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NBDC - LSDB Archive
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BP915908
Clone id YMU001_000079_D03
Library
Length 385
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCTCAATAAAAATTGTTTGATTATCAAATAAAGCTTCCATACAGCTGCATTGATGCCAG
ACAGCATCTATGTACAAATTGAACCATGTTGGAGAATGGCAGTGAATTAGCTTGCAACTT
GAAATGCTTAAACAGCTTTCTGGAAAACAGTGCTAAAATTGTAGCTTGCCTTCCGAAATG
CCAGTACAGACTGATGTTTCAGGAGTTTCTCTGTCATGAAGGAACTTCAGCACTACATAT
AGGACAAGACTTGTTGATTTGAAGCCAGTTCTTGATACATTCTGTATGATAGTGGTGCTT
ACATGGCAAGGTTGACAAACAATCGCCTTCCTCATACTCAAACCTACAAATAACACATGG
ATCTTCGAAACTTGTGCATGAGTGG
■■Homology search results ■■ -
sp_hit_id Q9H0F5
Definition sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens
Align length 52
Score (bit) 60.8
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915908|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_D03.
         (385 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=...    61   2e-09
sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus ...    61   2e-09
sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo...    61   2e-09
sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=A...    61   2e-09
sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus...    60   3e-09
sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=...    60   4e-09
sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=...    60   4e-09
sp|Q66HG0|RNF13_RAT RING finger protein 13 OS=Rattus norvegicus ...    60   4e-09
sp|Q5RCV8|RNF13_PONAB RING finger protein 13 OS=Pongo abelii GN=...    60   4e-09
sp|O54965|RNF13_MOUSE RING finger protein 13 OS=Mus musculus GN=...    60   4e-09
sp|O43567|RNF13_HUMAN RING finger protein 13 OS=Homo sapiens GN=...    60   4e-09
sp|Q90972|RNF13_CHICK RING finger protein 13 OS=Gallus gallus GN...    60   4e-09
sp|Q0VD51|RNF13_BOVIN RING finger protein 13 OS=Bos taurus GN=RN...    60   4e-09
sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=A...    60   4e-09
sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RNF12 OS=Mus m...    59   6e-09
sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=r...    59   1e-08
sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase rnf12 OS=Xenop...    59   1e-08
sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RNF12 OS=Homo ...    59   1e-08
sp|Q5M974|RN181_XENTR RING finger protein 181 OS=Xenopus tropica...    59   1e-08
sp|Q6GPV5|RN181_XENLA RING finger protein 181 OS=Xenopus laevis ...    58   1e-08
sp|Q7ZW78|RN181_DANRE RING finger protein 181 OS=Danio rerio GN=...    58   1e-08
sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase rnf12-B OS=Xen...    58   1e-08
sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase rnf12-A OS=Xen...    58   1e-08
sp|Q4R6Y5|ZNRF4_MACFA Zinc/RING finger protein 4 OS=Macaca fasci...    58   2e-08
sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens...    58   2e-08
sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus ...    57   2e-08
sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=...    57   2e-08
sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.0...    57   3e-08
sp|Q67YI6|ATL3G_ARATH RING-H2 finger protein ATL3G OS=Arabidopsi...    56   6e-08
sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xen...    55   8e-08

>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens
           GN=RNF38 PE=1 SV=4
          Length = 515

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = -2

Query: 357 CVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEVPS*QRNS 202
           CV+C  ++E    L  LPC H +H +C+  WL+ N++CPIC A+     R+S
Sbjct: 463 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDS 514


>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus
           musculus GN=Rnf167 PE=2 SV=1
          Length = 347

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWL-QINKSCPICSAEV 223
           D C IC  EYE+GD L  LPC H YH+ C+  WL Q  K+CPIC   V
Sbjct: 228 DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275


>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo
           sapiens GN=RNF167 PE=1 SV=1
          Length = 350

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWL-QINKSCPICSAEV 223
           D C IC  EYE+GD L  LPC H YH+ C+  WL Q  K+CPIC   V
Sbjct: 228 DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275


>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680
           OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
          Length = 390

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 23/45 (51%), Positives = 27/45 (60%)
 Frame = -2

Query: 357 CVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEV 223
           C IC  EYE+G  L  LPC HH+H  CI  WL IN  CP+C   +
Sbjct: 338 CCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNI 382


>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus
           norvegicus GN=Rnf167 PE=2 SV=1
          Length = 349

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWL-QINKSCPICSAEV 223
           D C IC  EYE+GD L  LPC H YH+ C+  WL Q  K+CPIC   V
Sbjct: 228 DVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275


>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens
           GN=RNF44 PE=2 SV=1
          Length = 432

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 20/44 (45%), Positives = 30/44 (68%)
 Frame = -2

Query: 357 CVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAE 226
           CV+C  ++E    L  LPC H +HT+C+  WL+ N++CPIC A+
Sbjct: 380 CVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRAD 423


>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus
           GN=Rnf38 PE=2 SV=1
          Length = 518

