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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915888
Clone id YMU001_000079_B03
Library
Length 429
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCCAACCGAAACGTGCTCCGTTTCCATCGCCGCCTTCTGCCGAGCGTCGACGACCTGCGC
GGATAGCTGTAGTTGACTGCCCCAAATTAACCACGCTTCAATCCTGCGGATTCCTGCCGC
TCGACAGTCCCCTTGCAGCATCTCCTTCGGATTCTTTCCGGGGCCGCGGGTGTCGAAGCA
ACAAATAAAACCAAGACTTGCATCTCCTGAGGAAGGGGAGCCCCAGCGTAATGACGCAGC
TTCAACTCCTCTGCAGCTTCACAGGCAGTAACATTTGCTGGGCGTTACTGCTTGCTGTGC
TAACGATCCCAATATATAGTCTCCTTTTGCTCATGAGTAATATATCCCGCAAGGGTGCTC
ATCTGCATCAGCTGCTGACTCCCGGTTCGCAAGGTTGGCTCCCCATAGTCGGCGAGACTC
TGGAATATG
■■Homology search results ■■ -
sp_hit_id Q9LJK2
Definition sp|Q9LJK2|ABAH4_ARATH Abscisic acid 8'-hydroxylase 4 OS=Arabidopsis thaliana
Align length 49
Score (bit) 33.9
E-value 0.28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915888|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_B03.
         (429 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LJK2|ABAH4_ARATH Abscisic acid 8'-hydroxylase 4 OS=Arabidop...    34   0.28 
sp|Q9JJ79|DYHC2_RAT Cytoplasmic dynein 2 heavy chain 1 OS=Rattus...    33   0.48 
sp|Q45VK7|DYHC2_MOUSE Cytoplasmic dynein 2 heavy chain 1 OS=Mus ...    33   0.48 
sp|O64989|C90B1_ARATH Cytochrome P450 90B1 OS=Arabidopsis thalia...    33   0.48 
sp|Q8NCM8|DYHC2_HUMAN Cytoplasmic dynein 2 heavy chain 1 OS=Homo...    32   0.82 
sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN...    30   5.5  
sp|P18888|SNF6_YEAST Transcription regulatory protein SNF6 OS=Sa...    29   7.0  
sp|Q94IW5|C90D2_ORYSJ Cytochrome P450 90D2 OS=Oryza sativa subsp...    29   7.0  
sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1              29   7.1  
sp|P0C0F6|RPFC_XANCP Sensory/regulatory protein rpfC OS=Xanthomo...    29   9.1  
sp|P0C0F7|RPFC_XANC8 Sensory/regulatory protein rpfC OS=Xanthomo...    29   9.1  
sp|Q8WXH2|JPH3_HUMAN Junctophilin-3 OS=Homo sapiens GN=JPH3 PE=1...    29   9.1  
sp|Q9UJY5|GGA1_HUMAN ADP-ribosylation factor-binding protein GGA...    29   9.1  
sp|Q9ERQ6|CSPG5_RAT Chondroitin sulfate proteoglycan 5 OS=Rattus...    29   9.1  
sp|Q71M36|CSPG5_MOUSE Chondroitin sulfate proteoglycan 5 OS=Mus ...    29   9.1  
sp|O95196|CSPG5_HUMAN Chondroitin sulfate proteoglycan 5 OS=Homo...    29   9.1  
sp|P55284|CADH5_MOUSE Cadherin-5 OS=Mus musculus GN=Cdh5 PE=2 SV=2     29   9.1  
sp|Q3AIK3|APT_SYNSC Adenine phosphoribosyltransferase OS=Synecho...    29   9.3  

>sp|Q9LJK2|ABAH4_ARATH Abscisic acid 8'-hydroxylase 4 OS=Arabidopsis
           thaliana GN=CYP707A4 PE=2 SV=2
          Length = 468

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +3

Query: 279 WALLLAVLTIPIYSLLLLMSNISRKGAHLHQLLTPGSQGWLPIVGETLE 425
           W L++ +L   I  LLL+   +S+K  +    L PGS GW P +GETL+
Sbjct: 5   WFLVVPIL---ILCLLLVRVIVSKKKKNSRGKLPPGSMGW-PYLGETLQ 49


>sp|Q9JJ79|DYHC2_RAT Cytoplasmic dynein 2 heavy chain 1 OS=Rattus
            norvegicus GN=Dync2h1 PE=1 SV=1
          Length = 4306

