BP915877
Clone id YMU001_000079_A03
Library
Length 503
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTGAACAAACTGCACAAACTCCCTAGTAAGGTTCTGGCAAAACTAGAGTTCAATGGTTT
CTATTGCTTGTAGCATTTACAACGACGACTGCCATCACCTTCTATAAAGACAAAAGACCG
TCTGCGTAGTTGCCGAAAACTCTTGTCTTGGAAGTATTTGTCTCCAGACAGTGAATCTCT
ATCAAGGGGATACCATACCATACAAATTCTCAAAAATTATGATAGCTCAAAAAGTCTCAA
CGACTAGCCAAATGCTTTTTTATTCTCATATAACAATGACACCACCAATTGAAGCTTCGC
CAGCAAATACCGAGCTTCAAATCAAGCTGGCCCTCGCAAGTTTTGCAACATTTCCCCGGA
AAAACTCTAGTCCTTCTCCAGTTTTGGAGCTAACCATAATCATTGGCAGCATCAAACATT
TATTCCCCTTGAAAATCTCTATGATCTGTGTCGCACGCCGACCCAGATCCACTGGCGTTA
CAATATCACTCTTTGTCAGTACA
■■Homology search results ■■ -
sp_hit_id Q641Z2
Definition sp|Q641Z2|PTN9_RAT Tyrosine-protein phosphatase non-receptor type 9 OS=Rattus norvegicus
Align length 70
Score (bit) 36.6
E-value 0.068
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915877|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_A03.
(503 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q641Z2|PTN9_RAT Tyrosine-protein phosphatase non-receptor typ... 37 0.068
sp|O35239|PTN9_MOUSE Tyrosine-protein phosphatase non-receptor t... 36 0.089
sp|P43378|PTN9_HUMAN Tyrosine-protein phosphatase non-receptor t... 36 0.089
sp|Q8EJ79|RSGA_SHEON Putative ribosome biogenesis GTPase rsgA OS... 35 0.15
sp|Q5UR72|YR624_MIMIV Putative GTP-binding protein R624 OS=Acant... 33 0.75
sp|Q07TY1|ENGB_RHOP5 Probable GTP-binding protein engB OS=Rhodop... 32 1.3
sp|Q9X242|RSGA_THEMA Putative ribosome biogenesis GTPase rsgA OS... 31 2.9
sp|Q5FPX9|ENGB_GLUOX Probable GTP-binding protein engB OS=Glucon... 31 2.9
sp|Q2GKS7|ENGB_ANAPZ Probable GTP-binding protein engB OS=Anapla... 31 2.9
sp|Q9P5N1|YH84_SCHPO Putative cell-type specific agglutination p... 31 3.7
sp|Q31CK0|FPG_PROM9 Formamidopyrimidine-DNA glycosylase OS=Proch... 31 3.7
sp|Q9QXC1|FETUB_MOUSE Fetuin-B OS=Mus musculus GN=Fetub PE=1 SV=1 31 3.7
sp|Q0BU77|ENGB_GRABC Probable GTP-binding protein engB OS=Granul... 31 3.7
sp|A8G2Y9|FPG_PROM2 Formamidopyrimidine-DNA glycosylase OS=Proch... 30 4.9
sp|Q7VNU1|TDHA_HAEDU TonB-dependent heme receptor A OS=Haemophil... 30 6.4
sp|Q6NC42|ENGB_RHOPA Probable GTP-binding protein engB OS=Rhodop... 30 6.4
sp|A3DD83|DEOB_CLOTH Phosphopentomutase OS=Clostridium thermocel... 30 6.4
sp|Q46IY9|UREG_PROMT Urease accessory protein ureG OS=Prochloroc... 30 8.3
sp|Q8JZR0|ACSL5_MOUSE Long-chain-fatty-acid--CoA ligase 5 OS=Mus... 30 8.3
sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Hom... 30 8.3

>sp|Q641Z2|PTN9_RAT Tyrosine-protein phosphatase non-receptor type 9
OS=Rattus norvegicus GN=Ptpn9 PE=2 SV=1
Length = 593

