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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915917
Clone id YMU001_000079_E01
Library
Length 288
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGTTTCGTGCTCTGTGGTCCGTGCGAGATCTCGGCATGGATTTGGTGTGTGGAAAACGCT
ACTCCGTGGTGGGAATGACCCGTCTCATGGGTTGGGGTTTAACCTCCCTTCTGGCCCGTT
TGTTCACGGCAGGTGCTGATGCTCTTTGTGGACAGGCTGATGGTGCTACGCTCCCCATAA
AAGCCTGGGTTCGGATCTTCAGTTCGTCTCTCTGATGCGAGGTGATGGAGCTTGCATGAT
CCCCCCTTATGTGATTGCTACTGGTATGTGTGTAAACCCTTTTTTGTC
■■Homology search results ■■ -
sp_hit_id Q5ZMJ9
Definition sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1 OS=Gallus gallus
Align length 62
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915917|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_E01.
         (288 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein ...    31   1.7  
sp|Q68DN1|CB016_HUMAN Uncharacterized protein C2orf16 OS=Homo sa...    31   2.2  
sp|Q9RV23|TILS_DEIRA tRNA(Ile)-lysidine synthase OS=Deinococcus ...    30   4.8  
sp|Q5R5Q2|SRRM1_PONAB Serine/arginine repetitive matrix protein ...    30   4.8  
sp|Q8IYB3|SRRM1_HUMAN Serine/arginine repetitive matrix protein ...    30   4.8  
sp|Q4R834|SIRT2_MACFA NAD-dependent deacetylase sirtuin-2 OS=Mac...    29   6.3  
sp|A1U7J3|MNME_MARAV tRNA modification GTPase mnmE OS=Marinobact...    29   6.3  
sp|Q6DE84|MAFB_XENLA Transcription factor MafB OS=Xenopus laevis...    26   7.8  
sp|P23246|SFPQ_HUMAN Splicing factor, proline- and glutamine-ric...    29   8.2  
sp|P36625|REC7_SCHPO Meiotic recombination protein rec7 OS=Schiz...    29   8.3  
sp|Q9Y613|FHOD1_HUMAN FH1/FH2 domain-containing protein 1 OS=Hom...    29   8.3  
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium l...    25   9.9  

>sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1
           OS=Gallus gallus GN=SRRM1 PE=2 SV=1
          Length = 888

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -3

Query: 172 SVAPSACPQRASAPAVNKRARREVKPQPMRRVIPTTE*RFP-----HTKSMPRSRTDHRA 8
           + +P   P+R ++P+   + R    P P +R  P  + R P     H K  P SR++   
Sbjct: 607 TASPPPPPKRRASPSPQSKRRVSHSPPPKQRSSPAAKRRSPSISSKHRKGSPPSRSNRET 666

Query: 7   RN 2
           R+
Sbjct: 667 RS 668


>sp|Q68DN1|CB016_HUMAN Uncharacterized protein C2orf16 OS=Homo sapiens
            GN=C2orf16 PE=1 SV=2
          Length = 1984

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 287  TKKGLHTYQ*QSHKGGSCKLHHLASERRTEDPN 189
            +++GLH+   +SH+G S + HH  SER    P+
Sbjct: 1626 SERGLHSPSQRSHRGPSQRRHHSPSERSHRSPS 1658


>sp|Q9RV23|TILS_DEIRA tRNA(Ile)-lysidine synthase OS=Deinococcus
           radiodurans GN=tilS PE=3 SV=2
          Length = 582

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 82  VSWVGV*PPFWPVCSRQVLMLFVDRL 159
           V WVGV PP W V +R+ L L  D L
Sbjct: 379 VQWVGVQPPLWAVGARESLGLPADPL 404


>sp|Q5R5Q2|SRRM1_PONAB Serine/arginine repetitive matrix protein 1
           OS=Pongo abelii GN=SRRM1 PE=2 SV=1
          Length = 917

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -3

Query: 172 SVAPSACPQRASAPAVNKRARREVKPQPMRRVIPTTE*RFP-----HTKSMPRSRTDHRA 8
           + +P   P+R ++P+   + R    P P +R  P T+ R P     H K    SR+   A
Sbjct: 628 TASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREA 687

Query: 7   RN 2
           R+
Sbjct: 688 RS 689


>sp|Q8IYB3|SRRM1_HUMAN Serine/arginine repetitive matrix protein 1
           OS=Homo sapiens GN=SRRM1 PE=1 SV=2
          Length = 904

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -3

Query: 172 SVAPSACPQRASAPAVNKRARREVKPQPMRRVIPTTE*RFP-----HTKSMPRSRTDHRA 8
           + +P   P+R ++P+   + R    P P +R  P T+ R P     H K    SR+   A
Sbjct: 614 TASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREA 673

Query: 7   RN 2
           R+
Sbjct: 674 RS 675


>sp|Q4R834|SIRT2_MACFA NAD-dependent deacetylase sirtuin-2 OS=Macaca
           fascicularis GN=SIRT2 PE=2 SV=1
          Length = 389