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = -2

Query: 275  NVTACEAAEELKLRHYAGAPLPQEMQVLVLFVASTPAAPERIRRRCCKGTVERQESAGLK 96
            N    E AEEL       A LP+  Q+   F+    AAPE +R+ C +   E  ++AGL+
Sbjct: 3186 NAQVAEIAEEL-------ATLPKRAQLAAAFITYLSAAPEGLRKNCLE---EWTKAAGLE 3235

Query: 95   R 93
            +
Sbjct: 3236 K 3236


>sp|Q45VK7|DYHC2_MOUSE Cytoplasmic dynein 2 heavy chain 1 OS=Mus
            musculus GN=Dync2h1 PE=1 SV=1
          Length = 4306

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = -2

Query: 275  NVTACEAAEELKLRHYAGAPLPQEMQVLVLFVASTPAAPERIRRRCCKGTVERQESAGLK 96
            N    E AEEL       A LP+  Q+   F+    AAPE +R+ C +   E  ++AGL+
Sbjct: 3186 NAQVAEIAEEL-------ATLPKRAQLAAAFITYLSAAPEGLRKNCLE---EWTKAAGLE 3235

Query: 95   R 93
            +
Sbjct: 3236 K 3236


>sp|O64989|C90B1_ARATH Cytochrome P450 90B1 OS=Arabidopsis thaliana
           GN=CYP90B1 PE=1 SV=1
          Length = 513

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 288 LLAVLTIP-IYSLLLLMSNISRKGAHLHQLLTPGSQGWLPIVGETLEY 428
           LL +L +P + SLLL +  + R+       L PG  GW P +GET+ Y
Sbjct: 9   LLPLLLLPSLLSLLLFLILLKRRNRKTRFNLPPGKSGW-PFLGETIGY 55


>sp|Q8NCM8|DYHC2_HUMAN Cytoplasmic dynein 2 heavy chain 1 OS=Homo
            sapiens GN=DYNC2H1 PE=1 SV=3
          Length = 4307

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -2

Query: 275  NVTACEAAEELKLRHYAGAPLPQEMQVLVLFVASTPAAPERIRRRCCKGTVERQESAGLK 96
            N    E  EEL       A LP+  Q+   F+    AAPE +R+ C +   E  +SAGL+
Sbjct: 3187 NAQVVEITEEL-------ATLPKRAQLAAAFITYLSAAPESLRKTCLE---EWTKSAGLE 3236

Query: 95   R 93
            +
Sbjct: 3237 K 3237


>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus
            GN=Lama5 PE=1 SV=3
          Length = 3718

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -1

Query: 141  MLQGDCRAAGIRRIEAWLIWGSQLQLSAQVVDARQKAAMETEHVS 7
            + QG  +AAGI+      +W  + QL+AQ+ +A+   AM+T   S
Sbjct: 2587 LAQGRLQAAGIQLHN---VWARKNQLAAQIQEAQAMLAMDTSETS 2628


>sp|P18888|SNF6_YEAST Transcription regulatory protein SNF6
           OS=Saccharomyces cerevisiae GN=SNF6 PE=1 SV=1
          Length = 332

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -2

Query: 350 AGYITHEQKETIYWDR*HSKQ*RPANVTACEAAEELKLRHYAGAPLPQEMQVLVLFVAST 171
           A Y TH  ++ +       ++ R   VTA EA +E  L+      L Q+ QV+    + +
Sbjct: 226 ADYWTHAYRDVLAQYHEAKERIRQKEVTAGEAQDEASLQQQQQQDLQQQQQVVTTVASQS 285

Query: 170 PAA 162
           P A
Sbjct: 286 PHA 288


>sp|Q94IW5|C90D2_ORYSJ Cytochrome P450 90D2 OS=Oryza sativa subsp.
           japonica GN=CYP90D2 PE=1 SV=1
          Length = 490

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 375 LTPGSQGWLPIVGETLEY 428
           L PGS GW P+VGETLE+
Sbjct: 49  LPPGSFGW-PVVGETLEF 65


>sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1
          Length = 731

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 204 DASLGFICCFDTRGPGKNPKEMLQGDCRAAGIRRIEAW 91
           +AS   +  F +RGP +  K++++ D    G+  + AW
Sbjct: 466 NASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW 503


>sp|P0C0F6|RPFC_XANCP Sensory/regulatory protein rpfC OS=Xanthomonas
           campestris pv. campestris GN=rpfC PE=3 SV=1
          Length = 677

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 273 ICWALLLAVLTIPIY--SLLLLMSNISRKGAHLHQ 371
           + W LLL ++ +P+Y  SLL  M+   R+  H +Q
Sbjct: 104 LSWGLLLGLIAVPLYFDSLLRAMTRAVREARHANQ 138
tr_hit_id A5AZR5
Definition tr|A5AZR5|A5AZR5_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 43
Score (bit) 36.2
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915888|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_B03.
         (429 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AZR5|A5AZR5_VITVI Putative uncharacterized protein OS=Vitis...    36   0.85 
tr|Q7WCL4|Q7WCL4_BORBR Two component system transcriptional regu...    35   2.5  
tr|Q7VVZ5|Q7VVZ5_BORPE Two component system transcriptional regu...    35   2.5  
tr|Q7W532|Q7W532_BORPA Two component system transcriptional regu...    34   3.2  
tr|B5GNB9|B5GNB9_STRCL Putative uncharacterized protein OS=Strep...    34   3.2  
tr|B4FRS4|B4FRS4_MAIZE Lipid binding protein OS=Zea mays PE=2 SV=1     34   3.2  
tr|A9GSL7|A9GSL7_SORC5 Phosphatidylserine synthase OS=Sorangium ...    34   4.2  
tr|Q8W0R4|Q8W0R4_SORBI Putative cytochrome P450-like protein OS=...    34   4.2  
tr|A0ZS63|A0ZS63_SOLLC Cytochrome P450 OS=Solanum lycopersicum G...    33   5.5  
tr|B8JJG0|B8JJG0_MOUSE Dynein cytoplasmic 2 heavy chain 1 OS=Mus...    33   7.2  
tr|B8JJF9|B8JJF9_MOUSE Dynein cytoplasmic 2 heavy chain 1 OS=Mus...    33   7.2  
tr|Q6YSD9|Q6YSD9_ORYSJ Pr1-like protein OS=Oryza sativa subsp. j...    33   9.4  
tr|B2BXN2|B2BXN2_9ROSI Cytp450-1 OS=Cleome spinosa GN=Cytp450-1 ...    33   9.4  

>tr|A5AZR5|A5AZR5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_033123 PE=3 SV=1
          Length = 448

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = +3

Query: 300 LTIPIYSLLLLMSNISRKGAHLHQLLTPGSQGWLPIVGETLEY 428
           +T+P+  L L +   +RK     + L PGS GW PI+GETLE+
Sbjct: 10  VTLPLLFLGLFIFAFTRKSGDDDKKLPPGSLGW-PIMGETLEF 51


>tr|Q7WCL4|Q7WCL4_BORBR Two component system transcriptional
           regulatory protein OS=Bordetella bronchiseptica GN=kdpE
           PE=4 SV=1
          Length = 231

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = -3

Query: 235 VITLGLP------FLRRCKSWFYLLLRHPRPRKESEGDAARGLSSGRNPQD*SVVNLGQS 74
           V+ LGLP       LR  + W  L +     R  SEGD    L +G +        +G+ 
Sbjct: 54  VLDLGLPDEDGMALLRELRGWTELPVLVLSARS-SEGDKIAALDAGADDYLTKPFGVGEL 112

Query: 73  TTAIRAGRRRSAEGGDGNGARFGW 2
              +R   RR A GG GN A+ G+
Sbjct: 113 LARLRVLLRRHARGGAGNAAQAGF 136


>tr|Q7VVZ5|Q7VVZ5_BORPE Two component system transcriptional
           regulatory protein OS=Bordetella pertussis GN=kdpE PE=4
           SV=1
          Length = 231

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = -3

Query: 235 VITLGLP------FLRRCKSWFYLLLRHPRPRKESEGDAARGLSSGRNPQD*SVVNLGQS 74
           V+ LGLP       LR  + W  L +     R  SEGD    L +G +        +G+ 
Sbjct: 54  VLDLGLPDEDGMALLRELRGWTELPVLVLSARS-SEGDKIAALDAGADDYLTKPFGVGEL 112

Query: 73  TTAIRAGRRRSAEGGDGNGARFGW 2
              +R   RR A GG GN A+ G+
Sbjct: 113 LARLRVLLRRHARGGAGNAAQAGF 136


>tr|Q7W532|Q7W532_BORPA Two component system transcriptional
           regulatory protein OS=Bordetella parapertussis GN=kdpE
           PE=4 SV=1
          Length = 231

