BP915912 |
Clone id |
YMU001_000079_D07 |
Library |
YMU01 |
Length |
482 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000079_D07. |
Accession |
BP915912 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CGCGCGTCTCGCCAGTATCAAGCAGTAGCTCTAGCAGAAGAGAGCTGTGCTCGCAAGCTT CAAGCTCCGCAACTGCATGCCGAGCGTCAAACTCTAGGAAGAAGGGCATCGACCTGCGGA CAGATTTTAAGTGTTCTTACCTTACAGGAAGCCTTCATGGATCCTTCTCCGGATCTTCTC TTCGGACAGCTACACGGGACACCATCGATCAAGCCATCTCTCGTAGTAACTTTCGCAAGG GAATCGTCACAATGGTCATTCCTTTTCAAAGAGGAGATGCTCGCCAACAGCCGCTTCCAG ATTTACCTTCTTATCTCTTCAAAAATCGCATCGTGTCTCTTGGAATGTCTCTGGTGCCTT CAGTTACAGAACTGATAATGGCAGAACTACTTTACCTTCAGTATGAGGACCCTGAAAAGC CTGTTTATATGTATATAAACTCCACGGGCACTACAAAGGATGGTGAGAAACTTGGATATG AG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8LB10 |
Definition |
sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana |
Align length |
88 |
Score (bit) |
140.0 |
E-value |
3.0e-33 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915912|Adiantum capillus-veneris mRNA, clone: YMU001_000079_D07. (482 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic sub... 140 3e-33 sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic sub... 88 2e-17 sp|Q9L4P4|CLPR_SYNE7 Putative ATP-dependent Clp protease proteol... 79 1e-14 sp|P74466|CLPR_SYNY3 Putative ATP-dependent Clp protease proteol... 75 2e-13 sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic sub... 70 7e-12 sp|Q7NEW1|CLPP2_GLOVI ATP-dependent Clp protease proteolytic sub... 58 2e-08 sp|Q1MQ79|CLPP_LAWIP ATP-dependent Clp protease proteolytic subu... 56 7e-08 sp|Q2JIP1|CLPP2_SYNJB ATP-dependent Clp protease proteolytic sub... 55 1e-07 sp|Q2JV68|CLPP2_SYNJA ATP-dependent Clp protease proteolytic sub... 55 1e-07 sp|A5IJ91|CLPP_THEP1 ATP-dependent Clp protease proteolytic subu... 55 2e-07 sp|Q9WZF9|CLPP_THEMA ATP-dependent Clp protease proteolytic subu... 55 2e-07 sp|Q3ATL3|CLPP_CHLCH ATP-dependent Clp protease proteolytic subu... 55 2e-07 sp|Q7UK66|CLPP2_RHOBA ATP-dependent Clp protease proteolytic sub... 53 6e-07 sp|Q67SK0|CLPP1_SYMTH ATP-dependent Clp protease proteolytic sub... 53 6e-07 sp|Q8YXH5|CLPP1_ANASP ATP-dependent Clp protease proteolytic sub... 53 6e-07 sp|Q3B5V8|CLPP_PELLD ATP-dependent Clp protease proteolytic subu... 53 8e-07 sp|A5GFA0|CLPP_GEOUR ATP-dependent Clp protease proteolytic subu... 53 8e-07 sp|Q8RHJ8|CLPP_FUSNN ATP-dependent Clp protease proteolytic subu... 53 8e-07 sp|Q30Z79|CLPP_DESDG ATP-dependent Clp protease proteolytic subu... 53 8e-07 sp|A4XHW0|CLPP_CALS8 ATP-dependent Clp protease proteolytic subu... 53 8e-07 sp|P74467|CLPP3_SYNY3 Probable ATP-dependent Clp protease proteo... 