NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915876
Clone id YMU001_000079_A02
Library
Length 337
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTCAATGCAGCTCAAGGGGAGCCATTATAATGTCGCATGGGATGATTTCATTCAAGAACG
CCTTAGAAGACAGCAAATGCTGTATCATACATATCTCCAGCCCCGAGCTGCTTCAATTGA
ACTTGATTGTGGGAACAAGTTGGCGTCAGATGTTATAGAGGATTTGTTAGGTTCTCAAAA
GTATGTTGACATTGGTTGGTGCTCAGAGGAAAGGGCAGAAGAAGAGTTTTATTCTTTCAA
ACCATTTCTGCAGCCTGCTGGCAAAACAATTGAAGAACACAATGCATGCATCAGTAATCA
ATCTCTAGAGGCAGGCAGTACTTTAAATAATAGCTTT
■■Homology search results ■■ -
sp_hit_id Q01107
Definition sp|Q01107|DSC1_BOVIN Desmocollin-1 OS=Bos taurus
Align length 69
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915876|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_A02.
         (337 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01107|DSC1_BOVIN Desmocollin-1 OS=Bos taurus GN=DSC1 PE=1 SV=1     32   0.99 
sp|Q08530|BTR_BORPE Transcriptional regulatory protein btr OS=Bo...    31   1.7  
sp|A6NJG2|ANR58_HUMAN Ankyrin repeat domain-containing protein 5...    31   2.2  
sp|Q7UTQ8|PANC_RHOBA Pantothenate synthetase OS=Rhodopirellula b...    30   3.8  
sp|Q59185|LON1_BORBU ATP-dependent protease La OS=Borrelia burgd...    30   3.8  
sp|A5PK19|K0859_BOVIN Putative methyltransferase KIAA0859 homolo...    30   4.9  
sp|Q2GHV0|ISPF_EHRCR 2-C-methyl-D-erythritol 2,4-cyclodiphosphat...    29   8.4  

>sp|Q01107|DSC1_BOVIN Desmocollin-1 OS=Bos taurus GN=DSC1 PE=1 SV=1
          Length = 893

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
 Frame = +2

Query: 83   YHTYLQPRAASIELDCGNKLASDVIEDLLGSQKYVDIG------WCSEERAEEEFYSFKP 244
            +H + QPR       CG      + ED + S  Y   G       C  +R EEE   F  
Sbjct: 818  WHNFTQPRLGEKVYLCGQDEEHKLCEDYVRSYSYEGKGSVAGSVGCCSDRQEEEGLDFLD 877

Query: 245  FLQPAGKTI 271
             L+P  +T+
Sbjct: 878  HLEPKFRTL 886


>sp|Q08530|BTR_BORPE Transcriptional regulatory protein btr
           OS=Bordetella pertussis GN=btr PE=4 SV=2
          Length = 242

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = +3

Query: 18  GAIIMSHGMISFKN-----ALEDSKCCIIHISSPELLQLNL-IVGTSWRQML*RIC*VLK 179
           G I+   GMI  K+     ALEDS+ C+I +   + +   L  +   +R+++ R      
Sbjct: 90  GEIVGLDGMIESKHVSSAVALEDSEVCVIRLPEIDRVSTQLPSLQQQFRRLMSREITRSH 149

Query: 180 SMLTLVGAQRKGQKKSFILSN 242
            ML  VGA R  Q+ +  L N
Sbjct: 150 QMLATVGAMRSEQRLAAFLLN 170


>sp|A6NJG2|ANR58_HUMAN Ankyrin repeat domain-containing protein 58
           OS=Homo sapiens GN=ANKRD58 PE=2 SV=1
          Length = 315

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 155 IEDLLGSQKYVDIGWCSEERAEE 223
           + +LLG Q+    GW SEERAEE
Sbjct: 74  LRELLGLQRAAPAGWLSEERAEE 96


>sp|Q7UTQ8|PANC_RHOBA Pantothenate synthetase OS=Rhodopirellula
           baltica GN=panC PE=3 SV=1
          Length = 283

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 97  EICMIQHLLSSKAFLNEIIPCDIIMAP 17
           ++C+I+H++       EI+PCDI+  P
Sbjct: 156 QLCVIEHMVRDLNLPIEIVPCDIVREP 182