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = -2

Query: 357 CVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEVPS*QRNS 202
           CV+C  ++E    L  LPC H +H +C+  WL+ N++CPIC A+     R+S
Sbjct: 466 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADASEVHRDS 517


>sp|Q66HG0|RNF13_RAT RING finger protein 13 OS=Rattus norvegicus
           GN=Rnf13 PE=2 SV=1
          Length = 380

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWL-QINKSCPICSAEVPS*QRNS 202
           D C IC  EYE+GD L  LPC H YH +C+  WL +  K+CP+C  +V   Q +S
Sbjct: 238 DVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDS 292


>sp|Q5RCV8|RNF13_PONAB RING finger protein 13 OS=Pongo abelii
           GN=RNF13 PE=2 SV=1
          Length = 381

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWL-QINKSCPICSAEVPS*QRNS 202
           D C IC  EYE+GD L  LPC H YH +C+  WL +  K+CP+C  +V   Q +S
Sbjct: 238 DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDS 292


>sp|O54965|RNF13_MOUSE RING finger protein 13 OS=Mus musculus
           GN=Rnf13 PE=2 SV=1
          Length = 381

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWL-QINKSCPICSAEVPS*QRNS 202
           D C IC  EYE+GD L  LPC H YH +C+  WL +  K+CP+C  +V   Q +S
Sbjct: 238 DVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDS 292
tr_hit_id Q6YT05
Definition tr|Q6YT05|Q6YT05_ORYSJ Os08g0548300 protein OS=Oryza sativa subsp. japonica
Align length 51
Score (bit) 84.3
E-value 3.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915908|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_D03.
         (385 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6YT05|Q6YT05_ORYSJ Os08g0548300 protein OS=Oryza sativa subs...    84   3e-15
tr|A2YXT6|A2YXT6_ORYSI Putative uncharacterized protein OS=Oryza...    84   3e-15
tr|A9STC2|A9STC2_PHYPA Predicted protein OS=Physcomitrella paten...    84   4e-15
tr|A7Q7I1|A7Q7I1_VITVI Chromosome undetermined scaffold_60, whol...    84   4e-15
tr|B6T388|B6T388_MAIZE Putative uncharacterized protein OS=Zea m...    82   1e-14
tr|B4FEA5|B4FEA5_MAIZE Putative uncharacterized protein OS=Zea m...    82   1e-14
tr|A9NZL9|A9NZL9_PICSI Putative uncharacterized protein OS=Picea...    82   1e-14
tr|Q69JZ9|Q69JZ9_ORYSJ Os09g0535100 protein OS=Oryza sativa subs...    80   5e-14
tr|B8BDV9|B8BDV9_ORYSI Putative uncharacterized protein OS=Oryza...    80   5e-14
tr|Q9LT17|Q9LT17_ARATH Genomic DNA, chromosome 3, P1 clone: MPN9...    79   1e-13
tr|Q8LG55|Q8LG55_ARATH Putative uncharacterized protein OS=Arabi...    79   1e-13
tr|B6TSW8|B6TSW8_MAIZE Protein binding protein OS=Zea mays PE=2 ...    79   1e-13
tr|B6TCR8|B6TCR8_MAIZE Protein binding protein OS=Zea mays PE=2 ...    77   3e-13
tr|Q9FSZ7|Q9FSZ7_CICAR Putative uncharacterized protein (Fragmen...    76   7e-13
tr|B7FMM8|B7FMM8_MEDTR Putative uncharacterized protein OS=Medic...    76   7e-13
tr|B7FMD6|B7FMD6_MEDTR Putative uncharacterized protein OS=Medic...    76   7e-13
tr|Q10R22|Q10R22_ORYSJ Os03g0173900 protein OS=Oryza sativa subs...    73   8e-12
tr|B8LQF2|B8LQF2_PICSI Putative uncharacterized protein OS=Picea...    73   8e-12
tr|A3AEM9|A3AEM9_ORYSJ Putative uncharacterized protein OS=Oryza...    73   8e-12
tr|A2XD30|A2XD30_ORYSI Putative uncharacterized protein OS=Oryza...    73   8e-12
tr|B4FQR1|B4FQR1_MAIZE Putative uncharacterized protein OS=Zea m...    72   1e-11
tr|A0CNR4|A0CNR4_PARTE Chromosome undetermined scaffold_22, whol...    72   1e-11
tr|A0CKN3|A0CKN3_PARTE Chromosome undetermined scaffold_2, whole...    72   1e-11
tr|B6T6D5|B6T6D5_MAIZE Protein binding protein OS=Zea mays PE=2 ...    72   1e-11
tr|A8II68|A8II68_CHLRE Predicted protein OS=Chlamydomonas reinha...    70   5e-11
tr|B6U9G8|B6U9G8_MAIZE Zinc finger, C3HC4 type family protein OS...    69   9e-11
tr|B4FDR0|B4FDR0_MAIZE Putative uncharacterized protein OS=Zea m...    69   9e-11
tr|A9PJG0|A9PJG0_POPJC Putative uncharacterized protein OS=Popul...    69   9e-11
tr|Q8L649|Q8L649_ARATH Putative uncharacterized protein AT3g6353...    69   2e-10
tr|A7NZS6|A7NZS6_VITVI Chromosome chr6 scaffold_3, whole genome ...    67   3e-10

