| BP915861 |
| Clone id |
YMU001_000078_D08 |
| Library |
YMU01 |
| Length |
442 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000078_D08. |
| Accession |
BP915861 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
CGTAACTTCTTGTGCTTCATGAACATTATTGGCAGTAGCCAAATCTGCTCTGTTTTCTGC
TGCCATTGTGTGTGTATGTTGTCTTCGTGTTCGCTTGCTCCTCATAAGGTCACGTACAGA
GTGCTCTGAAAGTCCAGAGGCGGCCTCAGACTGTATTTCTTTTAAATCTTTTTCAGGAGC
TATTGGCATGCCCTCATGAAGAATTCCAACCCCATGGTTCTCCTGGCCAGTTAAAATGAG
GTGAGGTAATGGATGTTTCACAGGAACTGGACCCCATCCATTCTTTTGTTTACTATTACA
GTGCAAAGTTGAATCAGTATTCTTGAGAGCTGTATCATCTATACTAGACTTCTCTAACTC
CCTGAAATGCAACAAACCTACCCCATCTGTATTCACATTTACAAAATTTATATCAGGCAT
CTCTTCATCAAAAGACCCCTCA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q9MZT1 |
| Definition |
sp|Q9MZT1|CLCN1_CANFA Chloride channel protein, skeletal muscle OS=Canis familiaris |
| Align length |
33 |
| Score (bit) |
31.2 |
| E-value |
2.0 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915861|Adiantum capillus-veneris mRNA, clone:
YMU001_000078_D08.
(442 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9MZT1|CLCN1_CANFA Chloride channel protein, skeletal muscle ... 31 2.0
sp|P17821|DNAK_CHLTR Chaperone protein dnaK OS=Chlamydia trachom... 31 2.6
sp|Q3KLV7|DNAK_CHLTA Chaperone protein dnaK OS=Chlamydia trachom... 31 2.6
sp|Q9NUW8|TYDP1_HUMAN Tyrosyl-DNA phosphodiesterase 1 OS=Homo sa... 30 5.7
sp|P56836|DNAK_CHLMU Chaperone protein dnaK OS=Chlamydia muridar... 30 5.9
sp|P34369|PRP8_CAEEL Pre-mRNA-splicing factor 8 homolog OS=Caeno... 29 7.7
sp|Q9Z2E3|ERN2_MOUSE Serine/threonine-protein kinase/endoribonuc... 29 10.0
sp|Q824B2|DNAK_CHLCV Chaperone protein dnaK OS=Chlamydophila cav... 29 10.0
sp|Q3AUR6|AROC_SYNS9 Chorismate synthase OS=Synechococcus sp. (s... 29 10.0
sp|Q9SLK6|ALA6_ARATH Putative phospholipid-transporting ATPase 6... 29 10.0
>sp|Q9MZT1|CLCN1_CANFA Chloride channel protein, skeletal muscle
OS=Canis familiaris GN=CLCN1 PE=1 SV=1
Length = 976
Score = 31.2 bits (69), Expect = 2.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 270 PVPVKHPLPHLILTGQENHGVGILHEGMPIAPE 172
P+P HPLP L+ +E++G H+ P APE
Sbjct: 722 PLPPPHPLPSAPLSSEESNGPLPSHKQQPEAPE 754
>sp|P17821|DNAK_CHLTR Chaperone protein dnaK OS=Chlamydia
trachomatis GN=dnaK PE=1 SV=4
Length = 660
Score = 30.8 bits (68), Expect = 2.6
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = -2
Query: 270 PVPVKHPLPHLILTGQENHGVGILHEGMPIAPEKDLKEIQSEAASGLSEHSVRDLMRS-- 97
P P HP + N GILH A ++I+ EA+SGL E ++ ++R
Sbjct: 462 PAPRGHPQIEVTFDIDAN---GILHVSAKDAASGREQKIRIEASSGLKEDEIQQMIRDAE 518
Query: 96 --KRTRRQHTHTMAAENRAD 43
K +Q +N AD
Sbjct: 519 LHKEEDKQRKEASDVKNEAD 538
>sp|Q3KLV7|DNAK_CHLTA Chaperone protein dnaK OS=Chlamydia
trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=dnaK
PE=2 SV=1
Length = 660
Score = 30.8 bits (68), Expect = 2.6
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = -2
Query: 270 PVPVKHPLPHLILTGQENHGVGILHEGMPIAPEKDLKEIQSEAASGLSEHSVRDLMRS-- 97
P P HP + N GILH A ++I+ EA+SGL E ++ ++R
Sbjct: 462 PAPRGHPQIEVTFDIDAN---GILHVSAKDAASGREQKIRIEASSGLKEDEIQQMIRDAE 518
Query: 96 --KRTRRQHTHTMAAENRAD 43
K +Q +N AD
Sbjct: 519 LHKEEDKQRKEASDVKNEAD 538
>sp|Q9NUW8|TYDP1_HUMAN Tyrosyl-DNA phosphodiesterase 1 OS=Homo
sapiens GN=TDP1 PE=1 SV=2
Length = 608
Score = 29.6 bits (65), Expect = 5.7
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 89 HEDN-IHTQWQQKTEQIWLLPI 27
H N IH W QKT+ IWL P+
Sbjct: 280 HTSNLIHADWHQKTQGIWLSPL 301
>sp|P56836|DNAK_CHLMU Chaperone protein dnaK OS=Chlamydia muridarum
GN=dnaK PE=2 SV=2
Length = 655
Score = 29.6 bits (65), Expect = 5.9
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -2
Query: 270 PVPVKHPLPHLILTGQENHGVGILHEGMPIAPEKDLKEIQSEAASGLSEHSVRDLMR--- 100
P P HP + N GILH A ++I+ EA+SGL E ++ ++R
Sbjct: 462 PAPRGHPQIEVTFDIDAN---GILHVSAKDAASGREQKIRIEASSGLKEEEIQQMIRDAE 518
Query: 99 -SKRTRRQHTHTMAAENRAD 43
+K ++ +N AD
Sbjct: 519 LNKEEDKKRREASDIKNEAD 538
>sp|P34369|PRP8_CAEEL Pre-mRNA-splicing factor 8 homolog
OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1
Length = 2329
Score = 29.3 bits (64), Expect = 7.7
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = -2
Query: 393 NTDGVGLL-HFRE--LEKSSIDDTALK-----NTDSTLHCNSKQKNGWGPVPVKHPLPHL 238
NT +GL+ +FRE + + D +K T + NSK + + PV +
Sbjct: 1256 NTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPV--------V 1307
Query: 237 ILTGQENHGVGILHEGMPIAPEKDLKEIQSEAASGLS 127
T +E G+G+L G + P+ DL+ +Q A G++
Sbjct: 1308 FYTPKEIGGLGMLSMGHVLIPQSDLRWMQQTEAGGVT 1344
>sp|Q9Z2E3|ERN2_MOUSE Serine/threonine-protein
kinase/endoribonuclease IRE2 OS=Mus musculus GN=Ern2
PE=2 SV=1
Length = 911
Score = 28.9 bits (63), Expect = 10.0
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2
Query: 198 HEGMPIAPEKDLKEIQSEAASGLSEHSVRDLMRSKRTRRQHTHTMAAENRADL 40
H+ + + DLK +S + SVRDL+R+ R ++ H + AE R L
Sbjct: 811 HKHISAPLQADLKRFRSYKGT-----SVRDLLRAMRNKKHHYRELPAEVRQTL 858
>sp|Q824B2|DNAK_CHLCV Chaperone protein dnaK OS=Chlamydophila caviae
GN=dnaK PE=2 SV=1
Length = 664
Score = 28.9 bits (63), Expect = 10.0
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = -2
Query: 270 PVPVKHPLPHLILTGQENHGVGILHEGMPIAPEKDLKEIQSEAASGLSEHSVR----DLM 103
P P HP + N GILH A ++I+ EA+SGL E ++ D
Sbjct: 462 PAPRGHPQIEVTFDIDAN---GILHVSAKDAASGREQKIRIEASSGLKEDEIQRMINDAE 518
Query: 102 RSKRTRRQHTHTMAAENRAD 43
+ K ++ A N AD
Sbjct: 519 KHKEEDKKRREASDARNEAD 538
>sp|Q3AUR6|AROC_SYNS9 Chorismate synthase OS=Synechococcus sp.