Score = 36.6 bits (83), Expect = 0.068
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3

Query: 195 IPYKFSKIMIAQKVSTTSQMLFYSHITMTPPIEASPANTELQIKLALA--SFATFPRKNS 368
+PY +++ KV Q+L S +T P E P N IK+ LA +F P+ N
Sbjct: 197 VPYSIISLLLKDKVRERIQILKTSEVTQHLPRECLPENLGGYIKIDLATWNFQFLPQVNG 256

Query: 369 SPSPVLELTI 398
P P E+ +
Sbjct: 257 HPDPFDEIIL 266


>sp|O35239|PTN9_MOUSE Tyrosine-protein phosphatase non-receptor type
9 OS=Mus musculus GN=Ptpn9 PE=2 SV=2
Length = 593

Score = 36.2 bits (82), Expect = 0.089
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3

Query: 195 IPYKFSKIMIAQKVSTTSQMLFYSHITMTPPIEASPANTELQIKLALA--SFATFPRKNS 368
+PY +++ KV Q+L S +T P E P N +K+ LA +F P+ N
Sbjct: 197 VPYSIISLLLKDKVRERIQILKTSEVTQHLPRECLPENLGGYVKIDLATWNFQFLPQVNG 256

Query: 369 SPSPVLELTI 398
P P E+ +
Sbjct: 257 HPDPFDEIIL 266


>sp|P43378|PTN9_HUMAN Tyrosine-protein phosphatase non-receptor type
9 OS=Homo sapiens GN=PTPN9 PE=1 SV=1
Length = 593

Score = 36.2 bits (82), Expect = 0.089
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3

Query: 195 IPYKFSKIMIAQKVSTTSQMLFYSHITMTPPIEASPANTELQIKLALA--SFATFPRKNS 368
+PY +++ KV Q+L S +T P E P N +K+ LA +F P+ N
Sbjct: 197 VPYSIISLLLKDKVRERIQILKTSEVTQHLPRECLPENLGGYVKIDLATWNFQFLPQVNG 256

Query: 369 SPSPVLELTI 398
P P E+ +
Sbjct: 257 HPDPFDEIIL 266


>sp|Q8EJ79|RSGA_SHEON Putative ribosome biogenesis GTPase rsgA
OS=Shewanella oneidensis GN=rsgA PE=3 SV=1
Length = 354

Score = 35.4 bits (80), Expect = 0.15
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = -2

Query: 502 VLTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLARASL 323
+L K D++TP + A I E K + + P+ VSSK GEGLE + +
Sbjct: 162 ILNKIDLLTPEE----APAIEEALKRYQDIGYPVYKVSSKLGEGLETIKALLKDKV---- 213

Query: 322 I*SSVFAGEASIG 284
SVFAG++ +G
Sbjct: 214 ---SVFAGQSGVG 223


>sp|Q5UR72|YR624_MIMIV Putative GTP-binding protein R624
OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R624 PE=3
SV=1
Length = 480

Score = 33.1 bits (74), Expect = 0.75
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -2

Query: 445 IIEIFKGNKCLMLPMIMVSSKTGEGLEFFR 356
+I+ F+ K ++P+IMVS+KTG + F R
Sbjct: 208 LIDSFQNRKTFVMPVIMVSNKTGHNINFVR 237


>sp|Q07TY1|ENGB_RHOP5 Probable GTP-binding protein engB
OS=Rhodopseudomonas palustris (strain BisA53) GN=engB
PE=3 SV=1
Length = 216

Score = 32.3 bits (72), Expect = 1.3
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -2

Query: 502 VLTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGLEFFRGNVAKL 338
VLTK+D V P +L R E + + +++ SS+ G+ R + KL
Sbjct: 157 VLTKADQVKPAELAERVAATTEALRKHPAAFPEIVVTSSRNASGMPELRAAIIKL 211


