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NBDC - LSDB Archive
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BP915855
Clone id YMU001_000078_B05
Library
Length 277
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000078_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACAGAAAACTATTTATTTCAAAAATGAGTACCAACTCATACACCTTTACATCAGCTTGTT
ACTCTGCTGGTTATTAGAAAAATGCCTCACAACTTCTAAAAAGTATTACGTGCGTTTTGT
TTCAATGGCGTCTGAGCGATACGTTGTGATCTCATGCTGCTTAAAATACCGCCTTCCTTC
TTCATCTATAAGAACAAGGTTCAAGAAGTAATGGACACTGAACTTATTGTTCACAGTTTT
GTAAGTCGGTGTCAGCTCATAAGGGCTCAGAAAGAGT
■■Homology search results ■■ -
sp_hit_id Q9T091
Definition sp|Q9T091|VPS26_ARATH Vacuolar protein sorting-associated protein 26 OS=Arabidopsis thaliana
Align length 47
Score (bit) 80.5
E-value 2.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915855|Adiantum capillus-veneris mRNA, clone:
YMU001_000078_B05.
         (277 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9T091|VPS26_ARATH Vacuolar protein sorting-associated protei...    80   2e-15
sp|Q6DH23|V26BB_DANRE Vacuolar protein sorting-associated protei...    73   4e-13
sp|Q7ZV03|V26BA_DANRE Vacuolar protein sorting-associated protei...    72   7e-13
sp|Q6DFB9|V26BB_XENLA Vacuolar protein sorting-associated protei...    72   9e-13
sp|Q68F29|V26BA_XENLA Vacuolar protein sorting-associated protei...    72   9e-13
sp|Q55CA0|VPS26_DICDI Vacuolar protein sorting-associated protei...    72   1e-12
sp|Q5BKM4|VP26B_XENTR Vacuolar protein sorting-associated protei...    72   1e-12
sp|Q5R436|VP26B_PONAB Vacuolar protein sorting-associated protei...    72   1e-12
sp|Q8C0E2|VP26B_MOUSE Vacuolar protein sorting-associated protei...    72   1e-12
sp|Q4G0F5|VP26B_HUMAN Vacuolar protein sorting-associated protei...    72   1e-12
sp|Q6TNP8|VP26A_DANRE Vacuolar protein sorting-associated protei...    71   1e-12
sp|Q28HT6|VP26A_XENTR Vacuolar protein sorting-associated protei...    68   1e-11
sp|Q6AY86|VP26A_RAT Vacuolar protein sorting-associated protein ...    68   1e-11
sp|P40336|VP26A_MOUSE Vacuolar protein sorting-associated protei...    68   1e-11
sp|O75436|VP26A_HUMAN Vacuolar protein sorting-associated protei...    68   1e-11
sp|Q0VD53|VP26A_BOVIN Vacuolar protein sorting-associated protei...    68   1e-11
sp|Q6IRD0|V26AA_XENLA Vacuolar protein sorting-associated protei...    68   1e-11
sp|Q8I4T1|VPS26_PLAF7 Vacuolar protein sorting-associated protei...    68   2e-11
sp|Q10243|VPS26_SCHPO Vacuolar protein sorting-associated protei...    67   2e-11
sp|Q9W552|VPS26_DROME Vacuolar protein sorting-associated protei...    67   2e-11
sp|Q6DFU4|V26AB_XENLA Vacuolar protein sorting-associated protei...    67   2e-11
sp|O01258|VPS26_CAEEL Vacuolar protein sorting-associated protei...    67   4e-11
sp|P40335|VPS26_YEAST Vacuolar protein sorting-associated protei...    57   2e-08
sp|Q6FWS2|ESF2_CANGA Pre-rRNA-processing protein ESF2 OS=Candida...    30   2.9  

>sp|Q9T091|VPS26_ARATH Vacuolar protein sorting-associated protein
           26 OS=Arabidopsis thaliana GN=At4g27690 PE=2 SV=2
          Length = 303

