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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915921
Clone id YMU001_000079_E05
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTATCTAGAGGCTTTTCCTCTCTCTTTGGACACTGATCCAAAATGTGCCTCGCCTCTCC
GCAACCATAGCAATTTCCATGCCTGAAATACATTGCCTTTTGCTCGACAAACATCTAAGA
AATAGTAGACTTCTTCCGTTATACTAACTTCTTGCCATTCTTCGTCTCTGCAGTCTTGAA
TGCCAAAGCACACGTTTGAAATTCAATGAGCCTGTAAGCAATTCCAATATAAGCTGCAAA
ATACTGCAAGACCTATGCTTCAAGCAATAACTTTGTAGCTAGTTGGGTAAGCCACAACAA
CAATGCTCCATCTAATCCTTTGGAGACACCTTCCTGAAAGAATCTCCCAAAAAGAAGGTA
TCCCAAAATCTCTAGTTGTACGTGAAAAGTGTATCCATAATCCTCCTCTGTCATCCTAAG
ATGATTACAAGCCATCAAAACTTTGACTTCATACTTTGGTGTCAACCACAATGATGATAA
TAGTCACTTGAACCCCACACAACTGCAAGGT
■■Homology search results ■■ -
sp_hit_id A7J1T0
Definition sp|A7J1T0|M313B_XENLA Mitogen-activated protein kinase kinase kinase 13-B OS=Xenopus laevis
Align length 42
Score (bit) 31.6
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915921|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_E05.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7J1T0|M313B_XENLA Mitogen-activated protein kinase kinase ki...    32   2.2  
sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-...    31   3.8  
sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding moti...    31   3.8  
sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding moti...    31   3.8  
sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding moti...    31   3.8  
sp|P20876|POL_HV2ST Gag-Pol polyprotein OS=Human immunodeficienc...    30   5.0  
sp|Q7VPM2|OXAA_HAEDU Inner membrane protein oxaA OS=Haemophilus ...    30   5.0  
sp|P20874|GAG_HV2ST Gag polyprotein OS=Human immunodeficiency vi...    30   5.0  
sp|Q6DR03|ZDHC3_ARATH Probable S-acyltransferase At2g33640 OS=Ar...    30   6.5  
sp|B0R1D5|SZ12B_DANRE Polycomb protein suz12-B OS=Danio rerio GN...    30   6.5  
sp|P19505|POL_SIVSP Gag-Pol polyprotein OS=Simian immunodeficien...    30   6.5  
sp|P17757|POL_HV2D1 Gag-Pol polyprotein OS=Human immunodeficienc...    30   6.5  
sp|P19504|GAG_SIVSP Gag polyprotein OS=Simian immunodeficiency v...    30   6.5  
sp|Q89928|POL_HV2EH Gag-Pol polyprotein OS=Human immunodeficienc...    30   8.5  
sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficienc...    30   8.5  
sp|Q74230|GAG_HV2EH Gag polyprotein OS=Human immunodeficiency vi...    30   8.5  
sp|P15832|GAG_HV2D2 Gag polyprotein OS=Human immunodeficiency vi...    30   8.5  

>sp|A7J1T0|M313B_XENLA Mitogen-activated protein kinase kinase
           kinase 13-B OS=Xenopus laevis GN=map3k13-B PE=2 SV=1
          Length = 961

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = -1

Query: 394 IHFSRTTRDFGIPSFWEILSGRCLQRIRWSIVVVAYPTSYKV 269
           IHFSR+    G   F E L G CL+ + W+I+  AY T YK+
Sbjct: 119 IHFSRSRSGSGNGGFLEGLFG-CLRPV-WNIIGKAYSTDYKL 158


>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding
           motif-containing protein 1 OS=Rattus norvegicus GN=Zcrb1
           PE=2 SV=1
          Length = 217

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 90  YFRHGNCYGCGEARHILDQCPK 25
           YF    CY CGE+ H+   CPK
Sbjct: 101 YFDKSKCYECGESGHLSYACPK 122