>sp|Q9X242|RSGA_THEMA Putative ribosome biogenesis GTPase rsgA
OS=Thermotoga maritima GN=rsgA PE=1 SV=1
Length = 295

Score = 31.2 bits (69), Expect = 2.9
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = -2

Query: 502 VLTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGL----EFFRGNVAKLA 335
V+ K D+ DL R+ ++ EI+ G + P++ S+KTG G+ E+ +G ++ +A
Sbjct: 115 VINKMDLYDEDDL-RKVRELEEIYSG----LYPIVKTSAKTGMGIEELKEYLKGKISTMA 169

Query: 334 RAS 326
S
Sbjct: 170 GLS 172


>sp|Q5FPX9|ENGB_GLUOX Probable GTP-binding protein engB
OS=Gluconobacter oxydans GN=engB PE=3 SV=1
Length = 227

Score = 31.2 bits (69), Expect = 2.9
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -2

Query: 502 VLTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLA 335
VLTK D V P L + ++ + + +I SS+TG G+E R +A+ A
Sbjct: 159 VLTKCDQVKPKALAAKIAEVEALALKHAAAYPRIIATSSETGFGIEDLRAEIARFA 214


>sp|Q2GKS7|ENGB_ANAPZ Probable GTP-binding protein engB OS=Anaplasma
phagocytophilum (strain HZ) GN=engB PE=3 SV=1
Length = 193

Score = 31.2 bits (69), Expect = 2.9
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2

Query: 502 VLTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGL 368
VLTK+D ++ LG + + +G L+ P++ VSSK+G G+
Sbjct: 138 VLTKADKLSEQALGSMVSFVQNQAQGGNFLLQPIMWVSSKSGRGI 182


>sp|Q9P5N1|YH84_SCHPO Putative cell-type specific agglutination
protein C359.04c OS=Schizosaccharomyces pombe
GN=SPBC359.04c PE=2 SV=1
Length = 358

Score = 30.8 bits (68), Expect = 3.7
Identities = 25/87 (28%), Positives = 38/87 (43%)
Frame = +3

Query: 150 GSICLQTVNLYQGDTIPYKFSKIMIAQKVSTTSQMLFYSHITMTPPIEASPANTELQIKL 329
GS L + ++ TI S I V T+S +L S I T P+ P +
Sbjct: 76 GSKSLSSSSILSNSTISTS-SSTPITASVPTSSSILSNSTIPTTSPV---PTTSSTPTSS 131