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 35/47 (74%), Positives = 42/47 (89%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYR 136
           LFL+PY+LTPT++ +NNKFSV Y+LNLVL+DEE RRYFKQ EIT YR
Sbjct: 250 LFLAPYDLTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITLYR 296


>sp|Q6DH23|V26BB_DANRE Vacuolar protein sorting-associated protein
           26B-B OS=Danio rerio GN=vps26bb PE=2 SV=1
          Length = 329

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 34/54 (62%), Positives = 41/54 (75%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYRSDAIETK 115
           LFL+ YE+TPT + +N KFSV Y+LNLVLIDEE RRYFKQ EIT +R   +  K
Sbjct: 248 LFLAGYEMTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEITLWREGDVARK 301


>sp|Q7ZV03|V26BA_DANRE Vacuolar protein sorting-associated protein
           26B-A OS=Danio rerio GN=vps26ba PE=2 SV=1
          Length = 331

 Score = 72.4 bits (176), Expect = 7e-13
 Identities = 34/51 (66%), Positives = 40/51 (78%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYRSDAI 124
           LFL+ YE+TPT + +N KFSV Y+LNLVLIDEE RRYFKQ EIT +R   I
Sbjct: 248 LFLAGYEMTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEITLWRKGDI 298


>sp|Q6DFB9|V26BB_XENLA Vacuolar protein sorting-associated protein
           26B-B OS=Xenopus laevis GN=vps26b-B PE=2 SV=1
          Length = 337

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 35/54 (64%), Positives = 40/54 (74%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYRSDAIETK 115
           LFL+ YELTPT + +N KFSV Y+LNLVLIDEE RRYFKQ EI  +R   I  K
Sbjct: 248 LFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEIVLWRKGDIVRK 301


>sp|Q68F29|V26BA_XENLA Vacuolar protein sorting-associated protein
           26B-A OS=Xenopus laevis GN=vps26b-A PE=2 SV=1
          Length = 337

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 35/54 (64%), Positives = 40/54 (74%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYRSDAIETK 115
           LFL+ YELTPT + +N KFSV Y+LNLVLIDEE RRYFKQ EI  +R   I  K
Sbjct: 248 LFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEIVLWRKGDIVRK 301


>sp|Q55CA0|VPS26_DICDI Vacuolar protein sorting-associated protein
           26 OS=Dictyostelium discoideum GN=vps26 PE=2 SV=1
          Length = 349

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 31/47 (65%), Positives = 41/47 (87%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYR 136
           LFLS ++LTPTY++V+NKFSV YFLNL L+DE+ ++YFKQ EIT +R
Sbjct: 251 LFLSVFDLTPTYRSVHNKFSVKYFLNLALVDEDDKKYFKQQEITLWR 297


>sp|Q5BKM4|VP26B_XENTR Vacuolar protein sorting-associated protein
           26B OS=Xenopus tropicalis GN=vps26b PE=2 SV=1
          Length = 337

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 34/54 (62%), Positives = 40/54 (74%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYRSDAIETK 115
           LFL+ YELTPT + +N KFSV Y+LNLVLIDEE RRYFKQ E+  +R   I  K
Sbjct: 248 LFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWRKGDIVRK 301


>sp|Q5R436|VP26B_PONAB Vacuolar protein sorting-associated protein
           26B OS=Pongo abelii GN=VPS26B PE=2 SV=1
          Length = 336

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 34/54 (62%), Positives = 40/54 (74%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYRSDAIETK 115
           LFL+ YELTPT + +N KFSV Y+LNLVLIDEE RRYFKQ E+  +R   I  K
Sbjct: 248 LFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWRKGDIVRK 301


>sp|Q8C0E2|VP26B_MOUSE Vacuolar protein sorting-associated protein
           26B OS=Mus musculus GN=Vps26b PE=1 SV=1
          Length = 336

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 34/54 (62%), Positives = 40/54 (74%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYRSDAIETK 115
           LFL+ YELTPT + +N KFSV Y+LNLVLIDEE RRYFKQ E+  +R   I  K
Sbjct: 248 LFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWRKGDIVRK 301


