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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915878
Clone id YMU001_000079_A04
Library
Length 420
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATGAGATACAATCAATGCATTGGCACACAGATCAATGTACAATTTTGGTTCACATCACT
TACCATTGAAGTAGCAAGGATGAGAGTATAAGCAAAGAGATGCATTTTTACTATTCGAAT
GATAAGCAACATGATACCCTCATTGTCTAGCATTGTTTTCTTCTACATAAGTGGCTGAAA
GATTGAGGTTTAAAATTAAAAAGAATCGGGTATGGGATGGAGCAACTTCACAATTCAAAG
CTGCTAGGACATTCTATTTGTTGGAAATCATCCAAAATGATGGACTTGAAGATGACATGG
AACTTTTTTGGGTCAAGCCATGGAAAAAGTGAGCACAATGGGGTTGGTGCTATGGTGAAG
AGGAAGGTGACACACGAGCAGATGAAGAGTGATGGTGTGACTCTTGGATGTGCTACAAAT
■■Homology search results ■■ -
sp_hit_id Q8PYZ0
Definition sp|Q8PYZ0|Y708_METMA UPF0284 protein MM_0708 OS=Methanosarcina mazei
Align length 57
Score (bit) 30.4
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915878|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_A04.
         (420 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8PYZ0|Y708_METMA UPF0284 protein MM_0708 OS=Methanosarcina m...    30   3.0  
sp|Q46G29|Y178_METBF UPF0284 protein Mbar_A0178 OS=Methanosarcin...    30   3.9  
sp|Q9DWR1|POLG_HAVNO Genome polyprotein OS=Human hepatitis A vir...    29   8.4  

>sp|Q8PYZ0|Y708_METMA UPF0284 protein MM_0708 OS=Methanosarcina
           mazei GN=MM_0708 PE=3 SV=1
          Length = 349

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +1

Query: 241 LLGHSICWKSSKMMDLKMTWNFFGSSHGKSEHNGVGAMVKRKVTHEQMKSDGVTLGC 411
           ++G SI   ++  M + M   + G+    ++ N +   +K++V  E MK+ G+T GC
Sbjct: 147 VIGESIPGGTTTAMGVLMALGYNGNVSSSADENPLE--LKKQVVEEGMKASGLTFGC 201


>sp|Q46G29|Y178_METBF UPF0284 protein Mbar_A0178 OS=Methanosarcina
           barkeri (strain Fusaro / DSM 804) GN=Mbar_A0178 PE=3
           SV=1
          Length = 349

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 17/73 (23%), Positives = 37/73 (50%)
 Frame = +1

Query: 193 KLKRIGYGMEQLHNSKLLGHSICWKSSKMMDLKMTWNFFGSSHGKSEHNGVGAMVKRKVT 372
           + K +G  +    +  ++G SI   ++  M + M   + G+    ++ N +   +K++V 
Sbjct: 131 RAKFLGKRLRNQVDHVVIGESIPGGTTTAMGVLMALGYNGNVSSSADENPL--KLKKQVI 188

Query: 373 HEQMKSDGVTLGC 411
            E +K+ G+T GC
Sbjct: 189 EEGLKASGLTFGC 201


>sp|Q9DWR1|POLG_HAVNO Genome polyprotein OS=Human hepatitis A virus
            genotype IIIA (isolate NOR-21) PE=3 SV=4
          Length = 2228

