NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915865
Clone id YMU001_000078_E09
Library
Length 394
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000078_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCAAACAAAAAAGTAATTTGGCATATAAACAGTCATAACTCCAGGTGATGAATACCGAG
CCATTCTTTACAACACCTGAAAACCCAAAGATGACACTGATATTTTGATCGTCATCAGGA
CGGTAGTATTGGGTATTAGAAAAGCCTTAGTATTGGGCATTAGAAAAGCCTCAAACCAAC
GTTGGCACCCACATTAAATGTCAGTTAAGTTGTATAATAGAGGACACCATGGTACATGCT
CTTTTTCAAAGAGTTGCATCATTATACTATTCAGCTGCATTTGCCCTTTCACATTCGTCT
ATCCAGTCACTATACACATCAATGGGTTCGCTCAAAGCATCAATTTGGGTAGTGTAATGC
TCTTGGCAGATTCTGCAATTGACTTCACCAATTG
■■Homology search results ■■ -
sp_hit_id Q8LHP0
Definition sp|Q8LHP0|ELOF1_ORYSJ Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica
Align length 41
Score (bit) 68.9
E-value 7.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915865|Adiantum capillus-veneris mRNA, clone:
YMU001_000078_E09.
         (394 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8LHP0|ELOF1_ORYSJ Transcription elongation factor 1 homolog ...    69   7e-12
sp|Q8LEF3|ELOF1_ARATH Transcription elongation factor 1 homolog ...    63   4e-10
sp|Q9XVZ8|ELOF1_CAEEL Transcription elongation factor 1 homolog ...    62   1e-09
sp|P60003|ELOF1_MOUSE Transcription elongation factor 1 homolog ...    55   1e-07
sp|P60002|ELOF1_HUMAN Transcription elongation factor 1 homolog ...    55   1e-07
sp|A4IFR3|ELOF1_BOVIN Transcription elongation factor 1 homolog ...    55   1e-07
sp|Q8MQI6|ELOF1_DROME Transcription elongation factor 1 homolog ...    55   1e-07
sp|P36053|ELF1_YEAST Transcription elongation factor 1 OS=Saccha...    52   1e-06
sp|Q9U501|ELOF1_MANSE Transcription elongation factor 1 homolog ...    51   2e-06
sp|O13868|ELOF1_SCHPO Transcription elongation factor 1 homolog ...    49   6e-06
sp|Q54KR5|ELOF1_DICDI Transcription elongation factor 1 homolog ...    49   1e-05
sp|Q8STS7|ELOF1_ENCCU Transcription elongation factor 1 homolog ...    39   0.008
sp|Q8MIQ9|P_PIG P protein OS=Sus scrofa GN=Oca2 PE=2 SV=3              32   0.99 
sp|P0ACK9|FUCR_SHIFL L-fucose operon activator OS=Shigella flexn...    29   8.3  
sp|P0ACK8|FUCR_ECOLI L-fucose operon activator OS=Escherichia co...    29   8.3  
sp|P61349|GATB_WOLPM Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    29   8.4  

>sp|Q8LHP0|ELOF1_ORYSJ Transcription elongation factor 1 homolog
           OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3
           SV=1
          Length = 89

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 27/41 (65%), Positives = 36/41 (87%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERANAAE 270
           IGE +CRICQE+++T ++AL+EPID+YS+WIDECER N  E
Sbjct: 44  IGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVE 84


>sp|Q8LEF3|ELOF1_ARATH Transcription elongation factor 1 homolog
           OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1
          Length = 120

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 26/41 (63%), Positives = 33/41 (80%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERANAAE 270
           IG+  CRIC+E ++T I AL+E ID+YS+WIDECER N AE
Sbjct: 44  IGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAE 84


>sp|Q9XVZ8|ELOF1_CAEEL Transcription elongation factor 1 homolog
           OS=Caenorhabditis elegans GN=Y54G11A.11 PE=2 SV=1
          Length = 84

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 24/40 (60%), Positives = 32/40 (80%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERANAA 273
           +G ++CR+C E + T I+ LSEPIDVYSDW+D CE+AN A
Sbjct: 45  VGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQANNA 84


>sp|P60003|ELOF1_MOUSE Transcription elongation factor 1 homolog
           OS=Mus musculus GN=Elof1 PE=1 SV=1
          Length = 83

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = -3

Query: 389 GEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERAN 279
           G ++C +C E + T I  LSEP+DVYSDWID CE AN
Sbjct: 46  GVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82


>sp|P60002|ELOF1_HUMAN Transcription elongation factor 1 homolog
           OS=Homo sapiens GN=ELOF1 PE=2 SV=1
          Length = 83

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = -3

Query: 389 GEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERAN 279
           G ++C +C E + T I  LSEP+DVYSDWID CE AN
Sbjct: 46  GVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82