>sp|Q4G0F5|VP26B_HUMAN Vacuolar protein sorting-associated protein
           26B OS=Homo sapiens GN=VPS26B PE=1 SV=2
          Length = 336

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 34/54 (62%), Positives = 40/54 (74%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYRSDAIETK 115
           LFL+ YELTPT + +N KFSV Y+LNLVLIDEE RRYFKQ E+  +R   I  K
Sbjct: 248 LFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWRKGDIVRK 301
tr_hit_id A9TKW8
Definition tr|A9TKW8|A9TKW8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 49
Score (bit) 87.4
E-value 3.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915855|Adiantum capillus-veneris mRNA, clone:
YMU001_000078_B05.
         (277 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TKW8|A9TKW8_PHYPA Predicted protein OS=Physcomitrella paten...    87   3e-16
tr|A9PIL1|A9PIL1_POPJC Putative uncharacterized protein OS=Popul...    85   2e-15
tr|A9PFI4|A9PFI4_POPTR Putative uncharacterized protein OS=Popul...    85   2e-15
tr|A7PG22|A7PG22_VITVI Chromosome chr6 scaffold_15, whole genome...    85   2e-15
tr|A9TQ87|A9TQ87_PHYPA Predicted protein OS=Physcomitrella paten...    85   2e-15
tr|A9T458|A9T458_PHYPA Predicted protein OS=Physcomitrella paten...    85   2e-15
tr|B6UEZ8|B6UEZ8_MAIZE Vacuolar protein sorting 26 OS=Zea mays P...    84   4e-15
tr|B4FF26|B4FF26_MAIZE Putative uncharacterized protein OS=Zea m...    84   4e-15
tr|B4FT16|B4FT16_MAIZE Putative uncharacterized protein OS=Zea m...    84   5e-15
tr|A9P2P3|A9P2P3_PICSI Putative uncharacterized protein OS=Picea...    84   5e-15
tr|Q3HRZ1|Q3HRZ1_SOLTU Vacuolar protein sorting-associated prote...    83   6e-15
tr|A7QEY8|A7QEY8_VITVI Chromosome chr16 scaffold_86, whole genom...    83   6e-15
tr|A9PCL0|A9PCL0_POPTR Putative uncharacterized protein OS=Popul...    83   8e-15
tr|Q2R0X0|Q2R0X0_ORYSJ Os11g0629200 protein OS=Oryza sativa subs...    82   1e-14
tr|B8BLF9|B8BLF9_ORYSI Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|A8J4X1|A8J4X1_CHLRE Subunit of retromer complex OS=Chlamydomo...    82   1e-14
tr|Q2QQB3|Q2QQB3_ORYSJ Os12g0500700 protein OS=Oryza sativa subs...    82   1e-14
tr|A2ZKS5|A2ZKS5_ORYSI Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|Q01BH4|Q01BH4_OSTTA Similarity to embryogenesis protein H bet...    82   2e-14
tr|A4RVI7|A4RVI7_OSTLU Predicted protein OS=Ostreococcus lucimar...    81   2e-14
tr|Q9FJD0|Q9FJD0_ARATH Vacuolar sorting protein-like; embryogene...    80   4e-14
tr|Q2V3E3|Q2V3E3_ARATH Uncharacterized protein At4g27690.2 OS=Ar...    80   4e-14
tr|A7S1T2|A7S1T2_NEMVE Predicted protein OS=Nematostella vectens...    75   2e-12
tr|B5X1R6|B5X1R6_SALSA Vacuolar protein sorting-associated prote...    73   8e-12
tr|Q4P0S1|Q4P0S1_USTMA Putative uncharacterized protein OS=Ustil...    73   8e-12
tr|Q4RRS7|Q4RRS7_TETNG Chromosome 16 SCAF15002, whole genome sho...    72   1e-11
tr|B6KCB6|B6KCB6_TOXGO Vacuolar protein sorting 26, putative OS=...    72   1e-11
tr|B3RKP8|B3RKP8_TRIAD Putative uncharacterized protein OS=Trich...    72   1e-11
tr|Q5KHT1|Q5KHT1_CRYNE Protein-Golgi retention-related protein, ...    72   1e-11
tr|Q4S9G3|Q4S9G3_TETNG Chromosome undetermined SCAF14697, whole ...    72   1e-11

