 9.9

>tr|A4Y6V4|A4Y6V4_SHEPC Bile acid:sodium symporter OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453)
GN=Sputcn32_1965 PE=4 SV=1
Length = 322

Score = 36.2 bits (82), Expect = 0.90
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Frame = -3

Query: 421 TALGLQKPLKILPPFSLHRPVIVIWPLLRWLFSSTLMLRSHSVDSPALSRGNPSAIYRLP 242
TA+G LK++P ++ VI PLL W+ + L L + + + A S G +++ LP
Sbjct: 224 TAIGAT--LKVIP---VYVAFAVIAPLLGWIVARLLRLEAAAGRAVAFSAGTRNSLVILP 278

Query: 241 L-----HAIPLLPTYLTTRLSCSLAPRLSPIY 161
L AIP+LP + T+ L L I+
Sbjct: 279 LALAVPGAIPVLPAIIVTQTMVELLSELIYIH 310


>tr|Q2KB76|Q2KB76_RHIEC Hypothetical conserved protein OS=Rhizobium
etli (strain CFN 42 / ATCC 51251) GN=RHE_CH01103 PE=4
SV=1
Length = 334

Score = 33.9 bits (76), Expect = 4.5
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +3

Query: 129 DQMVGDVQQSWYIGLSRGANEQLRRVVRYVGNSGIACRGSL*MADGFPLD--KAGLSTEW 302
+Q + D Q +GL+R AN+Q +V +G++ G++ D + D ++G + +W
Sbjct: 79 NQAIYDQTQQTQLGLARLANDQTAKVSGILGSNVDLSAGNV---DKYVNDHWQSGFNNQW 135

Query: 303 ERNMSVLENSQRSRG 347
+R+ + LE S +G
Sbjct: 136 DRDQASLEQSLADKG 150


>tr|B5Y4K5|B5Y4K5_PHATR Predicted protein OS=Phaeodactylum
tricornutum CCAP 1055/1 GN=PHATR_43865 PE=4 SV=1
Length = 1224

Score = 33.9 bits (76), Expect = 4.5
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = -3

Query: 481 SQCGACITFAISSFHAFLSATALGLQKPLKILPPFSLHRPVIVIWPLLRWLFSSTLMLRS 302
SQ A +++S L+A+ Q P+K P SL+R +W W ++ L+L
Sbjct: 251 SQSNATDAYSLSIALNALTASVTDDQAPVKPEPLPSLYRSRFAVWQSTCWQWNEALILLG 310

Query: 301 HSVDSPALSRGNPSAIYRL 245
H +++ ++ SA+ +L
Sbjct: 311 HGLETNKVNNPVVSALLQL 329


>tr|Q1MCB3|Q1MCB3_RHIL3 Putative uncharacterized protein
OS=Rhizobium leguminosarum bv. viciae (strain 3841)
GN=RL3928 PE=4 SV=1
Length = 335

Score = 33.5 bits (75), Expect = 5.8
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = +3

Query: 129 DQMVGDVQQSWYIGLSRGANEQLRRVVRYVGNSGIACRGSL*MADGFPLD--KAGLSTEW 302
+Q + D Q +GLS+ ANEQ ++ +G + G++ D + D + G + +W
Sbjct: 79 NQAIYDQTQQTQLGLSKLANEQTGKISGILGTNVDLSAGNV---DKYANDHWQGGFNNQW 135

Query: 303 ERNMSVLENSQRSRGQITMTGRCNEKGGRIFS 398
+R+ + L+ S +G I+M R FS
Sbjct: 136 DRDQASLDQSLADKG-ISMGSEAYNNALRDFS 166


>tr|A3XJS4|A3XJS4_9FLAO Pseudouridine synthase OS=Leeuwenhoekiella
blandensis MED217 GN=MED217_04192 PE=3 SV=1
Length = 265

Score = 33.5 bits (75), Expect = 5.8
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3

Query: 51 PLDEADYKRMRGG*TVLDTIPCS*EHDQMVGDVQQSWYIGLSRGANEQLRRVVRYV 218
P+D + KRM G +LDTI E +Q+ ++ + I L++G N Q+RR+ Y+
Sbjct: 144 PIDASFVKRMSDGIPILDTITRKCEVEQL---GKKRFKIILTQGLNRQIRRMCEYL 196


>tr|A8L3M4|A8L3M4_FRASN Acyltransferase 3 OS=Frankia sp. (strain
EAN1pec) GN=Franean1_6950 PE=4 SV=1
Length = 478

Score = 32.7 bits (73), Expect = 9.9
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = -3

Query: 379 FSLHRPVIVIWPLLRWLFSSTLMLRSHSVDSPALSRGNPSAIYRLPLHAIPLLPTYLTTR 200
F+ H VI+ +PLLR +F+ ++ P P+A+ P A+P +P LT+
Sbjct: 354 FATHHLVILRFPLLRRIFNGRFPSKARPGSEP------PAAVPAAPSVAVPAVPPVLTST 407

Query: 199 LSCSLAPRLSP 167
A R P
Sbjct: 408 RGGCAAGRARP 418


>tr|Q1ZF07|Q1ZF07_9GAMM Pseudouridine synthase OS=Psychromonas sp.
CNPT3 GN=PCNPT3_09611 PE=3 SV=1
Length = 292

Score = 32.7 bits (73), Expect = 9.9
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Frame = +3

Query: 36 MAVGFPLDEADYKRMRGG*TVLDTI--PCS*EHDQMVGDVQQSWYIG--LSRGANEQLRR 203
+ V PL E +RM+ G +LDTI PC + VQ + L++G N Q+RR
Sbjct: 141 VTVDKPLSERFVERMQRGVPILDTITKPC-------IVKVQSRFVFSIILTQGLNRQIRR 193

Query: 204 VVRYVGNSGIACRGSL*MADGFPLDKAGLSTEWERNMSVLE 326
+ Y+G A + + M K G +W RN+SV E
Sbjct: 194 MCEYLGYEVQALQRTRIMQVTLKNLKPG---QW-RNLSVQE 230