Query: 330 ALASFATFPRKNSSPSPVLELTIIIGS 410
++ S +T P +S + + TII GS
Sbjct: 132 SILSNSTIPSSSSISASTITTTIISGS 158


tr_hit_id Q84TX8
Definition tr|Q84TX8|Q84TX8_ORYSJ Os03g0816400 protein OS=Oryza sativa subsp. japonica
Align length 57
Score (bit) 62.0
E-value 2.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915877|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_A03.
(503 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q84TX8|Q84TX8_ORYSJ Os03g0816400 protein OS=Oryza sativa subs... 62 2e-08
tr|A2XNC8|A2XNC8_ORYSI Putative uncharacterized protein OS=Oryza... 62 2e-08
tr|A9TN91|A9TN91_PHYPA Predicted protein (Fragment) OS=Physcomit... 60 6e-08
tr|Q3E897|Q3E897_ARATH Uncharacterized protein At5g58370.2 OS=Ar... 59 1e-07
tr|A7NY25|A7NY25_VITVI Chromosome chr6 scaffold_3, whole genome ... 57 4e-07
tr|Q39Q47|Q39Q47_GEOMG Selenocysteine-specific translation elong... 44 0.004
tr|B0P5S3|B0P5S3_9FIRM Putative uncharacterized protein OS=Anaer... 40 0.081
tr|Q94C58|Q94C58_ARATH Putative GTP-binding protein CGPA OS=Arab... 39 0.11
tr|A3AP12|A3AP12_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.14
tr|Q028S0|Q028S0_SOLUE Selenocysteine-specific translation elong... 38 0.24
tr|B3E308|B3E308_GEOLS Selenocysteine-specific translation elong... 37 0.40
tr|Q74GZ1|Q74GZ1_GEOSL Selenocysteine-specific translation elong... 37 0.69
tr|Q2M4G8|Q2M4G8_MOUSE Protein tyrosine phosphatase, non-recepto... 36 0.90
tr|A2D8S0|A2D8S0_TRIVA Surface antigen BspA-like OS=Trichomonas ... 36 0.90
tr|A5GDF8|A5GDF8_GEOUR Selenocysteine-specific translation elong... 35 1.5
tr|B6Q7R8|B6Q7R8_PENMA Pfs domain protein OS=Penicillium marneff... 35 2.0
tr|B1SQ44|B1SQ44_9BACI Patatin OS=Geobacillus sp. WCH70 GN=GWCH7... 34 3.4
tr|Q2NW87|Q2NW87_SODGM Putative uncharacterized protein OS=Sodal... 34 4.5
tr|B8F962|B8F962_9DELT Selenocysteine-specific translation elong... 34 4.5
tr|B4AZW1|B4AZW1_9CHRO Putative uncharacterized protein OS=Cyano... 34 4.5
tr|Q76EL6|Q76EL6_ADE08 E3A4 20.3k OS=Human adenovirus D serotype... 33 7.6
tr|Q9WXQ8|Q9WXQ8_THEMA Iron(II) transport protein B OS=Thermotog... 33 7.6
tr|Q0HR34|Q0HR34_SHESR Ribosome small subunit-dependent GTPase A... 33 7.6
tr|Q0HMP7|Q0HMP7_SHESM Ribosome small subunit-dependent GTPase A... 33 7.6
tr|A5IL19|A5IL19_THEP1 Ferrous iron transport protein B OS=Therm... 33 7.6
tr|A0KSQ9|A0KSQ9_SHESA Ribosome small subunit-dependent GTPase A... 33 7.6
tr|B7RE20|B7RE20_9THEM Ferrous iron transport protein B OS=Marin... 33 7.6
tr|B7FQ16|B7FQ16_PHATR Predicted protein OS=Phaeodactylum tricor... 33 7.6
tr|Q7QGJ6|Q7QGJ6_ANOGA AGAP011568-PA (Fragment) OS=Anopheles gam... 33 7.6
tr|Q0U866|Q0U866_PHANO Putative uncharacterized protein OS=Phaeo... 33 7.6

>tr|Q84TX8|Q84TX8_ORYSJ Os03g0816400 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0094J08.26 PE=4 SV=1
Length = 571

Score = 62.0 bits (149), Expect = 2e-08
Identities = 30/57 (52%), Positives = 42/57 (73%)
Frame = -2

Query: 502 VLTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLAR 332
VLTK+D+V P+D+ RRA +I E K NK ++ P++MVSSKTG G+ RG + K+AR
Sbjct: 511 VLTKTDLVFPIDVARRAVEIQESLKKNKSVVRPVMMVSSKTGAGVRNLRGVLGKIAR 567


>tr|A2XNC8|A2XNC8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_14063 PE=4 SV=1
Length = 571

Score = 62.0 bits (149), Expect = 2e-08
Identities = 30/57 (52%), Positives = 42/57 (73%)
Frame = -2

Query: 502 VLTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLAR 332
VLTK+D+V P+D+ RRA +I E K NK ++ P++MVSSKTG G+ RG + K+AR
Sbjct: 511 VLTKTDLVFPIDVARRAVEIQESLKKNKSVVRPVMMVSSKTGAGVRNLRGVLGKIAR 567


>tr|A9TN91|A9TN91_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_148111 PE=4 SV=1
Length = 305

Score = 60.1 bits (144), Expect = 6e-08
Identities = 31/56 (55%), Positives = 41/56 (73%)
Frame = -2

Query: 502 VLTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLA 335
VLTK+DI+ P+DL RRATQI E K +K L+LP++MVSS+TG G+ R + LA
Sbjct: 243 VLTKTDILPPLDLARRATQIQEALKHHKQLILPVLMVSSQTGGGIPHLRKALVNLA 298