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -1

Query: 153 VHKEHQHLP*TNGPEGRLNPNP*DGSFPPRSSVFHTPNPCRDLARTTEHE 4
           V +EH  +   +G E    PNP   + P +S     P P +D ARTTE E
Sbjct: 345 VRREHASIDAQSGAEA---PNPSTSASPRKS-----PPPAQDEARTTERE 386


>sp|A1U7J3|MNME_MARAV tRNA modification GTPase mnmE OS=Marinobacter
           aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=mnmE
           PE=3 SV=1
          Length = 456

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +3

Query: 72  GMTRLMGWGLTSLLARLFTAGADALCGQADGATLPIKAWVRIFSS 206
           G T+L G+G   LLA    A  DAL G+  G   P +   +IFSS
Sbjct: 408 GQTQLEGYGAGELLAEDLRAAQDAL-GEITGHLTPDELLGKIFSS 451


>sp|Q6DE84|MAFB_XENLA Transcription factor MafB OS=Xenopus laevis
           GN=mafb PE=2 SV=1
          Length = 313

 Score = 25.8 bits (55), Expect(2) = 7.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 174 GA*HHQPVHKEHQHLP*TNGPEG 106
           G  HH P H +HQH   +  P G
Sbjct: 152 GLPHHHPHHHQHQHHQTSPSPSG 174



 Score = 21.9 bits (45), Expect(2) = 7.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 89  HETGHSHHGVAFSTHQIHAEISHGPQS 9
           H+T  S  G + S+ Q+H +  H   S
Sbjct: 166 HQTSPSPSGSSSSSQQLHHQQQHSSSS 192


>sp|P23246|SFPQ_HUMAN Splicing factor, proline- and glutamine-rich
           OS=Homo sapiens GN=SFPQ PE=1 SV=2
          Length = 707

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 192 EPRLLWGA*HHQPVHKEHQHLP*TNGPEGR 103
           EPR   G  HH P H++H   P   GP GR
Sbjct: 240 EPR--GGRQHHPPYHQQHHQGPPPGGPGGR 267


>sp|P36625|REC7_SCHPO Meiotic recombination protein rec7
           OS=Schizosaccharomyces pombe GN=rec7 PE=2 SV=2
          Length = 339

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
 Frame = -3

Query: 262 SSNHIRGDHASSITSHQRDELKIRTQAFMGSVA--------PSACPQRASAPAVNKRARR 107
           SS+  +  + S   S+   EL +   A+  S A        PS  P   +A      +  
Sbjct: 123 SSSEKKQFNNSQSQSNNSQELSLMNNAYNKSSAQQPNLLLQPSYIPMTQTATTAVNNSTN 182

Query: 106 EVKPQPMRRVIPTTE*RFPHTKSMPRSRTD 17
            V P P++ V+P  E  F +T  + R R D
Sbjct: 183 YVNPAPLQHVMPNAE-IFSNTPPLKRFRGD 211
tr_hit_id Q2HIE2
Definition tr|Q2HIE2|Q2HIE2_CHAGB Putative uncharacterized protein OS=Chaetomium globosum
Align length 25
Score (bit) 38.1
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915917|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_E01.
         (288 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2HIE2|Q2HIE2_CHAGB Putative uncharacterized protein OS=Chaet...    38   0.22 
tr|B0DER7|B0DER7_LACBS Predicted protein OS=Laccaria bicolor (st...    35   1.4  
tr|A1TJ77|A1TJ77_ACIAC Malate synthase G OS=Acidovorax avenae su...    34   3.2  
tr|A7K683|A7K683_9VIBR Oxaloacetate decarboxylase alpha subunit ...    33   5.5  
tr|B0CWH8|B0CWH8_LACBS Predicted protein OS=Laccaria bicolor (st...    33   5.5  
tr|B0CWG1|B0CWG1_LACBS Predicted protein OS=Laccaria bicolor (st...    33   5.5  
tr|Q0RKW2|Q0RKW2_FRAAA Putative uncharacterized protein OS=Frank...    33   7.1  
tr|B0DJJ5|B0DJJ5_LACBS Predicted protein OS=Laccaria bicolor (st...    33   9.3  
tr|Q1D5H8|Q1D5H8_MYXXD TonB family protein OS=Myxococcus xanthus...    33   9.3  
tr|Q4WTN3|Q4WTN3_ASPFU Seryl-tRNA synthetase OS=Aspergillus fumi...    33   9.3  
tr|B0Y360|B0Y360_ASPFC Seryl-tRNA synthetase OS=Aspergillus fumi...    33   9.3  

>tr|Q2HIE2|Q2HIE2_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_00012 PE=4 SV=1
          Length = 346

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 17/25 (68%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +2

Query: 44  GVWKTLLRGGNDPSHGLG-FNLPSG 115
           GVWKT L+GG DP +G G FNLP G
Sbjct: 78  GVWKTNLQGGGDPGNGAGRFNLPGG 102


>tr|B0DER7|B0DER7_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_328401 PE=4 SV=1
          Length = 315

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = -3

Query: 253 HIRGDHASSITSHQRDELKIRTQAFMGSVAPSACPQRASAPAVNKRARREVKPQ--PMRR 80
           H   +H  + ++H+ D+ + R       + PS  P     P     ARR  K    P RR
Sbjct: 126 HGHDNHPRTTSAHRHDKQERRGTV----MTPSHLPTTTITPTTTNDARRPRKTPSTPKRR 181

Query: 79  VIPTTE*RFPHTKSMPRSRTDHRAR 5
             PT   + P T S   +  DHR R
Sbjct: 182 PPPTKNTQRPQTTSATHANDDHRPR 206


>tr|A1TJ77|A1TJ77_ACIAC Malate synthase G OS=Acidovorax avenae
          subsp. citrulli (strain AAC00-1) GN=Aave_0408 PE=3 SV=1
          Length = 766

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 81 GSFPPRSSVFHTPNPCRDLARTTEH 7
          G FPPR+S+FH PNP     RT+ H
Sbjct: 13 GDFPPRTSLFHPPNPPTMTDRTSVH 37


>tr|A7K683|A7K683_9VIBR Oxaloacetate decarboxylase alpha subunit
           (Fragment) OS=Vibrio sp. Ex25 GN=oadA PE=4 SV=1
          Length = 550

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 205 ELKIRTQAFMGSVAPSACPQRASAPAVNKRARREVKPQPM 86
           E+++  Q  + SVAPSA P +++AP+    A  E  P P+
Sbjct: 493 EVEVGPQGELTSVAPSAAPAKSTAPSAPSSASAEAVPAPL 532


>tr|B0CWH8|B0CWH8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_322496 PE=4 SV=1
          Length = 283

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 15  WSVRDLGMDLVCGKRYSVVGMTRLMGWGLTSLLARLFTAGADALCGQADGAT 170
           W   DLG   +  K + V  +  ++ + L+SLL  L  +  DA CG +   T
Sbjct: 102 WKAHDLGSYSILAKHHEVTDIIYILSFTLSSLLPELMQSLTDATCGLSPKTT 153


>tr|B0CWG1|B0CWG1_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_322481 PE=4 SV=1
          Length = 237

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 15  WSVRDLGMDLVCGKRYSVVGMTRLMGWGLTSLLARLFTAGADALCGQADGAT 170
           W   DLG   +  K + V  +  ++ + L+SLL  L  +  DA CG +   T
Sbjct: 56  WKAHDLGSYSILAKHHEVTDIIYILSFTLSSLLPELMQSLTDATCGLSPKTT 107


>tr|Q0RKW2|Q0RKW2_FRAAA Putative uncharacterized protein OS=Frankia
           alni (strain ACN14a) GN=FRAAL3199 PE=4 SV=1
          Length = 444

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 165 HHQPVHKEHQHLP*TNGPEGRLNPNP*DG-SFPPRSSVFHTPNPCRDLARTTEHET 1
           HH  +H EH HL  T  P+G +     DG +      +   P P   LAR T H T
Sbjct: 367 HHHAIHDEHIHLDRT--PDGTVTARIPDGRALTDGPPILPGPEPATMLARATRHVT 420


>tr|B0DJJ5|B0DJJ5_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_294874 PE=4 SV=1
          Length = 274

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 34  AWIWCVENATPWWE*PVSWVGV*PPFWPVCSRQVLMLFVDRLMVLRSP*KPGFGSSVR 207
           AW  C++  TPWW             W      +L++   R++ +R P K    SSVR
Sbjct: 218 AWFHCLDTITPWW------------IWIQGVEHILLVCCIRMLAVRWPKKTSENSSVR 263


>tr|Q1D5H8|Q1D5H8_MYXXD TonB family protein OS=Myxococcus xanthus
           (strain DK 1622) GN=MXAN_3915 PE=4 SV=1
          Length = 299

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 211 RDELKIRTQAFMGSVAPSACPQRASAPAVNKRARREVKPQPMRRVIPT 68
           R+E ++   AF     P       + PA  K  +R+ +P+P +RV+PT
Sbjct: 77  REEPELVLLAFAAPPPPPPAGGGGAQPAAKKEVQRQARPKPAQRVMPT 124


>tr|Q4WTN3|Q4WTN3_ASPFU Seryl-tRNA synthetase OS=Aspergillus
           fumigatus GN=AFUA_5G05490 PE=3 SV=1
          Length = 474

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 97  PQPMRRVIPTTE*RFPHTKSMPRSRTDHRARN 2
           P+P+R+ IP      P+TK +P+  T H++++
Sbjct: 421 PEPLRKYIPGAPEFLPYTKDLPKDTTSHKSKS 452