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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915872
Clone id YMU001_000078_G12
Library
Length 338
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000078_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAATCTGACATCCACAATCTCTAAGCTGACCAATCGAGATCAAACTCACTGTCAAATTTG
GTACATAGCGCACATGTCGTAACAAGTAAGATGCACCACTCGGTAATGACAGTCTCACAT
CTCCTGCACCTGCTATCGCATGCACTGATCCATCGGTCAAACGTACACTGTCAAGCATCC
CGCTAGAATAGCTACAAAACCATTCACGATGCGACGTGACATGAAACATAGCATCTGCGT
CTAGCAACCACTGCGAAGGGAGTGCACTATCCACATGTATAGCATCTCGTGCATAGCTCG
AGGTACAAGTGACATTCCCGTCACTAGTATACTTCGAC
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 97
Score (bit) 60.8
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915872|Adiantum capillus-veneris mRNA, clone:
YMU001_000078_G12.
         (338 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    61   2e-09
sp|P25601|YCH5_YEAST Putative transposon Ty5-1 protein YCL075W O...    40   0.003
sp|A3MA48|HUTI_ACIBT Imidazolonepropionase OS=Acinetobacter baum...    31   2.2  
sp|Q3ZBI7|USMG5_BOVIN Up-regulated during skeletal muscle growth...    29   6.4  
sp|Q8EIL8|MACB_SHEON Macrolide export ATP-binding/permease prote...    29   6.4  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 32/97 (32%), Positives = 56/97 (57%)
 Frame = -2

Query: 325 SDGNVTCTSSYARDAIHVDSALPSQWLLDADAMFHVTSHREWFCSYSSGMLDSVRLTDGS 146
           ++ NV    +   + +H+ S   S+W++D  A  H T  R+ FC Y +G   +V++ + S
Sbjct: 270 NNDNVVLFINEEEECMHL-SGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTS 328

Query: 145 VHAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVSLIS 35
              IAG GD+ +    G + +L+ VR+VP+L ++LIS
Sbjct: 329 YSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLIS 365


>sp|P25601|YCH5_YEAST Putative transposon Ty5-1 protein YCL075W
           OS=Saccharomyces cerevisiae GN=TY5B PE=4 SV=1
          Length = 146

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
 Frame = -2

Query: 319 GNVTCTSSYARDAIHVDSALPSQWLLDADAMFHVTSHREWFCSYS-SGMLDSVRLTDGSV 143
           G +T  S     +  V +   S+W+ D     H+   R  F S++ S   D VR   GS+
Sbjct: 56  GQITPKSWLCMLSSTVPATKSSEWIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSI 115

Query: 142 HAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVSLISI 32
             I G+G V +      +  L  V YVP+L V+LIS+
Sbjct: 116 -PIMGSGTVNIG-----TVQLHDVSYVPDLPVNLISV 146


>sp|A3MA48|HUTI_ACIBT Imidazolonepropionase OS=Acinetobacter
           baumannii (strain ATCC 17978 / NCDC KC 755) GN=hutI PE=3
           SV=2
          Length = 401

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -2

Query: 160 LTDGSVHAIAGAGDVRLSLPSGASYLLRHVRYVP 59
           +T+  V A+A +G V + LP GA YLLR  +Y P
Sbjct: 263 MTEDDVKAMAASGTVAVLLP-GAFYLLRETQYPP 295


>sp|Q3ZBI7|USMG5_BOVIN Up-regulated during skeletal muscle growth
           protein 5 OS=Bos taurus GN=USMG5 PE=1 SV=1
          Length = 58

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 241 DADAMFHVTSHREWFCSYS-SGMLDSVRLTDGSVHAI 134
           +ADA FH T  +++F SY+ +G ++ V  T GS+  I
Sbjct: 5   EADAQFHFTGIKKYFNSYTLTGRMNCVLATYGSIALI 41


>sp|Q8EIL8|MACB_SHEON Macrolide export ATP-binding/permease protein
           macB OS=Shewanella oneidensis GN=macB PE=3 SV=1
          Length = 656

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = -2

Query: 223 HVTSHREWFCSYSSGMLDSVRLTDGSVHAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVS 44
           HV  H +       G++ S      S  A+    D+ L+ PSGA+ +    RY   L ++
Sbjct: 206 HVAQHADRIIEIKDGVIISDEPNLASQTAVKAQVDMSLAKPSGATRVAAWDRYAEALKMA 265

