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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915859
Clone id YMU001_000078_C11
Library
Length 363
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000078_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAAGAAGGGTAGAGAGGTTCGGCTCACTGGGTGTCGTCTTAGAACTGCAGTTGTGGCAGG
ATCCAGTCAGACTCGCCTCCTTCCCACAGAGTATCTTGTTGTGTTATTGGATGAGGAGCA
AGATGACGATGCTTTGTTACTTGGTGCGAGGTTCTACTCTGACACATTCTCTAATATTCA
CATTGGTTCACTTGAGGCGGGCGCAGAGTACTGCTTCTATGCAAGACTCGAAAAAATTGG
GGAAGTTGAGTTTCACCCACAGTGGAATCACGTGAAACAGCAGACATTATTTCTTACAGA
TCAGAATCACGCTTCTATGCATTTAATTCTCTGGGATGAGCAAGTATCTCTTGCAAGTCT
CTT
■■Homology search results ■■ -
sp_hit_id Q7ZW11
Definition sp|Q7ZW11|TM39B_DANRE Transmembrane protein 39B OS=Danio rerio
Align length 50
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915859|Adiantum capillus-veneris mRNA, clone:
YMU001_000078_C11.
         (363 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7ZW11|TM39B_DANRE Transmembrane protein 39B OS=Danio rerio G...    30   2.9  
sp|P57225|SYT_BUCAI Threonyl-tRNA synthetase OS=Buchnera aphidic...    30   3.8  

>sp|Q7ZW11|TM39B_DANRE Transmembrane protein 39B OS=Danio rerio
           GN=tmem39b PE=2 SV=1
          Length = 491

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 171 LIFTLVHLRRAQSTASMQDSKKLGKLSFTHSGIT*NSRHYFLQIRITLLC 320
           L+FT++ L R    A ++++ + GKLSF HS     +R   L +    LC
Sbjct: 127 LVFTVIVLARRLIAAIVKEASQSGKLSFPHSVFLVTARFAVLTLAGWSLC 176


>sp|P57225|SYT_BUCAI Threonyl-tRNA synthetase OS=Buchnera aphidicola
           subsp. Acyrthosiphon pisum GN=thrS PE=3 SV=1
          Length = 642

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 152 FYSDTFSNIHIGSLEAGAEYCFYARLEKIGEVEFHPQWNHVKQQTLFLT 298
           +Y + +++I IG      ++C Y +L+KIG V +    N+   Q ++ T
Sbjct: 173 YYHENYADIDIGLQVFNIKFCKYFKLQKIGGVYWKKNKNNKMLQRIYGT 221
tr_hit_id A7Q8P9
Definition tr|A7Q8P9|A7Q8P9_VITVI Chromosome chr5 scaffold_64, whole genome shotgun sequence OS=Vitis vinifera
Align length 120
Score (bit) 89.7
E-value 6.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915859|Adiantum capillus-veneris mRNA, clone:
YMU001_000078_C11.
         (363 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q8P9|A7Q8P9_VITVI Chromosome chr5 scaffold_64, whole genome...    90   6e-17
tr|Q9LSP4|Q9LSP4_ARATH Arabidopsis thaliana genomic DNA, chromos...    83   8e-15
tr|Q7Y145|Q7Y145_ORYSJ Os03g0832500 protein OS=Oryza sativa subs...    77   4e-13
tr|B8AMR6|B8AMR6_ORYSI Putative uncharacterized protein OS=Oryza...    77   4e-13
tr|A3APE5|A3APE5_ORYSJ Putative uncharacterized protein OS=Oryza...    77   4e-13
tr|Q1ZAG8|Q1ZAG8_PHOPR Putative permease of ABC transporter OS=P...    34   4.2  
tr|Q6LKQ7|Q6LKQ7_PHOPR Putative permease of ABC transporter OS=P...    33   7.2  
tr|Q4P2M8|Q4P2M8_USTMA Putative uncharacterized protein OS=Ustil...    33   9.3  

>tr|A7Q8P9|A7Q8P9_VITVI Chromosome chr5 scaffold_64, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033135001
           PE=4 SV=1
          Length = 671

 Score = 89.7 bits (221), Expect = 6e-17
 Identities = 48/120 (40%), Positives = 70/120 (58%)
 Frame = +2

Query: 2   KKGREVRLTGCRLRTAVVAGSSQTRLLPTEYXXXXXXXXXXXXXXXXGARFYSDTFSNIH 181
           ++GRE+ LTGC LRTA   GS   RLLPTEY                GA+F SD+FS+I 
Sbjct: 192 RRGREISLTGCYLRTAS-EGSGCPRLLPTEYLVMLLDEDQDDDAMLLGAQFCSDSFSSIS 250

Query: 182 IGSLEAGAEYCFYARLEKIGEVEFHPQWNHVKQQTLFLTDQNHASMHLILWDEQVSLASL 361
           + ++  GA Y  YAR+E IG +E   ++  ++++ + L D +   +  +LW EQV LA+L
Sbjct: 251 LDAVSKGAFYSLYARIESIGSLETQGKFGSIQRKQITLVDNDGVKLKFLLWGEQVLLANL 310


>tr|Q9LSP4|Q9LSP4_ARATH Arabidopsis thaliana genomic DNA, chromosome
           3, TAC clone:K14A17 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 611

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 47/120 (39%), Positives = 66/120 (55%)
 Frame = +2

