BP915879
Clone id YMU001_000079_A05
Library
Length 399
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GATGCAATTATAACCATGGGATAAACATAGCCATTAATAAAGTCAGCGATAACTATGCCT
CCATGCATGACCATGTGCGCCCTCTAATTATAAAAGCCACACAAGAATACCTTACGTTCT
TTTGCCCTGCAGTACCGTCGCTACGCACCCAAAGAAAGGAGGACACAGGCAGAGCCCCTC
AAGTATGGAAGAGTTTATATCTCTTTTATACCGAAATGCGTCAAATTCTGCCGCTTTTGC
TTCAAGTTTAATTGAGATCCGCTTCTCTTGAAACCTGATTTCCTCAAACTTCCACATCAA
CAAAAACACATACAAGACATGGTGCCAATGTTAATTCACCTCCCAATTATCCATTTGCTT
CTACTGGACGTGGGCCAGGAATCCACTTGTGTACTCTTC
■■Homology search results ■■ -
sp_hit_id P42489
Definition sp|P42489|DPOL_ASFB7 DNA polymerase beta OS=African swine fever virus (strain Badajoz 1971 Vero-adapted)
Align length 44
Score (bit) 30.0
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915879|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_A05.
(399 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P42489|DPOL_ASFB7 DNA polymerase beta OS=African swine fever ... 30 3.7
sp|Q6D2U2|FDHE_ERWCT Protein fdhE homolog OS=Erwinia carotovora ... 29 6.4
sp|O72120|CAPSD_CACV4 Capsid protein OS=Canine calicivirus (stra... 29 6.4
sp|Q9FN18|NRAM4_ARATH Metal transporter Nramp4 OS=Arabidopsis th... 29 8.3
sp|P43139|DPOL_ASFL6 DNA polymerase beta OS=African swine fever ... 29 8.3
sp|Q6JWR2|S38A7_RAT Putative sodium-coupled neutral amino acid t... 29 8.3

>sp|P42489|DPOL_ASFB7 DNA polymerase beta OS=African swine fever
virus (strain Badajoz 1971 Vero-adapted) GN=DPOL PE=3
SV=1
Length = 1207

Score = 30.0 bits (66), Expect = 3.7
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1

Query: 25 T*PLIKSAITMPPCMTMC--AL*L*KPHKNTLRSFALQYRRYAP 150
T PL + ITM PC L KN L SFA Q+ R+AP
Sbjct: 241 TEPLASTCITMAPCKKSSEWTTILCSSEKNLLLSFAEQFSRWAP 284


>sp|Q6D2U2|FDHE_ERWCT Protein fdhE homolog OS=Erwinia carotovora
subsp. atroseptica GN=fdhE PE=3 SV=1
Length = 309

Score = 29.3 bits (64), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3

Query: 153 RKEDTGRAPQVWKSLYLFYTEMRQILP 233
R E+ +AP +W +L LF+ +M +LP
Sbjct: 149 RAENNDKAPFIWAALSLFWAQMAGLLP 175


>sp|O72120|CAPSD_CACV4 Capsid protein OS=Canine calicivirus (strain
48) GN=ORF2 PE=1 SV=1
Length = 691

Score = 29.3 bits (64), Expect = 6.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3

Query: 126 PAVPSLRTQRKEDTGRAPQVWKSLYLFYT 212
P+ P++ T TG P+ WK+ + +YT
Sbjct: 181 PSAPAMATLATAATGTMPEEWKNFFSYYT 209


>sp|Q9FN18|NRAM4_ARATH Metal transporter Nramp4 OS=Arabidopsis
thaliana GN=NRAMP4 PE=2 SV=1
Length = 512

Score = 28.9 bits (63), Expect = 8.3
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = +1

Query: 37 IKSAITMPPCMTMCAL*L*KPHKNTLRSFALQYRRYAPKERRTQAEPLKY------GRVY 198
IK A+ + C+ M PH L S +Q R PK+R E LKY G +
Sbjct: 232 IKQAVGIVGCIIM-------PHNVFLHSALVQSREVDPKKRFRVKEALKYYSIESTGALA 284

Query: 199 ISFI 210
+SFI
Sbjct: 285 VSFI 288


>sp|P43139|DPOL_ASFL6 DNA polymerase beta OS=African swine fever
virus (isolate Pig/Portugal/Lis 60/1960) GN=DPOL PE=3
SV=1
Length = 1244

Score = 28.9 bits (63), Expect = 8.3
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Frame = +1

Query: 25 T*PLIKSAITMPPCMT-------MCAL*L*KPHKNTLRSFALQYRRYAP 150
T PL + ITM PC +C+ KN L SFA Q+ R+AP
Sbjct: 241 TEPLASTCITMAPCKKSPEWTTIVCS-----SEKNLLLSFAEQFSRWAP 284


>sp|Q6JWR2|S38A7_RAT Putative sodium-coupled neutral amino acid
transporter 7 OS=Rattus norvegicus GN=Slc38a7 PE=2 SV=1
Length = 463

Score = 28.9 bits (63), Expect = 8.3
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -3

Query: 217 ISV*KRYKLFHT*GALPVSSFLWVRSDGTAGQKNVRYSCVAFIIRGRTWSCMEA*LSLTL 38
+SV Y + H G V LW+R GT +++V +++ W LTL
Sbjct: 331 LSVLTSYPILHFCGRAVVEG-LWLRYKGTPVEEDVGRERRRRVLQTLVW------FLLTL 383

Query: 37 LMAMFIP 17
L+A+FIP
Sbjct: 384 LLALFIP 390


tr_hit_id A6V4M2
Definition tr|A6V4M2|A6V4M2_PSEA7 Sensor protein OS=Pseudomonas aeruginosa (strain PA7)
Align length 50
Score (bit) 33.1
E-value 7.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915879|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_A05.
(399 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6V4M2|A6V4M2_PSEA7 Sensor protein OS=Pseudomonas aeruginosa ... 33 7.0
tr|A8BWK0|A8BWK0_GIALA Putative uncharacterized protein OS=Giard... 33 7.0

>tr|A6V4M2|A6V4M2_PSEA7 Sensor protein OS=Pseudomonas aeruginosa
(strain PA7) GN=PSPA7_2646 PE=4 SV=1
Length = 445

Score = 33.1 bits (74), Expect = 7.0
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3

Query: 15 HGINIAINKVSDNYASMHDHVRPLIIKATQEYLTFFCPAVPSLRTQRKED 164
H IN I+ +S NY ++ DHVR L+ E L + A P++R Q D
Sbjct: 193 HEINNPISYISSNYTTLEDHVRRLL-----EVLQAYEEARPAIRDQALAD 237


>tr|A8BWK0|A8BWK0_GIALA Putative uncharacterized protein OS=Giardia
lamblia ATCC 50803 GN=GL50803_9573 PE=4 SV=1
Length = 769

Score = 33.1 bits (74), Expect = 7.0
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3

Query: 36 NKVSDNYASMHDHVRPLIIKATQEYLTFFCPAVPSLRTQRKEDTGRAPQVWKSLYLFYT 212
N+ D + + + H I+ E L+F RT + RA QV LYLFYT
Sbjct: 423 NEALDEFEAKYTHKFITIVTTLAEALSFIDRCASENRTTTDDQVSRALQVASYLYLFYT 481