Query: 43  LISIGQLR 20
           L+++   R
Sbjct: 266 LLAMSTHR 273
tr_hit_id A5B5N4
Definition tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 110
Score (bit) 87.8
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915872|Adiantum capillus-veneris mRNA, clone:
YMU001_000078_G12.
         (338 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis...    88   2e-16
tr|A7Q4Q2|A7Q4Q2_VITVI Chromosome chr10 scaffold_50, whole genom...    87   5e-16
tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, wh...    86   7e-16
tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whol...    86   7e-16
tr|A7NUU2|A7NUU2_VITVI Chromosome chr18 scaffold_1, whole genome...    86   7e-16
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5CB53|A5CB53_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5C9A6|A5C9A6_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5BPZ5|A5BPZ5_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5BFU1|A5BFU1_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5B0V5|A5B0V5_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5B0C8|A5B0C8_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5AVU6|A5AVU6_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A5AHK1|A5AHK1_VITVI Putative uncharacterized protein OS=Vitis...    86   7e-16
tr|A7NW85|A7NW85_VITVI Chromosome chr5 scaffold_2, whole genome ...    86   9e-16
tr|A7P0C8|A7P0C8_VITVI Chromosome chr6 scaffold_3, whole genome ...    86   1e-15
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis...    86   1e-15
tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis...    86   1e-15
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis...    86   1e-15
tr|A5B1S3|A5B1S3_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5ADV4|A5ADV4_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5AK46|A5AK46_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5BJ32|A5BJ32_VITVI Putative uncharacterized protein OS=Vitis...    84   4e-15
tr|A5AQN2|A5AQN2_VITVI Putative uncharacterized protein OS=Vitis...    84   4e-15

>tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005765 PE=4 SV=1
          Length = 1261

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -2

Query: 334 KYTSDGNVTCTSSYARDAI--HVDSALPSQWLLDADAMFHVTSHREWFCSYSSGMLDSVR 161
           K   D +    +   +DA+   VDS L   W+LD+ A FH T HRE   +Y +G    V 
Sbjct: 220 KKNEDDSANXVTEEVQDALLLAVDSPL-DDWVLDSGASFHTTPHREIIQNYVAGDFGKVY 278

Query: 160 LTDGSVHAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVSLISIGQLRDCG 11
           L DGS   + G GDVR+SLP+G+ +LL  VRY+P+L  +LIS+GQL D G
Sbjct: 279 LADGSALDVVGLGDVRISLPNGSVWLLEKVRYIPDLRRNLISVGQLDDEG 328


>tr|A7Q4Q2|A7Q4Q2_VITVI Chromosome chr10 scaffold_50, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029789001
           PE=4 SV=1
          Length = 354

 Score = 86.7 bits (213), Expect = 5e-16
 Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -2

Query: 334 KYTSDGNVTCTSSYARDAI--HVDSALPSQWLLDADAMFHVTSHREWFCSYSSGMLDSVR 161
           K   D +    +   +DA+   VDS L   W+LD+ A FH T HRE   +Y +G    V 
Sbjct: 197 KKNEDDSANAVTEEVQDALLLAVDSPL-DDWVLDSGASFHTTPHREIIQNYVAGDFGKVY 255

Query: 160 LTDGSVHAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVSLISIGQLRDCG 11
           L DGS   I G GDVR+SLP+G+ +LL  VR++P+L  +LIS+GQL D G
Sbjct: 256 LADGSTLDIVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEG 305


>tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009987001 PE=4 SV=1
          Length = 466

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -2

Query: 334 KYTSDGNVTCTSSYARDAI--HVDSALPSQWLLDADAMFHVTSHREWFCSYSSGMLDSVR 161
           K   D +    +   +DA+   VDS L   W+LD+ A FH T HRE   +Y +G    V 
Sbjct: 197 KKNEDDSANAVTEEVQDALLLTVDSPL-DDWVLDSGASFHTTPHREIIQNYVAGDFGKVY 255

Query: 160 LTDGSVHAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVSLISIGQLRDCG 11
           L DGS   + G GDVR+SLP+G+ +LL  VR++P+L  +LIS+GQL D G
Sbjct: 256 LADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEG 305


>tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037749001 PE=4 SV=1
          Length = 788

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -2

Query: 334 KYTSDGNVTCTSSYARDAI--HVDSALPSQWLLDADAMFHVTSHREWFCSYSSGMLDSVR 161
           K   D +    +   +DA+   VDS L   W+LD+ A FH T HRE   +Y +G    V 
Sbjct: 540 KKNEDDSANAVTEEVQDALLLAVDSPL-DDWVLDSGASFHTTPHREIIQNYVAGDFGKVY 598

Query: 160 LTDGSVHAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVSLISIGQLRDCG 11
           L DGS   + G GDVR+SLP+G+ +LL  VR++P+L  +LIS+GQL D G
Sbjct: 599 LADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEG 648