>tr|Q3E897|Q3E897_ARATH Uncharacterized protein At5g58370.2
OS=Arabidopsis thaliana GN=At5g58370 PE=4 SV=1
Length = 465

Score = 59.3 bits (142), Expect = 1e-07
Identities = 28/57 (49%), Positives = 42/57 (73%)
Frame = -2

Query: 502 VLTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLAR 332
VLTK+D+V P+D+ RRA QI E K N+ ++ P++MVSS++G G+ R +AK+AR
Sbjct: 405 VLTKTDVVFPIDVARRAMQIEEKLKANRSIVQPLMMVSSRSGAGIGSLRTALAKIAR 461


>tr|A7NY25|A7NY25_VITVI Chromosome chr6 scaffold_3, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023958001
PE=4 SV=1
Length = 573

Score = 57.4 bits (137), Expect = 4e-07
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = -2

Query: 502 VLTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLAR 332
+LTK+D+V P+D+ RRA QI E K NK ++ P++MVSSK+G G+ R + K+ R
Sbjct: 513 LLTKTDLVFPIDVARRAMQIEESLKANKSIVQPLMMVSSKSGAGIPSLRTVLGKIGR 569


>tr|Q39Q47|Q39Q47_GEOMG Selenocysteine-specific translation
elongation factor SelB OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=Gmet_3415 PE=4
SV=1
Length = 636

Score = 43.9 bits (102), Expect = 0.004
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = -2

Query: 499 LTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLA 335
LTKSD+V P LG A ++ E G+ P++ VSS+TG G++ +G +A+LA
Sbjct: 114 LTKSDMVDPEWLGLVAEEVREYLAGSFLEEAPVVPVSSRTGAGIDDLKGELARLA 168


>tr|B0P5S3|B0P5S3_9FIRM Putative uncharacterized protein
OS=Anaerotruncus colihominis DSM 17241 GN=ANACOL_00095
PE=4 SV=1
Length = 621

Score = 39.7 bits (91), Expect = 0.081
Identities = 23/56 (41%), Positives = 29/56 (51%)
Frame = -2

Query: 499 LTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLAR 332
LTK D+ P +E F G+ PMI VSS TGEGL+ R +A+ AR
Sbjct: 114 LTKCDLADPETRMLAQADAVEAFAGSFLERAPMIFVSSVTGEGLDDLRALLARKAR 169


>tr|Q94C58|Q94C58_ARATH Putative GTP-binding protein CGPA
OS=Arabidopsis thaliana GN=At5g58370 PE=2 SV=1
Length = 446

Score = 39.3 bits (90), Expect = 0.11
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -2

Query: 502 VLTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPM 401
VLTK+D+V P+D+ RRA QI E K N+ ++ P+
Sbjct: 405 VLTKTDVVFPIDVARRAMQIEEKLKANRSIVQPL 438


>tr|A3AP12|A3AP12_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_012534 PE=4 SV=1
Length = 831

Score = 38.9 bits (89), Expect = 0.14
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = -2

Query: 502 VLTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMI 398
VLTK+D+V P+D+ RRA +I E K NK ++ P++
Sbjct: 771 VLTKTDLVFPIDVARRAVEIQESLKKNKSVVRPVL 805


>tr|Q028S0|Q028S0_SOLUE Selenocysteine-specific translation
elongation factor SelB OS=Solibacter usitatus (strain
Ellin6076) GN=Acid_1490 PE=4 SV=1
Length = 619

Score = 38.1 bits (87), Expect = 0.24
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = -2

Query: 499 LTKSDIVTPVDLGRRATQIIEIFKGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLARA 329
LTKSD+V LG ++ E+ G+ P++ VSS TG GL+ R +A++A A
Sbjct: 114 LTKSDLVDADILGLVRMEVEELVAGSFLESAPIVPVSSTTGAGLDDLRRELARVAAA 170