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 353  IAPTPLCSLFPWLDPKKFHVIFKSIILDDFQQIE 252
            ++ T LC L  WL+PKK ++  + + L   Q+I+
Sbjct: 945  MSETDLCFLLHWLNPKKINLADRMLGLSGIQEIK 978
tr_hit_id A7T377
Definition tr|A7T377|A7T377_NEMVE Predicted protein OS=Nematostella vectensis
Align length 128
Score (bit) 44.3
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915878|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_A04.
         (420 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7T377|A7T377_NEMVE Predicted protein OS=Nematostella vectens...    44   0.003
tr|B6M9L1|B6M9L1_BRAFL Putative uncharacterized protein OS=Branc...    40   0.044
tr|B6PI51|B6PI51_BRAFL Putative uncharacterized protein OS=Branc...    39   0.17 
tr|A7RSN4|A7RSN4_NEMVE Predicted protein OS=Nematostella vectens...    38   0.22 
tr|A7RQU3|A7RQU3_NEMVE Predicted protein OS=Nematostella vectens...    34   3.1  
tr|Q30QY9|Q30QY9_SULDN Putative uncharacterized protein OS=Sulfu...    34   4.1  
tr|B6NBL5|B6NBL5_BRAFL Putative uncharacterized protein OS=Branc...    33   9.2  
tr|B6PU24|B6PU24_BRAFL Putative uncharacterized protein (Fragmen...    30   9.2  

>tr|A7T377|A7T377_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g221694 PE=4 SV=1
          Length = 455

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
 Frame = +1

Query: 1   NEIQSMHWHTDQCTILVHITYH*SSKDESISKEMHFYYSNDKQHD--TLIV*HCFLLHKW 174
           +EIQS HW  +Q T+     +   S +   +   H   ++D  HD  ++ V   + ++  
Sbjct: 66  DEIQSAHWCQEQVTLFTVAIWAKDSANTDTTCNSHVIVTDDHNHDKQSIAVFMDYTINTL 125

Query: 175 LKD*GLKLKRIGY---GMEQLHNSKLLGHSICWKSSKMMDLKMTWNFFGSSHGKSEHNGV 345
           +K+   ++  +     G      ++ + +   +++ +   +K+ W+FF SSHGK   +G+
Sbjct: 126 VKEMFPQVASVDIFSDGPSSQFKNRYMANF--YQTLQQNGVKINWHFFASSHGKGVVDGL 183

Query: 346 GAMVKRKV 369
           G  V+R V
Sbjct: 184 GGTVRRVV 191


>tr|B6M9L1|B6M9L1_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_79791 PE=4 SV=1
          Length = 675

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
 Frame = +1

Query: 1   NEIQSMHWHTDQCTILVHITYH*SSKDESISKEMHFYYSNDKQHDTLIV*HCFLLHKWLK 180
           +EIQS +W+ +  T+   + Y+ +  D  +  E     S++  H++  V      +  LK
Sbjct: 443 DEIQSAYWNCEMVTLHPVVLYYRAQGDSELQHESICVVSDELGHNSSTV------YAILK 496

Query: 181 D*GLKLKRIGYGMEQLH----------NSKLLGHSICWKSSKMMDLKMTWNFFGSSHGKS 330
               K+K+  + ++ +H           +K +  S+     ++  +  TWN+F + HGK 
Sbjct: 497 RLLPKIKQ-NHDVQYIHYWTDSPSSQYRNKTI-FSVVSDHKELFGVPATWNYFEAGHGKG 554

Query: 331 EHNGVGAMVKRKVTHEQMKSDGVTL 405
             +GVG   KR +  + +K D   +
Sbjct: 555 PCDGVGGTAKR-MADDAVKRDSAKI 578


>tr|B6PI51|B6PI51_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_107227 PE=4 SV=1
          Length = 485

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
 Frame = +1

Query: 1   NEIQSMHWHTDQCTILVHITYH*SSKDESISKEMHFYYSNDKQHDTLIV*HCFLLHKWL- 177
           +EIQS +W+ D  T+   + Y+ S   E +  E     S++  H+   V   F + K + 
Sbjct: 126 DEIQSAYWNCDMVTLHPTVIYYKSENGE-LHHESICVVSDELGHNAATV---FAILKRVV 181

Query: 178 ---KD*GLKLKRIGYGME----QLHNSKLLGHSICWKSSKMMDLKMTWNFFGSSHGKSEH 336
              K     LK I Y  +    Q  N  +   SI      +  +   WN+F + HGK   
Sbjct: 182 PEVKQRHPHLKYIHYWTDSPSSQYRNKTMF--SILSDHESLFGVPACWNYFEAGHGKGPC 239