Query: 2   KKGREVRLTGCRLRTAVVAGSSQTRLLPTEYXXXXXXXXXXXXXXXXGARFYSDTFSNIH 181
           +KGREV +TGC LRTA   G    RLLPTEY                 A+F SDTFS++ 
Sbjct: 196 RKGREVLITGCYLRTAR-EGFGTPRLLPTEYLVVLLDEDQDDDAILIAAQFCSDTFSSVS 254

Query: 182 IGSLEAGAEYCFYARLEKIGEVEFHPQWNHVKQQTLFLTDQNHASMHLILWDEQVSLASL 361
           + +   GA Y  YAR+E IG +E    ++  +++ + L D +   +  ILW EQV +A+L
Sbjct: 255 LDAFNDGASYSLYARIESIGPLESELTFSTARRRQISLVDGDGDRLKFILWGEQVIVANL 314


>tr|Q7Y145|Q7Y145_ORYSJ Os03g0832500 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0078D06.31 PE=4 SV=1
          Length = 647

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 46/120 (38%), Positives = 64/120 (53%)
 Frame = +2

Query: 2   KKGREVRLTGCRLRTAVVAGSSQTRLLPTEYXXXXXXXXXXXXXXXXGARFYSDTFSNIH 181
           KKGREV LTGC LRTA + GS   R+LPTEY                 A+F   +FS++ 
Sbjct: 176 KKGREVMLTGCCLRTA-MEGSGHARILPTEYMVMLLDEEEDEDAMLLAAQFCMYSFSSMM 234

Query: 182 IGSLEAGAEYCFYARLEKIGEVEFHPQWNHVKQQTLFLTDQNHASMHLILWDEQVSLASL 361
           +        Y FYAR+EKI  +E    +   +++ + L D + A +  +LW EQV LA+L
Sbjct: 235 LDENRNNISYSFYARIEKIESLE---PFGSTERKQIVLVDNDDAKIKFVLWGEQVLLANL 291


>tr|B8AMR6|B8AMR6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14191 PE=4 SV=1
          Length = 647

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 46/120 (38%), Positives = 64/120 (53%)
 Frame = +2

Query: 2   KKGREVRLTGCRLRTAVVAGSSQTRLLPTEYXXXXXXXXXXXXXXXXGARFYSDTFSNIH 181
           KKGREV LTGC LRTA + GS   R+LPTEY                 A+F   +FS++ 
Sbjct: 176 KKGREVMLTGCCLRTA-MEGSGHARILPTEYMVMLLDEEEDEDAMLLAAQFCMYSFSSMM 234

Query: 182 IGSLEAGAEYCFYARLEKIGEVEFHPQWNHVKQQTLFLTDQNHASMHLILWDEQVSLASL 361
           +        Y FYAR+EKI  +E    +   +++ + L D + A +  +LW EQV LA+L
Sbjct: 235 LDENRNNISYSFYARIEKIESLE---PFGSTERKQIVLVDNDDAKIKFVLWGEQVLLANL 291


>tr|A3APE5|A3APE5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012667 PE=4 SV=1
          Length = 1028

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 46/120 (38%), Positives = 64/120 (53%)
 Frame = +2

Query: 2   KKGREVRLTGCRLRTAVVAGSSQTRLLPTEYXXXXXXXXXXXXXXXXGARFYSDTFSNIH 181
           KKGREV LTGC LRTA + GS   R+LPTEY                 A+F   +FS++ 
Sbjct: 589 KKGREVMLTGCCLRTA-MEGSGHARILPTEYMVMLLDEEEDEDAMLLAAQFCMYSFSSMM 647

Query: 182 IGSLEAGAEYCFYARLEKIGEVEFHPQWNHVKQQTLFLTDQNHASMHLILWDEQVSLASL 361
           +        Y FYAR+EKI  +E    +   +++ + L D + A +  +LW EQV LA+L
Sbjct: 648 LDENRNNISYSFYARIEKIESLE---PFGSTERKQIVLVDNDDAKIKFVLWGEQVLLANL 704


>tr|Q1ZAG8|Q1ZAG8_PHOPR Putative permease of ABC transporter
           OS=Photobacterium profundum 3TCK GN=P3TCK_04086 PE=3
           SV=1
          Length = 263

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +3

Query: 45  LQLWQDPVRLASFPQSILLCY 107
           LQLWQDP  LA+F +S+LLC+
Sbjct: 56  LQLWQDPRFLAAFGRSLLLCF 76


>tr|Q6LKQ7|Q6LKQ7_PHOPR Putative permease of ABC transporter
           OS=Photobacterium profundum GN=CJ0731 PE=3 SV=1
          Length = 263

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +3

Query: 45  LQLWQDPVRLASFPQSILLCY 107
           LQLWQDP  +A+F +S+LLC+
Sbjct: 56  LQLWQDPRFIAAFGRSLLLCF 76


>tr|Q4P2M8|Q4P2M8_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM05635.1 PE=4 SV=1
          Length = 832

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/45 (40%), Positives = 28/45 (62%)
 Frame = -2

Query: 344 LAHPRELNA*KRDSDL*EIMSAVSRDSTVGETQLPQFFRVLHRSS 210
           LAHP EL+   RD+    I+ A+ RD+T+G+T + +  R+L   S
Sbjct: 274 LAHPSELHV--RDTAATGIVQALDRDATIGKTAVKRLERMLQTPS 316