>tr|Q6YT05|Q6YT05_ORYSJ Os08g0548300 protein OS=Oryza sativa subsp.
           japonica GN=OJ1112_E06.17 PE=2 SV=1
          Length = 305

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 34/51 (66%), Positives = 41/51 (80%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEVPS*Q 211
           + CVICR E+EEG+ L  LPCKH YH+ECI  WLQ+NK CP+CSAEVP+ Q
Sbjct: 251 EQCVICRVEFEEGESLVALPCKHSYHSECINQWLQLNKVCPMCSAEVPTSQ 301


>tr|A2YXT6|A2YXT6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30152 PE=4 SV=1
          Length = 300

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 34/51 (66%), Positives = 41/51 (80%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEVPS*Q 211
           + CVICR E+EEG+ L  LPCKH YH+ECI  WLQ+NK CP+CSAEVP+ Q
Sbjct: 246 EQCVICRVEFEEGESLVALPCKHSYHSECINQWLQLNKVCPMCSAEVPTSQ 296


>tr|A9STC2|A9STC2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_135034 PE=4 SV=1
          Length = 306

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 32/48 (66%), Positives = 40/48 (83%)
 Frame = -2

Query: 366 EDPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEV 223
           ++ CV+CR EYE+GD +  LPCKHHYH+ECI+ WLQ NK CP+CSAEV
Sbjct: 245 QEQCVVCRLEYEKGDKMLRLPCKHHYHSECIQQWLQHNKVCPVCSAEV 292


>tr|A7Q7I1|A7Q7I1_VITVI Chromosome undetermined scaffold_60, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00031855001 PE=4 SV=1
          Length = 263

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 34/49 (69%), Positives = 39/49 (79%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEVPS 217
           D CVICR +YE+G+ L+ L CKH YH+ECI NWLQINK CPICS EV S
Sbjct: 213 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLQINKVCPICSTEVSS 261


>tr|B6T388|B6T388_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 288

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 32/49 (65%), Positives = 40/49 (81%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEVPS 217
           + CVICR E++EG+ L  LPCKH YH+ECI  WLQ+NK CP+CSAEVP+
Sbjct: 234 EQCVICRVEFDEGESLVALPCKHPYHSECINQWLQLNKVCPMCSAEVPT 282


>tr|B4FEA5|B4FEA5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 287

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 32/49 (65%), Positives = 40/49 (81%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEVPS 217
           + CVICR E++EG+ L  LPCKH YH+ECI  WLQ+NK CP+CSAEVP+
Sbjct: 233 EQCVICRVEFDEGESLVALPCKHPYHSECINQWLQLNKVCPMCSAEVPT 281


>tr|A9NZL9|A9NZL9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 282

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 33/51 (64%), Positives = 39/51 (76%)
 Frame = -2

Query: 375 TSFEDPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEV 223
           +S  + CVIC  EYE GD + TLPCKH YH++CIK WLQINK CP+CS EV
Sbjct: 226 SSNSERCVICHLEYEGGDMILTLPCKHQYHSDCIKKWLQINKVCPVCSVEV 276


>tr|Q69JZ9|Q69JZ9_ORYSJ Os09g0535100 protein OS=Oryza sativa subsp.
           japonica GN=P0569E11.3 PE=2 SV=1
          Length = 325

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 33/53 (62%), Positives = 39/53 (73%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEVPS*QRN 205
           + CVICR E+E+G+ L  LPCKH YH ECI  WLQINK CP+CSAEV +   N
Sbjct: 271 EQCVICRVEFEDGESLIALPCKHSYHPECINQWLQINKVCPMCSAEVSTSDSN 323


>tr|B8BDV9|B8BDV9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32172 PE=4 SV=1
          Length = 325

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 33/53 (62%), Positives = 39/53 (73%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEVPS*QRN 205
           + CVICR E+E+G+ L  LPCKH YH ECI  WLQINK CP+CSAEV +   N
Sbjct: 271 EQCVICRVEFEDGESLIALPCKHSYHPECINQWLQINKVCPMCSAEVSTSDSN 323


>tr|Q9LT17|Q9LT17_ARATH Genomic DNA, chromosome 3, P1 clone: MPN9
           (Putative uncharacterized protein At3g19910)
           (AT3g19910/MPN9_15) OS=Arabidopsis thaliana GN=At3g19910
           PE=2 SV=1
          Length = 340

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 31/47 (65%), Positives = 38/47 (80%)
 Frame = -2

Query: 363 DPCVICRFEYEEGDCLSTLPCKHHYHTECIKNWLQINKSCPICSAEV 223
           + CVICR +YE+ + L  LPCKH YH+ECI NWL+INK CP+CSAEV
Sbjct: 286 ESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEV 332