53 8e-07 sp|Q24S49|CLPP2_DESHY ATP-dependent Clp protease proteolytic sub... 53 8e-07 sp|Q3MFR5|CLPP1_ANAVT ATP-dependent Clp protease proteolytic sub... 53 8e-07 sp|Q2LTK5|CLPP_SYNAS ATP-dependent Clp protease proteolytic subu... 52 1e-06 sp|Q3A3X5|CLPP_PELCD ATP-dependent Clp protease proteolytic subu... 52 1e-06 sp|A1VE85|CLPP_DESVV ATP-dependent Clp protease proteolytic subu... 52 1e-06 sp|Q72CE8|CLPP_DESVH ATP-dependent Clp protease proteolytic subu... 52 1e-06 sp|A1BI15|CLPP_CHLPD ATP-dependent Clp protease proteolytic subu... 52 1e-06 sp|Q6MH11|CLPP_BDEBA ATP-dependent Clp protease proteolytic subu... 52 1e-06 sp|P58276|CLPP_CLOAB ATP-dependent Clp protease proteolytic subu... 52 1e-06
>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1 Length = 305
Score = 140 bits (353), Expect = 3e-33 Identities = 67/88 (76%), Positives = 77/88 (87%) Frame = +3
Query: 219 SRSNFRKGIVTMVIPFQRGDARQQPLPDLPSYLFKNRIVSLGMSLVPSVTELIMAELLYL 398 S S ++G+VTMVIPF +G A +QP PDL SYLFKNRIV LGMSLVPSVTELI+AE LYL Sbjct: 78 SSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYL 137
Query: 399 QYEDPEKPVYMYINSTGTTKDGEKLGYE 482 QYED EKP+Y+YINSTGTTK+GEKLGY+ Sbjct: 138 QYEDEEKPIYLYINSTGTTKNGEKLGYD 165
>sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1 Length = 330
Score = 88.2 bits (217), Expect = 2e-17 Identities = 42/65 (64%), Positives = 54/65 (83%), Gaps = 1/65 (1%) Frame = +3
Query: 291 PLPDLPSYLFKNRIVSLGMSLVPSVTELIMAELLYLQYEDPEKPVYMYINSTGTTK-DGE 467 P PDLPS L RIV +GM LVP+VTEL++AEL+YLQ+ DP++P+Y+YINSTGTT+ DGE Sbjct: 118 PPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGE 177
Query: 468 KLGYE 482 +G E Sbjct: 178 TVGME 182
>sp|Q9L4P4|CLPR_SYNE7 Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1 Length = 228
Score = 78.6 bits (192), Expect = 1e-14 Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 11/93 (11%) Frame = +3
Query: 237 KGIVTMVIPFQRGDARQQPLPDLPSYLFKNRIVSLGMSLVPS----------VTELIMAE 386 + I + P+ + + P PDLPS L K RI+ LGM L S VTELI+A+ Sbjct: 3 ESIQAVQAPYYGDVSYRTPPPDLPSLLLKERIIYLGMPLFSSDDVKRQVGFDVTELIIAQ 62
Query: 387 LLYLQYEDPEKPVYMYINSTGTT-KDGEKLGYE 482 LLYL++++PEKP+Y YINSTGT+ G+ +GYE Sbjct: 63 LLYLEFDNPEKPIYFYINSTGTSWYTGDAIGYE 95
>sp|P74466|CLPR_SYNY3 Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803) GN=clpR PE=3 SV=1 Length = 225
Score = 74.7 bits (182), Expect = 2e-13 Identities = 45/91 (49%), Positives = 58/91 (63%), Gaps = 12/91 (13%) Frame = +3
Query: 246 VTMVIPFQRGD-ARQQPLPDLPSYLFKNRIVSLGMSLVPS----------VTELIMAELL 392 +T V GD A + P PDL S L K RIV LGM L S VT+LI+A+LL Sbjct: 3 ITAVQSSYYGDMAFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLL 62
Query: 393 YLQYEDPEKPVYMYINSTGTT-KDGEKLGYE 482 YLQ++DP+KP+Y YINSTGT+ G+ +G+E Sbjct: 63 YLQFDDPDKPIYFYINSTGTSWYTGDAVGFE 93
>sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1 Length = 387