Query: 337 NGVGAMVKR 363
           +GVG   KR
Sbjct: 240 DGVGGTAKR 248


>tr|A7RSN4|A7RSN4_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g201526 PE=4 SV=1
          Length = 437

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 15/147 (10%)
 Frame = +1

Query: 19  HWHTDQCTILVHITYH*SSKDESISKEMHFYYSNDKQHDTLIV*HCF------------- 159
           HW  +  T+   + Y    K++ +    +   S+D  HD   V + F             
Sbjct: 4   HWSNETVTVFTAVVYFKDEKND-LQHVSYAIISDDLSHDKGSV-YSFNAAIIDDIKQKIN 61

Query: 160 --LLHKWLKD*GLKLKRIGYGMEQLHNSKLLGHSICWKSSKMMDLKMTWNFFGSSHGKSE 333
              +H W    G + K       + + S LL H   + S      + TW+FF ++HGK  
Sbjct: 62  FEKVHYWSDGAGSQFKN------RYNLSCLLYHQRDFGS------EATWSFFETAHGKGP 109

Query: 334 HNGVGAMVKRKVTHEQMKSDGVTLGCA 414
            +G+GA VKR V    +++  V    A
Sbjct: 110 CDGIGAKVKRVVWRSILQNKSVVTNAA 136


>tr|A7RQU3|A7RQU3_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g200736 PE=4 SV=1
          Length = 900

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 271 SKMMDLKMTWNFFGSSHGKSEHNGVGAMVKRKVTHEQMKSDG 396
           ++ +    +W +F SSHGK   +GVG   K  V  +    DG
Sbjct: 423 AQKLQKNFSWKYFASSHGKGVVDGVGGRAKSLVRQKSKSKDG 464


>tr|Q30QY9|Q30QY9_SULDN Putative uncharacterized protein
           OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
           1251) GN=Suden_1314 PE=4 SV=1
          Length = 315

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/34 (41%), Positives = 25/34 (73%)
 Frame = -1

Query: 138 GIMLLIIRIVKMHLFAYTLILATSMVSDVNQNCT 37
           G+ L++++I+ ++LFAY L + T+ +SD NQ  T
Sbjct: 99  GMYLIVLKIINLYLFAYWLRIHTTDISDKNQPYT 132


>tr|B6NBL5|B6NBL5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_93187 PE=4 SV=1
          Length = 1566

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 253 SICWKSSKMMDLKMTWNFFGSSHGKSEHNGVGAMVKR 363
           S+     ++  +  TWN+F + HGK   +GVG   KR
Sbjct: 719 SVVSDHKELFGVPATWNYFEAGHGKGPCDGVGGTAKR 755


>tr|B6PU24|B6PU24_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_186091 PE=4 SV=1
          Length = 131

 Score = 29.6 bits (65), Expect(2) = 9.2
 Identities = 23/78 (29%), Positives = 31/78 (39%)
 Frame = -2

Query: 398 TPSLFICSCVTFLFTIAPTPLCSLFPWLDPKKFHVIFKSIILDDFQQIECPSSFEL*SCS 219
           TPSL++ SC   L+  A TP   L         H    S+ L       C  S  + SC+
Sbjct: 11  TPSLYLHSCTPSLYLHACTPSLYLHSCTASLYLHTCTSSLYLHRLH--SCTPSLYVHSCT 68

Query: 218 IPYPILFNFKPQSFSHLC 165
            P   L +  P  + H C
Sbjct: 69  -PSLYLHSCTPSLYLHAC 85



 Score = 22.3 bits (46), Expect(2) = 9.2
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
 Frame = -3

Query: 91  LYSHPC----YFNGK*CEPKLYIDLCANALIV 8
           LY H C    Y +   C P LY+  C  +L V
Sbjct: 80  LYLHACTPSLYLHS--CTPSLYLHTCTPSLYV 109