(strain CC9902) GN=aroC PE=3 SV=1
Length = 364
Score = 28.9 bits (63), Expect = 10.0
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -2
Query: 237 ILTGQENHG--VGILHEGMPIAPEKDLKEIQSE 145
I T E+HG VG++ EG P E DL EIQ+E
Sbjct: 11 ISTFGESHGGGVGVIVEGCPPRLELDLDEIQAE 43
>sp|Q9SLK6|ALA6_ARATH Putative phospholipid-transporting ATPase 6
OS=Arabidopsis thaliana GN=ALA6 PE=1 SV=1
Length = 1244
Score = 28.9 bits (63), Expect = 10.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 299 QCKVESVFLRAVSSILDFSNSLKCNKPTPSVFTF 400
+C ++ L S +FS ++KC P P+++TF
Sbjct: 208 RCLDATLALEKDESFQNFSGTIKCEDPNPNLYTF 241
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A6WYT0 |
| Definition |
tr|A6WYT0|A6WYT0_OCHA4 ABC transporter related OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) |
| Align length |
71 |
| Score (bit) |
35.0 |
| E-value |
1.8 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915861|Adiantum capillus-veneris mRNA, clone:
YMU001_000078_D08.
(442 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A6WYT0|A6WYT0_OCHA4 ABC transporter related OS=Ochrobactrum a... 35 1.8
tr|B5PLL8|B5PLL8_SALET Phage portal protein, pbsx family OS=Salm... 35 1.8
tr|B2K350|B2K350_YERPB Phage portal protein, PBSX family OS=Yers... 34 3.1
tr|B1JNV5|B1JNV5_YERPY Phage portal protein, PBSX family OS=Yers... 34 3.1
tr|B4LXS5|B4LXS5_DROVI GJ22841 OS=Drosophila virilis GN=GJ22841 ... 34 3.1
tr|A0NZF3|A0NZF3_9RHOB Transcriptional regulator, LacI family pr... 34 4.1
tr|A8LF61|A8LF61_FRASN Two component transcriptional regulator, ... 33 5.4
tr|B5F269|B5F269_SALA4 Phage portal protein, pbsx family OS=Salm... 33 7.0
tr|B1BR67|B1BR67_CLOPE Putative uncharacterized protein OS=Clost... 33 7.0
tr|A3XI85|A3XI85_9FLAO Cell division protein ftsZ OS=Leeuwenhoek... 33 7.0
tr|B2VQY7|B2VQY7_PYRTR Predicted protein OS=Pyrenophora tritici-... 33 7.0
tr|Q0K427|Q0K427_RALEH Transposase IS30 OS=Ralstonia eutropha (s... 33 9.2
tr|B6IWN3|B6IWN3_RHOCS Glucosamine--fructose-6-phosphate aminotr... 33 9.2
tr|B6PU62|B6PU62_BRAFL Putative uncharacterized protein OS=Branc... 33 9.2
>tr|A6WYT0|A6WYT0_OCHA4 ABC transporter related OS=Ochrobactrum
anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
GN=Oant_1417 PE=3 SV=1
Length = 515
Score = 35.0 bits (79), Expect = 1.8
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = -2
