BP915850
Clone id YMU001_000077_H05
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000077_H05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CGGAGTTGGGTGGTATGGTGCAAGGCTACTAAATACATAAATAGGATGCCTTAGAGTCGG
ATATGTGTATACTCTCAATCTCGTAGCATCACTTTGCAACGCCAGGTACTAAGAAGCACG
CTTAGTTTCTCAGTCCATATTAAGCGTGATTGGGTTCCTATTGGACTTGTTAAGCACGCT
GAGGATAATGGTCCAAAGAAGCAATTTTATCTCCTTTAGACTTTTCGAAGTAGCGGAAGG
GCCGAAAAGGGCAAATGATTCCGTGAAGGACACGTCCAAGCCGAAGAAAGTCATGAAGCC
ATCATTCTTTGGAGTGTGCACCTTGATGGTAGAGATCTTTCACATAGTAAATTTATTCAG
CTGGAATAAGGTTGAAGATGGCCTCTTGATGCAGACCAAGGTTGTTTCCGTACGTACGTA
CGGTATGGTTCCGTACCGTACGGTATCCGTACGCACCGTACGATTCCGTACGTACACCCA
AAAA
■■Homology search results ■■ -
sp_hit_id Q6UXN2
Definition sp|Q6UXN2|TRML4_HUMAN Trem-like transcript 4 protein OS=Homo sapiens
Align length 81
Score (bit) 32.7
E-value 0.89
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915850|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_H05.
(484 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6UXN2|TRML4_HUMAN Trem-like transcript 4 protein OS=Homo sap... 33 0.89
sp|P47898|5HT5A_HUMAN 5-hydroxytryptamine receptor 5A OS=Homo sa... 31 2.6
sp|P20636|ETF2_VACCW Early transcription factor 82 kDa subunit O... 30 7.5
sp|Q9JF93|ETF2_VACCT Early transcription factor 82 kDa subunit O... 30 7.5
sp|P20635|ETF2_VACCC Early transcription factor 82 kDa subunit O... 30 7.5
sp|O57220|ETF2_VACCA Early transcription factor 82 kDa subunit O... 30 7.5
sp|P30957|RYR2_RABIT Ryanodine receptor 2 OS=Oryctolagus cunicul... 29 9.8
sp|P33806|ETF2_VARV Early transcription factor 82 kDa subunit OS... 29 9.8

>sp|Q6UXN2|TRML4_HUMAN Trem-like transcript 4 protein OS=Homo
sapiens GN=TREML4 PE=2 SV=1
Length = 200

Score = 32.7 bits (73), Expect = 0.89
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = -3

Query: 476 CTYGIVRCVRIPYGT-------EPYRTYVRKQPWSASRGHLQPYSS*INLLCERSLPSRC 318
C + + C P G P +T + + +S RG QP S C+++ PSRC
Sbjct: 9 CCFHLCCCCSWPQGAVPEELHKHPGQTLLLQCQYSPKRGPYQPKS-----WCQQTSPSRC 63

Query: 317 TLQRMMAS*LSSAWTCPSRNH 255
TL ++ S S WT ++H
Sbjct: 64 TL--LVTS--SKPWTAVQKSH 80


>sp|P47898|5HT5A_HUMAN 5-hydroxytryptamine receptor 5A OS=Homo
sapiens GN=HTR5A PE=2 SV=1
Length = 357

Score = 31.2 bits (69), Expect = 2.6
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +2

Query: 203 NFISFRLFEVAEGPKRANDSV-KDTSKPKKVMKPSFFGVCTLMVEIFHIVNLFSWNKVED 379
N SF L P N S+ KD +P + S FGV L + F + F+WN
Sbjct: 6 NLTSFSLS--TPSPLETNHSLGKDDLRPSSPLL-SVFGVLILTLLGFLVAATFAWN---- 58

Query: 380 GLLMQTKVVSVRTYGMVPY 436
LL+ ++ VRT+ VP+
Sbjct: 59 -LLVLATILRVRTFHRVPH 76


>sp|P20636|ETF2_VACCW Early transcription factor 82 kDa subunit
OS=Vaccinia virus (strain Western Reserve) GN=VETFL PE=1
SV=3
Length = 710