>tr|A9TKW8|A9TKW8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_94096 PE=4 SV=1
          Length = 298

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 38/49 (77%), Positives = 45/49 (91%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYRSD 130
           LFLSPY+LTPTY+ +NNKFSV Y+LNLVL+DEEGRRYFKQ EIT YR++
Sbjct: 250 LFLSPYDLTPTYRNINNKFSVKYYLNLVLVDEEGRRYFKQQEITMYRAE 298


>tr|A9PIL1|A9PIL1_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 301

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 38/47 (80%), Positives = 42/47 (89%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYR 136
           LFLSPYELTPTY+ +NNKFSV Y+LNLVL+DEE RRYFKQ EIT YR
Sbjct: 250 LFLSPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITVYR 296


>tr|A9PFI4|A9PFI4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 301

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 38/47 (80%), Positives = 42/47 (89%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYR 136
           LFLSPYELTPTY+ +NNKFSV Y+LNLVL+DEE RRYFKQ EIT YR
Sbjct: 250 LFLSPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITVYR 296


>tr|A7PG22|A7PG22_VITVI Chromosome chr6 scaffold_15, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017341001
           PE=4 SV=1
          Length = 310

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 38/47 (80%), Positives = 42/47 (89%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYR 136
           LFLSPYELTPTY+ +NNKFSV YFLNLVL+D+E RRYFKQ EIT YR
Sbjct: 259 LFLSPYELTPTYRNINNKFSVKYFLNLVLVDDEDRRYFKQQEITVYR 305


>tr|A9TQ87|A9TQ87_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_224380 PE=4 SV=1
          Length = 298

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYRSD 130
           LFLSPY+LTPTY+ +NNKFSV Y+LNLVL+DEE RRYFKQ EIT YR++
Sbjct: 250 LFLSPYDLTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITMYRAE 298


>tr|A9T458|A9T458_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_218725 PE=4 SV=1
          Length = 298

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYRSD 130
           LFLSPY+LTPTY+ +NNKFSV Y+LNLVL+DEE RRYFKQ EIT YR++
Sbjct: 250 LFLSPYDLTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITMYRAE 298


>tr|B6UEZ8|B6UEZ8_MAIZE Vacuolar protein sorting 26 OS=Zea mays PE=2
           SV=1
          Length = 304

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 36/47 (76%), Positives = 43/47 (91%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYR 136
           LFL+PYELTPT++ +NNKFSV Y+LNLV++DEE RRYFKQHEIT YR
Sbjct: 250 LFLTPYELTPTHRNINNKFSVKYYLNLVIVDEEDRRYFKQHEITMYR 296


>tr|B4FF26|B4FF26_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 304

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 36/47 (76%), Positives = 43/47 (91%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYR 136
           LFL+PYELTPT++ +NNKFSV Y+LNLV++DEE RRYFKQHEIT YR
Sbjct: 250 LFLTPYELTPTHRNINNKFSVKYYLNLVIVDEEDRRYFKQHEITMYR 296


>tr|B4FT16|B4FT16_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 304

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 37/47 (78%), Positives = 42/47 (89%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYR 136
           LFL+PYELTPTY+ +NNKFSV Y+LNLVL+DEE RRYFKQ EIT YR
Sbjct: 250 LFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITMYR 296


>tr|A9P2P3|A9P2P3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 300

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 37/47 (78%), Positives = 42/47 (89%)
 Frame = -2

Query: 276 LFLSPYELTPTYKTVNNKFSVHYFLNLVLIDEEGRRYFKQHEITTYR 136
           LFLSPY+LTPTY+ +NNKFSV Y+LNLVL+DEE RRYFKQ EIT YR
Sbjct: 250 LFLSPYDLTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITMYR 296