>sp|A4IFR3|ELOF1_BOVIN Transcription elongation factor 1 homolog
           OS=Bos taurus GN=ELOF1 PE=3 SV=1
          Length = 83

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = -3

Query: 389 GEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERAN 279
           G ++C +C E + T I  LSEP+DVYSDWID CE AN
Sbjct: 46  GVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82


>sp|Q8MQI6|ELOF1_DROME Transcription elongation factor 1 homolog
           OS=Drosophila melanogaster GN=CG40228 PE=1 SV=1
          Length = 82

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = -3

Query: 386 EVNCRICQEHYTTQIDALSEPIDVYSDWIDECERAN 279
           ++ CR+C E + T I+ LSEPIDVY+DW+D CE AN
Sbjct: 47  KITCRVCLEDFQTGINFLSEPIDVYNDWVDACETAN 82


>sp|P36053|ELF1_YEAST Transcription elongation factor 1
           OS=Saccharomyces cerevisiae GN=ELF1 PE=1 SV=1
          Length = 145

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 19/39 (48%), Positives = 30/39 (76%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERANA 276
           IG ++C+IC + + T+I++LS+P+DVYSDW D  E  N+
Sbjct: 44  IGTLSCKICGQSFQTRINSLSQPVDVYSDWFDAVEEVNS 82


>sp|Q9U501|ELOF1_MANSE Transcription elongation factor 1 homolog
           OS=Manduca sexta PE=3 SV=1
          Length = 82

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -3

Query: 383 VNCRICQEHYTTQIDALSEPIDVYSDWIDECERAN 279
           + C +C E + T  + LSEPIDVY+DW+D CE AN
Sbjct: 48  IQCTVCLEDFHTTTNVLSEPIDVYNDWVDACESAN 82


>sp|O13868|ELOF1_SCHPO Transcription elongation factor 1 homolog
           OS=Schizosaccharomyces pombe GN=SPAC1B3.02c PE=1 SV=1
          Length = 107

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECER-ANAAE 270
           +G ++C+IC + +   I ALS PIDVYSDWID C+  AN A+
Sbjct: 44  VGNLHCKICGQSHQCLITALSAPIDVYSDWIDACDAVANQAK 85
tr_hit_id B6SHB6
Definition tr|B6SHB6|B6SHB6_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 46
Score (bit) 71.2
E-value 2.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915865|Adiantum capillus-veneris mRNA, clone:
YMU001_000078_E09.
         (394 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SHB6|B6SHB6_MAIZE Putative uncharacterized protein OS=Zea m...    71   2e-11
tr|Q0D4E9|Q0D4E9_ORYSJ Os07g0631100 protein OS=Oryza sativa subs...    69   1e-10
tr|B6U0N8|B6U0N8_MAIZE Putative uncharacterized protein OS=Zea m...    69   1e-10
tr|A2X2X2|A2X2X2_ORYSI Putative uncharacterized protein OS=Oryza...    69   1e-10
tr|A9SB15|A9SB15_PHYPA Predicted protein OS=Physcomitrella paten...    67   4e-10
tr|A9NZH2|A9NZH2_PICSI Putative uncharacterized protein OS=Picea...    67   4e-10
tr|A9SG68|A9SG68_PHYPA Predicted protein OS=Physcomitrella paten...    67   6e-10
tr|B6SX26|B6SX26_MAIZE Transcription elongation factor 1 OS=Zea ...    66   1e-09
tr|Q0E463|Q0E463_ORYSJ Os02g0134300 protein OS=Oryza sativa subs...    65   2e-09
tr|A7P1V1|A7P1V1_VITVI Chromosome chr19 scaffold_4, whole genome...    65   2e-09
tr|A2X0L5|A2X0L5_ORYSI Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|A9PJX4|A9PJX4_POPJC Putative uncharacterized protein OS=Popul...    62   1e-08
tr|A9P8R4|A9P8R4_POPTR Putative uncharacterized protein OS=Popul...    62   1e-08
tr|B4L0H3|B4L0H3_DROMO GI11689 OS=Drosophila mojavensis GN=GI116...    60   4e-08
tr|A8XCE9|A8XCE9_CAEBR Putative uncharacterized protein OS=Caeno...    60   4e-08
tr|A8P8F7|A8P8F7_BRUMA Hypothetical UPF0222 protein Y54G11A.11 i...    60   5e-08
tr|B4LIH2|B4LIH2_DROVI GJ11363 OS=Drosophila virilis GN=GJ11363 ...    60   7e-08
tr|Q5VMA3|Q5VMA3_ORYSJ Putative uncharacterized protein P0046E09...    57   4e-07
tr|A2Y9J8|A2Y9J8_ORYSI Putative uncharacterized protein OS=Oryza...    57   4e-07
tr|Q0IFZ5|Q0IFZ5_AEDAE Putative uncharacterized protein OS=Aedes...    57   5e-07
tr|A7RXA0|A7RXA0_NEMVE Predicted protein OS=Nematostella vectens...    57   5e-07
tr|B7U159|B7U159_PHYPO ELF-1-like protein OS=Physarum polycephal...    57   6e-07
tr|B0WEX0|B0WEX0_CULQU Putative uncharacterized protein OS=Culex...    57   6e-07
tr|B7PWX0|B7PWX0_IXOSC Putative uncharacterized protein OS=Ixode...    56   8e-07
tr|B6NDG1|B6NDG1_BRAFL Putative uncharacterized protein OS=Branc...    56   8e-07
tr|B3M9W3|B3M9W3_DROAN GF20068 OS=Drosophila ananassae GN=GF2006...    56   8e-07
tr|Q7PH52|Q7PH52_ANOGA AGAP003707-PA OS=Anopheles gambiae GN=AGA...    56   1e-06
tr|B3S0Z5|B3S0Z5_TRIAD Putative uncharacterized protein OS=Trich...    56   1e-06
tr|Q6P8B1|Q6P8B1_XENTR Elongation factor 1 homolog (ELF1, S. cer...    55   2e-06
tr|Q545S6|Q545S6_MOUSE Putative uncharacterized protein OS=Mus m...    55   2e-06