Score = 29.6 bits (65), Expect = 7.5
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = -2

Query: 327 IKVHTPKNDGFMTFFGLDVSFTESFALFGPSATSKSLKEIKLLLWTIILSVLNKSNRNPI 148
+K H P + + TF + ++ A+F S +++ + W+ I NR PI
Sbjct: 329 VKNHIPNIEKYFTFLVIAIN-----AMFNSVQKSADFTKVETVYWSRICQNTKNKNRKPI 383

Query: 147 TLN 139
+N
Sbjct: 384 IIN 386


>sp|Q9JF93|ETF2_VACCT Early transcription factor 82 kDa subunit
OS=Vaccinia virus (strain Tian Tan) GN=VETFL PE=3 SV=1
Length = 710

Score = 29.6 bits (65), Expect = 7.5
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = -2

Query: 327 IKVHTPKNDGFMTFFGLDVSFTESFALFGPSATSKSLKEIKLLLWTIILSVLNKSNRNPI 148
+K H P + + TF + ++ A+F S +++ + W+ I NR PI
Sbjct: 329 VKNHIPNIEKYFTFLVIAIN-----AMFNSVQKSADFTKVETVYWSRICQNTKNKNRKPI 383

Query: 147 TLN 139
+N
Sbjct: 384 IIN 386


>sp|P20635|ETF2_VACCC Early transcription factor 82 kDa subunit
OS=Vaccinia virus (strain Copenhagen) GN=VETFL PE=3 SV=1
Length = 710

Score = 29.6 bits (65), Expect = 7.5
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = -2

Query: 327 IKVHTPKNDGFMTFFGLDVSFTESFALFGPSATSKSLKEIKLLLWTIILSVLNKSNRNPI 148
+K H P + + TF + ++ A+F S +++ + W+ I NR PI
Sbjct: 329 VKNHIPNIEKYFTFLVIAIN-----AMFNSVQKSADFTKVETVYWSRICQNTKNKNRKPI 383

Query: 147 TLN 139
+N
Sbjct: 384 IIN 386


>sp|O57220|ETF2_VACCA Early transcription factor 82 kDa subunit
OS=Vaccinia virus (strain Ankara) GN=VETFL PE=3 SV=1
Length = 710

Score = 29.6 bits (65), Expect = 7.5
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = -2

Query: 327 IKVHTPKNDGFMTFFGLDVSFTESFALFGPSATSKSLKEIKLLLWTIILSVLNKSNRNPI 148
+K H P + + TF + ++ A+F S +++ + W+ I NR PI
Sbjct: 329 VKNHIPNIEKYFTFLVIAIN-----AMFNSVQKSADFTKVETVYWSRICQNTKNKNRKPI 383

Query: 147 TLN 139
+N
Sbjct: 384 IIN 386


>sp|P30957|RYR2_RABIT Ryanodine receptor 2 OS=Oryctolagus cuniculus
GN=RYR2 PE=1 SV=2
Length = 4967

Score = 29.3 bits (64), Expect = 9.8
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Frame = +2

Query: 158 LLDLLSTLRIMVQRSNFISFRLFEVAEGPKRANDSV--KDTSKPKKVMKPSFFGVCTLM- 328
+LD+ + L + Q+S FI R + + E P+R+ +V K SK +K + F + L
Sbjct: 3550 VLDIANVLFHLEQKSKFIGRRYYNLVEHPQRSKKAVWHKLLSKQRKRAVVACFRMAPLYN 3609

Query: 329 VEIFHIVNLF------SWNKVED 379
+ VNLF SW + E+
Sbjct: 3610 LPRHRAVNLFLQGYEKSWIETEE 3632


>sp|P33806|ETF2_VARV Early transcription factor 82 kDa subunit
OS=Variola virus GN=VETFL PE=3 SV=1
Length = 710

Score = 29.3 bits (64), Expect = 9.8
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -2

Query: 327 IKVHTPKNDGFMTFFGLDVSFTESFALFGPSATSKSLKEIKLLLWTIILSVLNKSNRNPI 148
+K H P + + TF + ++ A+F S +++ + W+ I NR P+
Sbjct: 329 VKNHIPNIEKYFTFLVIAIN-----AMFNSVQKSADFTKVETVYWSRICQNTKNKNRKPV 383