>tr|A7NUU2|A7NUU2_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015182001
           PE=4 SV=1
          Length = 379

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -2

Query: 334 KYTSDGNVTCTSSYARDAI--HVDSALPSQWLLDADAMFHVTSHREWFCSYSSGMLDSVR 161
           K   D +    +   +DA+   VDS L   W+LD+ A FH T HRE   +Y +G    V 
Sbjct: 213 KKNEDDSANAVTEEVQDALLLAVDSPL-DDWVLDSGASFHTTPHREIIQNYVAGDFGKVY 271

Query: 160 LTDGSVHAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVSLISIGQLRDCG 11
           L DGS   + G GDVR+SLP+G+ +LL  VR++P+L  +LIS+GQL D G
Sbjct: 272 LADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEG 321


>tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001479 PE=4 SV=1
          Length = 1246

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -2

Query: 334 KYTSDGNVTCTSSYARDAI--HVDSALPSQWLLDADAMFHVTSHREWFCSYSSGMLDSVR 161
           K   D +    +   +DA+   VDS L   W+LD+ A FH T HRE   +Y +G    V 
Sbjct: 229 KKNEDDSANAVTEEVQDALLLAVDSPL-DDWVLDSGASFHTTPHREIIQNYVAGDFGKVY 287

Query: 160 LTDGSVHAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVSLISIGQLRDCG 11
           L DGS   + G GDVR+SLP+G+ +LL  VR++P+L  +LIS+GQL D G
Sbjct: 288 LADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEG 337


>tr|A5CB53|A5CB53_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034155 PE=4 SV=1
          Length = 405

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -2

Query: 334 KYTSDGNVTCTSSYARDAI--HVDSALPSQWLLDADAMFHVTSHREWFCSYSSGMLDSVR 161
           K   D +    +   +DA+   VDS L   W+LD+ A FH T HRE   +Y +G    V 
Sbjct: 257 KKNQDDSANAVTEEVQDALLLAVDSPL-DDWVLDSGASFHTTPHREIIQNYVAGDFGKVY 315

Query: 160 LTDGSVHAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVSLISIGQLRDCG 11
           L DGS   + G GDVR+SLP+G+ +LL  VR++P+L  +LIS+GQL D G
Sbjct: 316 LADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEG 365


>tr|A5C9A6|A5C9A6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001707 PE=4 SV=1
          Length = 1286

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -2

Query: 334 KYTSDGNVTCTSSYARDAI--HVDSALPSQWLLDADAMFHVTSHREWFCSYSSGMLDSVR 161
           K   D +    +   +DA+   VDS L   W+LD+ A FH T HRE   +Y +G    V 
Sbjct: 257 KKNEDDSANAVTEEVQDALLLAVDSPL-DDWVLDSGASFHTTPHREIIQNYVAGDFGKVY 315

Query: 160 LTDGSVHAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVSLISIGQLRDCG 11
           L DGS   + G GDVR+SLP+G+ +LL  VR++P+L  +LIS+GQL D G
Sbjct: 316 LADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEG 365


>tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040966 PE=4 SV=1
          Length = 1212

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -2

Query: 334 KYTSDGNVTCTSSYARDAI--HVDSALPSQWLLDADAMFHVTSHREWFCSYSSGMLDSVR 161
           K   D +    +   +DA+   VDS L   W+LD+ A FH T HRE   +Y +G    V 
Sbjct: 257 KKNEDDSANAVTEEVQDALLLAVDSPL-DDWVLDSGASFHTTPHREIIQNYVAGDFGKVY 315

Query: 160 LTDGSVHAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVSLISIGQLRDCG 11
           L DGS   + G GDVR+SLP+G+ +LL  VR++P+L  +LIS+GQL D G
Sbjct: 316 LADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLXRNLISVGQLDDEG 365


>tr|A5BPZ5|A5BPZ5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030442 PE=4 SV=1
          Length = 391

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -2

Query: 334 KYTSDGNVTCTSSYARDAI--HVDSALPSQWLLDADAMFHVTSHREWFCSYSSGMLDSVR 161
           K   D +    +   +DA+   VDS L   W+LD+ A FH T HRE   +Y +G    V 
Sbjct: 206 KKNEDDSANAVTEEVQDALLLAVDSPL-DDWVLDSGASFHTTPHREIIQNYVAGDFGKVY 264

Query: 160 LTDGSVHAIAGAGDVRLSLPSGASYLLRHVRYVPNLTVSLISIGQLRDCG 11
           L DGS   + G GDVR+SLP+G+ +LL  VR++P+L  +LIS+GQL D G
Sbjct: 265 LADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLXRNLISVGQLDDEG 314