BP915898 |
Clone id |
YMU001_000079_C03 |
Library |
YMU01 |
Length |
314 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000079_C03. |
Accession |
BP915898 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL3447Contig1 |
Sequence |
CATCAATGGCTGATCCTCCATTTCTGCATCTGCATATATGTTGAACATGAAAATATGAGC TGCGACGTCCTTCTCATCACACACAACTGCATGCTTAAAAGCTTGACATGCAAGCTCAAC AATGCCCCATTTACGGCATGCACCCAGCAAACTGCATGACATCACAATATCAGGATGAAA AGGTATCTCTCTAACGATCAACAATGCTCTATCTAGCTGCCCAGCACGGCCAAGCATGTC AACCACACAAGTAAGGTGCTCGATGGACGGTATCACTTTTTGTTCACAGCACTCAATATG GAAATAGGTCTCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9M4P3 |
Definition |
sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana |
Align length |
92 |
Score (bit) |
73.2 |
E-value |
4.0e-13 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PJW3 |
Definition |
tr|A7PJW3|A7PJW3_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
101 |
Score (bit) |
86.7 |
E-value |
5.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915898|Adiantum capillus-veneris mRNA, clone: YMU001_000079_C03. (314 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PJW3|A7PJW3_VITVI Chromosome chr12 scaffold_18, whole genom... 87 5e-16 tr|A7P390|A7P390_VITVI Chromosome chr1 scaffold_5, whole genome ... 77 6e-13 tr|A5AMS4|A5AMS4_VITVI Putative uncharacterized protein OS=Vitis... 76 1e-12 tr|A5BCC4|A5BCC4_VITVI Putative uncharacterized protein OS=Vitis... 75 1e-12 tr|A7PAH3|A7PAH3_VITVI Chromosome chr14 scaffold_9, whole genome... 74 3e-12 tr|A5B3U0|A5B3U0_VITVI Putative uncharacterized protein OS=Vitis... 74 3e-12 tr|A7QUQ9|A7QUQ9_VITVI Chromosome chr1 scaffold_180, whole genom... 73 8e-12 tr|A7QF00|A7QF00_VITVI Chromosome chr16 scaffold_86, whole genom... 73 8e-12 tr|Q3LAF9|Q3LAF9_HORVU Pentatricopeptide repeat-containing prote... 72 1e-11 tr|B8LQA8|B8LQA8_PICSI Putative uncharacterized protein OS=Picea... 72 1e-11 tr|A7R678|A7R678_VITVI Chromosome undetermined scaffold_1179, wh... 72 1e-11 tr|A5BL66|A5BL66_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11 tr|Q8LQE8|Q8LQE8_ORYSJ Pentatricopeptide (PPR) repeat-containing... 71 2e-11 tr|A7PN01|A7PN01_VITVI Chromosome chr14 scaffold_21, whole genom... 71 2e-11 tr|A7P9A6|A7P9A6_VITVI Chromosome chr3 scaffold_8, whole genome ... 71 2e-11 tr|A3B7R9|A3B7R9_ORYSJ Putative uncharacterized protein OS=Oryza... 71 2e-11 tr|A2WWE8|A2WWE8_ORYSI Putative uncharacterized protein OS=Oryza... 71 2e-11 tr|Q53L25|Q53L25_ORYSJ Os11g0256100 protein OS=Oryza sativa subs... 71 3e-11 tr|A2ZD53|A2ZD53_ORYSI Putative uncharacterized protein OS=Oryza... 71 3e-11 tr|A2Q4J6|A2Q4J6_MEDTR Tetratricopeptide-like helical OS=Medicag... 71 3e-11 tr|B4FXR7|B4FXR7_MAIZE Putative uncharacterized protein OS=Zea m... 70 4e-11 tr|A7PNA8|A7PNA8_VITVI Chromosome chr1 scaffold_22, whole genome... 70 4e-11 tr|A7NYW1|A7NYW1_VITVI Chromosome chr6 scaffold_3, whole genome ... 70 4e-11 tr|A5BDU0|A5BDU0_VITVI Putative uncharacterized protein OS=Vitis... 70 4e-11 tr|Q2HUK9|Q2HUK9_MEDTR Tetratricopeptide-like helical OS=Medicag... 70 5e-11 tr|A7QGY9|A7QGY9_VITVI Chromosome chr3 scaffold_95, whole genome... 70 5e-11 tr|A7P8S8|A7P8S8_VITVI Chromosome chr3 scaffold_8, whole genome ... 70 5e-11 tr|A7P682|A7P682_VITVI Chromosome chr4 scaffold_6, whole genome ... 70 5e-11 tr|A5ATQ0|A5ATQ0_VITVI Putative uncharacterized protein OS=Vitis... 70 5e-11 tr|Q6L4I3|Q6L4I3_ORYSJ Os05g0212100 protein OS=Oryza sativa subs... 70 7e-11
>tr|A7PJW3|A7PJW3_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00018905001 PE=4 SV=1 Length = 497
Score = 86.7 bits (213), Expect = 5e-16 Identities = 43/101 (42%), Positives = 64/101 (63%) Frame = -3
Query: 306 YFHIECCEQKVIPSIEHLTCVVDMLGRAGQLDRALLIVREIPFHPDIVMSCSLLGACRKW 127 YF + K+ PSI+H +C+VD LGRAG L+ A ++R +P +PD ++ SLL ACRK Sbjct: 344 YFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKH 403
Query: 126 GIVELACQAFKHAVVCDEKDVAAHIFMFNIYADAEMEDQPL 4 G VELA +A KH V D D ++ + NIYA ++ ++ + Sbjct: 404 GNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAM 444
>tr|A7P390|A7P390_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030349001 PE=4 SV=1 Length = 585
Score = 76.6 bits (187), Expect = 6e-13 Identities = 39/94 (41%), Positives = 58/94 (61%) Frame = -3
Query: 306 YFHIECCEQKVIPSIEHLTCVVDMLGRAGQLDRALLIVREIPFHPDIVMSCSLLGACRKW 127 YF + ++P IEH C+VDML RAG+L++A+ VR++P D V+ LLGACR + Sbjct: 416 YFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIY 475
Query: 126 GIVELACQAFKHAVVCDEKDVAAHIFMFNIYADA 25 VELA A + + + K+ A ++ + NIY DA Sbjct: 476 KNVELAELALQRLIELEPKNPANYVMLSNIYGDA 509
>tr|A5AMS4|A5AMS4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018656 PE=4 SV=1 Length = 787
Score = 75.9 bits (185), Expect = 1e-12 Identities = 37/100 (37%), Positives = 60/100 (60%) Frame = -3
Query: 312 ETYFHIECCEQKVIPSIEHLTCVVDMLGRAGQLDRALLIVREIPFHPDIVMSCSLLGACR 133 + YF + + P IEH TC+V +LGR G LD+A+ ++ EIPF P +++ +LLGAC Sbjct: 536 QAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACV 595
Query: 132 KWGIVELACQAFKHAVVCDEKDVAAHIFMFNIYADAEMED 13 +EL + +H + + +D A H+ + N+YA A+ D Sbjct: 596 IHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWD 635
>tr|A5BCC4|A5BCC4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030746 PE=4 SV=1 Length = 686
Score = 75.5 bits (184), Expect = 1e-12 Identities = 39/94 (41%), Positives = 57/94 (60%) Frame = -3
Query: 306 YFHIECCEQKVIPSIEHLTCVVDMLGRAGQLDRALLIVREIPFHPDIVMSCSLLGACRKW 127 YF + ++P IEH C+VDML RAG+L++A VR++P D V+ LLGACR + Sbjct: 517 YFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIY 576
Query: 126 GIVELACQAFKHAVVCDEKDVAAHIFMFNIYADA 25 VELA A + + + K+ A ++ + NIY DA Sbjct: 577 KNVELAELALQRLIELEPKNPANYVMLSNIYGDA 610
>tr|A7PAH3|A7PAH3_VITVI Chromosome chr14 scaffold_9, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00038113001 PE=4 SV=1 Length = 778
Score = 74.3 bits (181), Expect = 3e-12 Identities = 37/96 (38%), Positives = 60/96 (62%) Frame = -3
Query: 306 YFHIECCEQKVIPSIEHLTCVVDMLGRAGQLDRALLIVREIPFHPDIVMSCSLLGACRKW 127 YFH + P +EH +CVVD++GR+GQ+ +AL ++ +PF D V+ +LL C+ Sbjct: 602 YFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIH 661
Query: 126 GIVELACQAFKHAVVCDEKDVAAHIFMFNIYADAEM 19 G VE+A +A + + +D AA++ + NIYA+A M Sbjct: 662 GNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGM 697
>tr|A5B3U0|A5B3U0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035978 PE=4 SV=1 Length = 814
Score = 74.3 bits (181), Expect = 3e-12 Identities = 37/96 (38%), Positives = 60/96 (62%) Frame = -3
Query: 306 YFHIECCEQKVIPSIEHLTCVVDMLGRAGQLDRALLIVREIPFHPDIVMSCSLLGACRKW 127 YFH + P +EH +CVVD++GR+GQ+ +AL ++ +PF D V+ +LL C+ Sbjct: 638 YFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIH 697
Query: 126 GIVELACQAFKHAVVCDEKDVAAHIFMFNIYADAEM 19 G VE+A +A + + +D AA++ + NIYA+A M Sbjct: 698 GNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGM 733
>tr|A7QUQ9|A7QUQ9_VITVI Chromosome chr1 scaffold_180, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00006945001 PE=4 SV=1 Length = 828
Score = 72.8 bits (177), Expect = 8e-12 Identities = 36/100 (36%), Positives = 59/100 (59%) Frame = -3
Query: 312 ETYFHIECCEQKVIPSIEHLTCVVDMLGRAGQLDRALLIVREIPFHPDIVMSCSLLGACR 133 + YF + + P IEH TC+V +LGR G LD+A+ ++ EIPF P +++ +LLGAC Sbjct: 577 QAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACV 636
Query: 132 KWGIVELACQAFKHAVVCDEKDVAAHIFMFNIYADAEMED 13 +EL + + + + +D A H+ + N+YA A+ D Sbjct: 637 IHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWD 676
>tr|A7QF00|A7QF00_VITVI Chromosome chr16 scaffold_86, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037221001 PE=4 SV=1 Length = 453
Score = 72.8 bits (177), Expect = 8e-12 Identities = 36/84 (42%), Positives = 53/84 (63%) Frame = -3
Query: 276 VIPSIEHLTCVVDMLGRAGQLDRALLIVREIPFHPDIVMSCSLLGACRKWGIVELACQAF 97 V PS++H TC+VD+L RAG+LD A +V++IP PD VM +LLG C WG VEL A Sbjct: 296 VTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAA 355
Query: 96 KHAVVCDEKDVAAHIFMFNIYADA 25 + + + + ++ + N+YA A Sbjct: 356 ESLIELEPNNTGNYVLLANLYAYA 379
>tr|Q3LAF9|Q3LAF9_HORVU Pentatricopeptide repeat-containing protein OS=Hordeum vulgare GN=ppr PE=4 SV=1 Length = 652
Score = 72.0 bits (175), Expect = 1e-11 Identities = 35/98 (35%), Positives = 58/98 (59%) Frame = -3
Query: 306 YFHIECCEQKVIPSIEHLTCVVDMLGRAGQLDRALLIVREIPFHPDIVMSCSLLGACRKW 127 YF K+ P++EH C+VD+LGRAG+L+ A ++ +P D + +LLGAC+ Sbjct: 399 YFFAMESTYKLRPTLEHYACMVDLLGRAGRLEEARELISSMPMPADGSVWGALLGACKIH 458
Query: 126 GIVELACQAFKHAVVCDEKDVAAHIFMFNIYADAEMED 13 VE +AFKH ++ + +V ++ M N+Y D+ +D Sbjct: 459 KNVEAGEEAFKHVIMLEPSNVGYYVLMANMYTDSGQQD 496
>tr|B8LQA8|B8LQA8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 795
Score = 72.0 bits (175), Expect = 1e-11 Identities = 37/95 (38%), Positives = 54/95 (56%) Frame = -3
Query: 306 YFHIECCEQKVIPSIEHLTCVVDMLGRAGQLDRALLIVREIPFHPDIVMSCSLLGACRKW 127 YF + + P +EH C+VD+LGRAG LD A I++ + PD + +LLGACR Sbjct: 546 YFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIH 605
Query: 126 GIVELACQAFKHAVVCDEKDVAAHIFMFNIYADAE 22 +EL QA KH D + ++ + NIYA+A+ Sbjct: 606 CNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQ 640
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