Score = 69.7 bits (169), Expect = 7e-12 Identities = 30/55 (54%), Positives = 42/55 (76%) Frame = +3
Query: 297 PDLPSYLFKNRIVSLGMSLVPSVTELIMAELLYLQYEDPEKPVYMYINSTGTTKD 461 PDLPS L RI LGM +VP+VTEL++A+ ++L Y++P KP+Y+YINS GT + Sbjct: 170 PDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNE 224
>sp|Q7NEW1|CLPP2_GLOVI ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus GN=clpP2 PE=3 SV=1 Length = 218
Score = 58.2 bits (139), Expect = 2e-08 Identities = 29/53 (54%), Positives = 36/53 (67%) Frame = +3
Query: 291 PLPDLPSYLFKNRIVSLGMSLVPSVTELIMAELLYLQYEDPEKPVYMYINSTG 449 P PDLPS L RIV LG + V EL++A+LLYL+ ED KP+ +YINS G Sbjct: 25 PPPDLPSLLLNERIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINSPG 77
>sp|Q1MQ79|CLPP_LAWIP ATP-dependent Clp protease proteolytic subunit OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=clpP PE=3 SV=1 Length = 209
Score = 56.2 bits (134), Expect = 7e-08 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Frame = +3
Query: 243 IVTMVIPFQ-RGDARQQPLPDLPSYLFKNRIVSLGMSLVPSVTELIMAELLYLQYEDPEK 419 I M +P + R + D+ S L K+RIV LG + V LI A+LL+L+ +DPEK Sbjct: 4 IFNMTVPIVVENNGRNERAYDIYSRLLKDRIVLLGTEVNDQVASLICAQLLFLESQDPEK 63
Query: 420 PVYMYINSTG 449 +Y+YINS G Sbjct: 64 EIYLYINSPG 73
>sp|Q2JIP1|CLPP2_SYNJB ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1 Length = 200
Score = 55.5 bits (132), Expect = 1e-07 Identities = 26/57 (45%), Positives = 39/57 (68%) Frame = +3
Query: 279 ARQQPLPDLPSYLFKNRIVSLGMSLVPSVTELIMAELLYLQYEDPEKPVYMYINSTG 449 AR + D+ S L ++RI+ LG + + LI+A++LYL+ EDPEK +Y+YINS G Sbjct: 10 ARGERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPG 66
>sp|Q2JV68|CLPP2_SYNJA ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1 Length = 200
Score = 55.5 bits (132), Expect = 1e-07 Identities = 26/57 (45%), Positives = 39/57 (68%) Frame = +3
Query: 279 ARQQPLPDLPSYLFKNRIVSLGMSLVPSVTELIMAELLYLQYEDPEKPVYMYINSTG 449 AR + D+ S L ++RI+ LG + + LI+A++LYL+ EDPEK +Y+YINS G Sbjct: 10 ARGERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPG 66
>sp|A5IJ91|CLPP_THEP1 ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1 Length = 203
Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +3
Query: 237 KGIVTMVIPFQ-RGDARQQPLPDLPSYLFKNRIVSLGMSLVPSVTELIMAELLYLQYEDP 413 K I+ +P R + D+ S L K+RIV LG + V L++A+LL+L+ EDP Sbjct: 6 KKIIDQYVPIVVESTGRYERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDP 65
Query: 414 EKPVYMYINSTG 449 +K VY+YINS G Sbjct: 66 DKDVYLYINSPG 77
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RQL9 |
Definition |
tr|A9RQL9|A9RQL9_PHYPA ATP-dependent Clp protease proteolytic subunit OS=Physcomitrella patens subsp. patens |
Align length |
88 |
Score (bit) |
156.0 |
E-value |
5.0e-37 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) |