Query: 375 LLHFRELEKSSIDDTALKNTDSTLHCNSKQ----KNGWGPVPVKHPLPHLILTGQENHGV 208
LL R + KS + TAL + D TL+C +NG G K L ++ G
Sbjct: 14 LLEARSITKSFLGVTALDHVDFTLNCGEIHALLGENGAG----KSTLIKILTGAYHGFGG 69
Query: 207 GILHEGMPIAP 175
IL EG PIAP
Sbjct: 70 SILLEGQPIAP 80
>tr|B5PLL8|B5PLL8_SALET Phage portal protein, pbsx family
OS=Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537 GN=SeW_A3103 PE=4 SV=1
Length = 339
Score = 35.0 bits (79), Expect = 1.8
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -2
Query: 408 NFVNVNTDGVGLLHFRELEKSSIDDTALKNTDSTLHCNSKQKNGWGPVPVKHPLPHLILT 229
N V N DG GL H E +++ D + L K +NGWG V +PLP L
Sbjct: 76 NMVTANYDGGGLTH--EQLGAAVFDWLTFGDVAIL----KVRNGWGDVIALYPLPALYTR 129
Query: 228 GQENHGVGILHEGMP-IAPEKDL 163
++ +L +G P I P +D+
Sbjct: 130 QRKTGEFVVLQQGEPVIYPPEDI 152
>tr|B2K350|B2K350_YERPB Phage portal protein, PBSX family
OS=Yersinia pseudotuberculosis serotype IB (strain
PB1/+) GN=YPTS_3587 PE=4 SV=1
Length = 340
Score = 34.3 bits (77), Expect = 3.1
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = -2
Query: 408 NFVNVNTDGVGLLHFRELEKSSIDDTALKNTDSTLHCNSKQKNGWGPVPVKHPLPHLILT 229
N V + G GL H EL+ D + +K +NGWG V PLP L L
Sbjct: 76 NMVAADYVGGGLTH-EELKAGVFDYLTFGDV-----AIAKVRNGWGDVVALAPLPSLYLR 129
Query: 228 GQENHGVGILHEGMPI 181
+++ + IL +G P+
Sbjct: 130 VRKDDSIVILQKGEPL 145
>tr|B1JNV5|B1JNV5_YERPY Phage portal protein, PBSX family
OS=Yersinia pseudotuberculosis serotype O:3 (strain
YPIII) GN=YPK_0896 PE=4 SV=1
Length = 341
Score = 34.3 bits (77), Expect = 3.1
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = -2
Query: 408 NFVNVNTDGVGLLHFRELEKSSIDDTALKNTDSTLHCNSKQKNGWGPVPVKHPLPHLILT 229
N V + G GL H EL+ D + +K +NGWG V PLP L L
Sbjct: 77 NMVAADYVGGGLTH-EELKAGVFDYLTFGDV-----AIAKVRNGWGEVVALAPLPSLYLR 130
Query: 228 GQENHGVGILHEGMPI 181
+++ + IL +G P+
Sbjct: 131 VRKDDSIVILQKGEPL 146
>tr|B4LXS5|B4LXS5_DROVI GJ22841 OS=Drosophila virilis GN=GJ22841 PE=4
SV=1
Length = 1620
Score = 34.3 bits (77), Expect = 3.1
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = -2
Query: 225 QENHGVGILHEGMPIAPEKDLKEIQSEAASGLSEHSVRDLMRSKRTRRQHTHTMAAENRA 46
+ NH VG++ +GM +A L I S +++ LS S+ ++ QH H + +
Sbjct: 1273 ESNHSVGLMGQGMRLASSTAL-SISSSSSTSLSTPSITTAASGRQAMHQHQHQHPHQPHS 1331
Query: 45 DLATANNVH 19
AT+N+ H
Sbjct: 1332 --ATSNSHH 1338
>tr|A0NZF3|A0NZF3_9RHOB Transcriptional regulator, LacI family