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = -3

Query: 235 VITLGLP------FLRRCKSWFYLLLRHPRPRKESEGDAARGLSSGRNPQD*SVVNLGQS 74
           V+ LGLP       LR  + W  L +     R  SEGD    L +G +        +G+ 
Sbjct: 54  VLDLGLPDEDGMALLRELRGWTELPVLVLSARS-SEGDKIAALDAGADDYLTKPFGVGEL 112

Query: 73  TTAIRAGRRRSAEGGDGNGARFGW 2
              +R   RR A GG GN A+ G+
Sbjct: 113 LAHLRVLLRRHARGGAGNAAQAGF 136


>tr|B5GNB9|B5GNB9_STRCL Putative uncharacterized protein
           OS=Streptomyces clavuligerus ATCC 27064 GN=SSCG_00843
           PE=4 SV=1
          Length = 682

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -3

Query: 187 YLLLRHPRPRKESEGDAARGLSSGRNPQD*SVVNLGQSTTAIRAGRRRSAEGGDGNGARF 8
           Y++++ P P +E E D  R   SGR  +       GQ   +   GR R  E G G  A  
Sbjct: 598 YVIVQDPPPEQEQEQDREREQESGRGQRSEDGGWAGQPVLSEGDGRERKPESGTGTEAEA 657

Query: 7   G 5
           G
Sbjct: 658 G 658


>tr|B4FRS4|B4FRS4_MAIZE Lipid binding protein OS=Zea mays PE=2 SV=1
          Length = 220

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 20/103 (19%)
 Frame = +2

Query: 2   PTETCSVSIAAFCRASTTCA-----DSCS*LPQINHASILRIPAA--------------- 121
           PT+ C  S+ A  RAST CA      S S    +N    +R+P A               
Sbjct: 69  PTDDCCRSLGALMRASTGCACLILTGSVSVGVPVNRTLAVRLPRACNSTSLQLQCRDASS 128

Query: 122 RQSPCSISFGFFPGPRVSKQQIKPRLASPEEGEPQRNDAASTP 250
            QSP        P P +S   + P   +    EP    A +TP
Sbjct: 129 AQSPAPGPVADAPAPSLSTAPLPPPATAAAAPEPDEAPAPATP 171


>tr|A9GSL7|A9GSL7_SORC5 Phosphatidylserine synthase OS=Sorangium
           cellulosum (strain So ce56) GN=pssA2 PE=4 SV=1
          Length = 224

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = -2

Query: 275 NVTACEAAEEL-KLRHYAGAPLPQEMQVLVLFVASTPAAPERIRRRCCKGTV 123
           NVTA E ++E  K+R+Y G P+P  + +++LF      A ER+  +   G++
Sbjct: 144 NVTAAELSDERGKVRYYEGTPIPTSLLIVLLF--GVLFAKERVHEQLWLGSI 193


>tr|Q8W0R4|Q8W0R4_SORBI Putative cytochrome P450-like protein
           OS=Sorghum bicolor GN=SB32H17.4 PE=3 SV=1
          Length = 481

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +3

Query: 291 LAVLTIPIYSLLLLM-----SNISRKGAHLHQLLTPGSQGWLPIVGETLEY 428
           LA L++ +   +LL       N  R G     LL PGS+G LP +GETLE+
Sbjct: 6   LAALSVTLLGAILLRWAFKWMNYGRTGGEEGMLLPPGSRG-LPFLGETLEF 55


>tr|A0ZS63|A0ZS63_SOLLC Cytochrome P450 OS=Solanum lycopersicum
           GN=CYP90B3 PE=2 SV=1
          Length = 491

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 309 PIYSLLLLMSNISRKGAHLHQLLTPGSQGWLPIVGETLEY 428
           PI ++L++++   RK  H  Q L PG  GW P +GET+ Y
Sbjct: 13  PILAVLIILNLFKRK--HNFQNLPPGDMGW-PFLGETIGY 49


>tr|B8JJG0|B8JJG0_MOUSE Dynein cytoplasmic 2 heavy chain 1 OS=Mus
            musculus GN=Dync2h1 PE=4 SV=1
          Length = 4313

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = -2

Query: 275  NVTACEAAEELKLRHYAGAPLPQEMQVLVLFVASTPAAPERIRRRCCKGTVERQESAGLK 96
            N    E AEEL       A LP+  Q+   F+    AAPE +R+ C +   E  ++AGL+
Sbjct: 3186 NAQVAEIAEEL-------ATLPKRAQLAAAFITYLSAAPEGLRKNCLE---EWTKAAGLE 3235

Query: 95   R 93
            +
Sbjct: 3236 K 3236