>tr|B6SHB6|B6SHB6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 89

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 29/46 (63%), Positives = 39/46 (84%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERANAAE*YNDA 255
           IGE +CRICQE+++T ++AL+EPID+YS+WIDECER N  E  +DA
Sbjct: 44  IGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNTVEGDDDA 89


>tr|Q0D4E9|Q0D4E9_ORYSJ Os07g0631100 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0631100 PE=4 SV=1
          Length = 89

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 27/41 (65%), Positives = 36/41 (87%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERANAAE 270
           IGE +CRICQE+++T ++AL+EPID+YS+WIDECER N  E
Sbjct: 44  IGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVE 84


>tr|B6U0N8|B6U0N8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 89

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 28/46 (60%), Positives = 38/46 (82%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERANAAE*YNDA 255
           IGE +CRICQE+++  ++AL+EPID+YS+WIDECER N  E  +DA
Sbjct: 44  IGEASCRICQENFSXTVNALTEPIDIYSEWIDECERVNTVEGDDDA 89


>tr|A2X2X2|A2X2X2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06540 PE=4 SV=1
          Length = 89

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 27/41 (65%), Positives = 36/41 (87%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERANAAE 270
           IGE +CRICQE+++T ++AL+EPID+YS+WIDECER N  E
Sbjct: 44  IGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVE 84


>tr|A9SB15|A9SB15_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_109853 PE=4 SV=1
          Length = 86

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERAN 279
           IGE +CRIC E ++T ID+LS+PIDVYSDWIDECER N
Sbjct: 44  IGEASCRICLEKFSTPIDSLSDPIDVYSDWIDECERIN 81


>tr|A9NZH2|A9NZH2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 84

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERAN 279
           IGE +CRICQE ++T I+ALSEP+DVY +WIDECER N
Sbjct: 44  IGEASCRICQESFSTSINALSEPVDVYCEWIDECERVN 81


>tr|A9SG68|A9SG68_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_106396 PE=4 SV=1
          Length = 86

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERAN 279
           IGE +CRIC E ++T ID+LS+PIDVYSDWIDECER N
Sbjct: 44  IGEASCRICLETFSTPIDSLSDPIDVYSDWIDECERIN 81


>tr|B6SX26|B6SX26_MAIZE Transcription elongation factor 1 OS=Zea
           mays PE=4 SV=1
          Length = 92

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 29/49 (59%), Positives = 39/49 (79%), Gaps = 3/49 (6%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPI---DVYSDWIDECERANAAE*YNDA 255
           IGE +CRICQE+++T ++AL+EPI   D+YS+WIDECER N  E  +DA
Sbjct: 44  IGEASCRICQENFSTTVNALTEPILEKDIYSEWIDECERVNTVEGDDDA 92


>tr|Q0E463|Q0E463_ORYSJ Os02g0134300 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0134300 PE=4 SV=1
          Length = 105

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 26/41 (63%), Positives = 34/41 (82%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERANAAE 270
           IGE +CRIC E ++T ++AL+EPID+YS+WIDECER N  E
Sbjct: 44  IGEASCRICLETFSTSVNALTEPIDIYSEWIDECERVNNPE 84


>tr|A7P1V1|A7P1V1_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027763001
           PE=4 SV=1
          Length = 92

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 27/41 (65%), Positives = 33/41 (80%)
 Frame = -3

Query: 392 IGEVNCRICQEHYTTQIDALSEPIDVYSDWIDECERANAAE 270
           IGE  CRICQE ++  ++ALSEPIDVYS+WIDECER N  +
Sbjct: 44  IGEAVCRICQESFSMTVNALSEPIDVYSEWIDECERVNTLD 84