>sp|Q59185|LON1_BORBU ATP-dependent protease La OS=Borrelia
           burgdorferi GN=lon PE=3 SV=1
          Length = 806

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +2

Query: 50  IQERLRRQQMLYHTYLQPRAASIELDCGNKLASDVIEDLLGSQKYVDIGWCSEERAEEEF 229
           IQERL +QQ  +    Q +A   EL  G+K +SD +E L    K +++     E  E+E 
Sbjct: 248 IQERLEKQQKEFFLKEQLKAIKAELGIGDKKSSD-LEKLKTKLKALELKGEPLEVVEKEL 306

Query: 230 YSF 238
             F
Sbjct: 307 EKF 309


>sp|A5PK19|K0859_BOVIN Putative methyltransferase KIAA0859 homolog
           OS=Bos taurus PE=2 SV=1
          Length = 699

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
 Frame = +2

Query: 38  WDDFIQERLRRQQMLY----------HTYLQPRAASIELDCGNKLASDVIEDLLGSQKYV 187
           W+ F Q+R ++    Y          H Y++PR   + + CGN   S+ + D +G Q  V
Sbjct: 17  WEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVVGCGNSELSEQLYD-VGYQDIV 75

Query: 188 DI 193
           +I
Sbjct: 76  NI 77


>sp|Q2GHV0|ISPF_EHRCR 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
           synthase OS=Ehrlichia chaffeensis (strain Arkansas)
           GN=ispF PE=3 SV=1
          Length = 173

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 174 LKSMLTLVGAQRKGQKKSFILSNHFCSLLAKQLKNTMHA 290
           +KS   L+ AQ+K Q+K + +SN   +++ +Q K   HA
Sbjct: 86  IKSDYFLIEAQKKAQEKGYSISNADITIICEQPKIMPHA 124
tr_hit_id Q23D20
Definition tr|Q23D20|Q23D20_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210
Align length 78
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915876|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_A02.
         (337 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q23D20|Q23D20_TETTH Putative uncharacterized protein OS=Tetra...    34   3.2  
tr|A9AUQ3|A9AUQ3_HERA2 DNA or RNA helicase of superfamily II OS=...    34   4.2  
tr|B6JA29|B6JA29_OLICO Patatin OS=Oligotropha carboxidovorans (s...    33   7.2  

>tr|Q23D20|Q23D20_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00051690 PE=4
           SV=1
          Length = 2087

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/78 (30%), Positives = 40/78 (51%)
 Frame = +2

Query: 77  MLYHTYLQPRAASIELDCGNKLASDVIEDLLGSQKYVDIGWCSEERAEEEFYSFKPFLQP 256
           M Y  Y + R  ++ L+   +    ++ DLL S K  +I   SE+  E+EF SFK F+  
Sbjct: 100 MCYQKYNEIRT-NLNLNKQTEQYKQILNDLLSSTKMKNINLNSEQEFEKEFNSFKKFII- 157

Query: 257 AGKTIEEHNACISNQSLE 310
             + +++    ISN  +E
Sbjct: 158 --EELDQICTKISNDKIE 173


>tr|A9AUQ3|A9AUQ3_HERA2 DNA or RNA helicase of superfamily II
           OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM
           785) GN=Haur_1937 PE=4 SV=1
          Length = 1024

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -3

Query: 260 QQAAEMV*KNKTLLLPFPLSTNQCQHTFENLTNPL*HLTPTCSHNQVQLKQLGAG 96
           Q+ AE +  N+ +LLP+ +++   +H +  LTN        C  +  +L Q+GAG
Sbjct: 368 QKYAEELHCNEVMLLPYYIASMNIEHLYYELTNSYQEFNGICLVDTFELAQVGAG 422


>tr|B6JA29|B6JA29_OLICO Patatin OS=Oligotropha carboxidovorans
           (strain ATCC 49405 / DSM 1227 / OM5) GN=OCAR_4121 PE=4
           SV=1
          Length = 368

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 304 RLITDACIVFFNCFASRLQKWFERIKLFFCPFL*APTNVNIL 179
           R ITD     F   +S +Q WFE +  +F P+   P N+N L
Sbjct: 109 RAITDRLFSIFPFASSPVQNWFETMSRYFSPYDFNPLNINPL 150