protein OS=Labrenzia aggregata IAM 12614
GN=SIAM614_31206 PE=4 SV=1
Length = 324
Score = 33.9 bits (76), Expect = 4.1
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = -2
Query: 414 DINFVNVNTDGVGLLHFRELEKSSID-DTALKNTDSTLHCNSKQKNGWGPVPVKHPLPHL 238
++ F + VG +HF E +K S+ D + GWG +P+ LP+
Sbjct: 235 EVVFFQNDNMAVGAIHFCESQKISVPRDLGIA--------------GWGELPIASVLPYR 280
Query: 237 ILTGQENHGVGILHEGMPIAPEKDLKEIQSEAASGLSEHSVR 112
+ T Q NH L G IA EK L I ++A +++ R
Sbjct: 281 LTTVQVNH----LRIGQ-IASEKLLMRINGDSARKVTDVGFR 317
>tr|A8LF61|A8LF61_FRASN Two component transcriptional regulator,
LuxR family OS=Frankia sp. (strain EAN1pec)
GN=Franean1_0340 PE=4 SV=1
Length = 221
Score = 33.5 bits (75), Expect = 5.4
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -2
Query: 255 HPLPHLILTGQENHGVGILHEGMPIAPEKDLKEIQSEAASG-LSEHSVRDLMRSKRTRRQ 79
H LP +L G GVG L + E ++ + AA G + + V DLM + R+RR
Sbjct: 94 HYLP--VLFGANARGVGYLLKERVTGIEAFVEAVTRVAAGGCVLDPEVVDLMIAARSRRD 151
Query: 78 HTHTMAAENRADLA 37
HT+ A R LA
Sbjct: 152 PLHTLTAREREVLA 165
>tr|B5F269|B5F269_SALA4 Phage portal protein, pbsx family
OS=Salmonella agona (strain SL483) GN=SeAg_B2801 PE=4
SV=1
Length = 339
Score = 33.1 bits (74), Expect = 7.0
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -2
Query: 408 NFVNVNTDGVGLLHFRELEKSSIDDTALKNTDSTLHCNSKQKNGWGPVPVKHPLPHLILT 229
N V N +G GL H E +++ D + L K +NGWG V +PLP L
Sbjct: 76 NMVTANYNGGGLTH--EQLGAAVFDWLTFGDVAIL----KVRNGWGDVIALYPLPALYTR 129
Query: 228 GQENHGVGILHEGMP-IAPEKDL 163
++ +L +G P I P +D+
Sbjct: 130 QRKTGEFVVLQQGEPVIYPPEDI 152
>tr|B1BR67|B1BR67_CLOPE Putative uncharacterized protein
OS=Clostridium perfringens E str. JGS1987 GN=AC3_A0197
PE=4 SV=1
Length = 275
Score = 33.1 bits (74), Expect = 7.0
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = -2
Query: 417 PDINFVNVNTDGVGLLHFRELEK----SSIDDTALKNTDS 310
PD N +N T G+ +HF ELEK S+DD+ L TDS
Sbjct: 131 PDANLLN--TIGINEMHFIELEKFQEIDSLDDSLLNKTDS 168
>tr|A3XI85|A3XI85_9FLAO Cell division protein ftsZ
OS=Leeuwenhoekiella blandensis MED217 GN=MED217_15745
PE=3 SV=1
Length = 678
Score = 33.1 bits (74), Expect = 7.0
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -2
Query: 396 VNTDGVGLLHFRELEKSSIDDTALKNTDSTLHCNSKQKNGWGPVPVKHPLPHLI 235
VNT+ ++H E E+ + D + KNT TL+ ++ P P K P+ H +
Sbjct: 333 VNTETKKIIHTLEDEQRAQHDLSPKNTGGTLNFDTPAPKKEAPAPEKKPIVHTL 386
|