Query: 147 TLN 139
+N
Sbjct: 384 IIN 386


tr_hit_id A0DIY0
Definition tr|A0DIY0|A0DIY0_PARTE Chromosome undetermined scaffold_52, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 105
Score (bit) 36.2
E-value 0.82
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915850|Adiantum capillus-veneris mRNA, clone:
YMU001_000077_H05.
(484 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0DIY0|A0DIY0_PARTE Chromosome undetermined scaffold_52, whol... 36 0.82
tr|A6DFX4|A6DFX4_9BACT HEAT OS=Lentisphaera araneosa HTCC2155 GN... 33 7.0
tr|B7ZL92|B7ZL92_HUMAN Triggering receptor expressed on myeloid ... 33 9.2
tr|A6NK24|A6NK24_HUMAN Putative uncharacterized protein TREML4 O... 33 9.2

>tr|A0DIY0|A0DIY0_PARTE Chromosome undetermined scaffold_52, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00017354001 PE=4 SV=1
Length = 675

Score = 36.2 bits (82), Expect = 0.82
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Frame = +2

Query: 125 VSQSILSVIGFLLDLLSTLRI----MVQRSNFISFRLFEVAEGPKRANDSVKDTSKPKKV 292
V S+L I +L L S L I V+ +N I L+E P D +K T +
Sbjct: 143 VQTSVLREISYLKSLKSHLNIASIVQVKITNHIVSILYEYY--PLNLRDQLKQTELSIEQ 200

Query: 293 MKPSFFGVCTLMVEIFHIVNLFSWNKVEDGLLMQTKVVSVRTYGM 427
+K F +C VE H ++ N D + + KVV + +GM
Sbjct: 201 IKSLFLQICQ-GVEYLHQNHILHRNLKPDNIFINNKVVKISDFGM 244


>tr|A6DFX4|A6DFX4_9BACT HEAT OS=Lentisphaera araneosa HTCC2155
GN=LNTAR_18178 PE=4 SV=1
Length = 366

Score = 33.1 bits (74), Expect = 7.0
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -2

Query: 186 ILSVLNKSNRNPITLNMD*ETKRAS*YLALQSDATRLRVYTYPTLRH 46
+L K+N ++LN D K AS L SD L++++YP++ H
Sbjct: 211 VLKSFVKANYQKVSLNCDKMLKHASRNLLKSSDKDILKIFSYPSIEH 257


>tr|B7ZL92|B7ZL92_HUMAN Triggering receptor expressed on myeloid
cells-like 4 OS=Homo sapiens GN=TREML4 PE=2 SV=1
Length = 200

Score = 32.7 bits (73), Expect = 9.2
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = -3

Query: 476 CTYGIVRCVRIPYGT-------EPYRTYVRKQPWSASRGHLQPYSS*INLLCERSLPSRC 318
C + + C P G P +T + + +S RG QP S C+++ PSRC
Sbjct: 9 CCFHLCCCCSWPQGAVPEELHKHPGQTLLLQCQYSPKRGPYQPKS-----WCQQTSPSRC 63

Query: 317 TLQRMMAS*LSSAWTCPSRNH 255
TL ++ S S WT ++H
Sbjct: 64 TL--LVTS--SKPWTAVQKSH 80


>tr|A6NK24|A6NK24_HUMAN Putative uncharacterized protein TREML4
OS=Homo sapiens GN=TREML4 PE=4 SV=2
Length = 199

Score = 32.7 bits (73), Expect = 9.2
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = -3

Query: 476 CTYGIVRCVRIPYGT-------EPYRTYVRKQPWSASRGHLQPYSS*INLLCERSLPSRC 318
C + + C P G P +T + + +S RG QP S C+++ PSRC
Sbjct: 9 CCFHLCCCCSWPQGAVPEELHKHPGQTLLLQCQYSPKRGPYQPKS-----WCQQTSPSRC 63

Query: 317 TLQRMMAS*LSSAWTCPSRNH 255
TL ++ S S WT ++H
Sbjct: 64 TL--LVTS--SKPWTAVQKSH 80