>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding
           motif-containing protein 1 OS=Mus musculus GN=Zcrb1 PE=1
           SV=1
          Length = 217

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 90  YFRHGNCYGCGEARHILDQCPK 25
           YF    CY CGE+ H+   CPK
Sbjct: 101 YFDKSKCYECGESGHLSYACPK 122


>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding
           motif-containing protein 1 OS=Homo sapiens GN=ZCRB1 PE=1
           SV=2
          Length = 217

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 90  YFRHGNCYGCGEARHILDQCPK 25
           YF    CY CGE+ H+   CPK
Sbjct: 101 YFDKSKCYECGESGHLSYACPK 122


>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding
           motif-containing protein 1 OS=Bos taurus GN=ZCRB1 PE=2
           SV=1
          Length = 217

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 90  YFRHGNCYGCGEARHILDQCPK 25
           YF    CY CGE+ H+   CPK
Sbjct: 101 YFDKSKCYECGESGHLSYACPK 122


>sp|P20876|POL_HV2ST Gag-Pol polyprotein OS=Human immunodeficiency
           virus type 2 (isolate ST subtype A) GN=gag-pol PE=3 SV=3
          Length = 1463

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 84  RHGNCYGCGEARHILDQCPKRE 19
           R   C+ CG+A HI+ +CP+R+
Sbjct: 408 RRQGCWKCGKAGHIMAKCPERQ 429


>sp|Q7VPM2|OXAA_HAEDU Inner membrane protein oxaA OS=Haemophilus
           ducreyi GN=oxaA PE=3 SV=1
          Length = 536

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 483 LLSSLWLTPKYEVKVLMACNHLRMTEEDYGYTFHVQLEILGYLLF 349
           + S LW  PK + ++  A  HL +T  DYG+ + +   +   L+F
Sbjct: 294 ITSQLWTGPKDQKEMAQAATHLELT-VDYGWAWFIAKPLFWLLIF 337


>sp|P20874|GAG_HV2ST Gag polyprotein OS=Human immunodeficiency virus
           type 2 (isolate ST subtype A) GN=gag PE=3 SV=3
          Length = 521

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 84  RHGNCYGCGEARHILDQCPKRE 19
           R   C+ CG+A HI+ +CP+R+
Sbjct: 408 RRQGCWKCGKAGHIMAKCPERQ 429


>sp|Q6DR03|ZDHC3_ARATH Probable S-acyltransferase At2g33640
           OS=Arabidopsis thaliana GN=At2g33640 PE=2 SV=1
          Length = 565

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 190 CFGIQDCRDEEWQEVSITEEVYYFLDVCRAKGNVF 86
           C  IQDCR +  QE S  +E   F  +C A+  +F
Sbjct: 122 CLVIQDCRRDTQQEQSNEQEEALFCSLCNAEVRMF 156


>sp|B0R1D5|SZ12B_DANRE Polycomb protein suz12-B OS=Danio rerio
           GN=suz12b PE=2 SV=1
          Length = 682

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 178 QDCRDEEWQEVSITEEVYYFLDVCRAKGNVFQAWKLLWLRRG 53
           +D RD EW +   T ++  F DV   +  V + W L  ++ G
Sbjct: 544 EDERDPEWLQEKTTTQIEEFTDVNEGEKEVMKLWNLHVMKNG 585
tr_hit_id Q1JSC3
Definition tr|Q1JSC3|Q1JSC3_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii RH
Align length 29
Score (bit) 34.7
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915921|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_E05.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1JSC3|Q1JSC3_TOXGO Putative uncharacterized protein OS=Toxop...    35   2.8  
tr|B6KV24|B6KV24_TOXGO Putative uncharacterized protein OS=Toxop...    35   2.8  
tr|Q2QS61|Q2QS61_ORYSJ Retrotransposon protein, putative, Ty3-gy...    33   8.1  
tr|A5C5Y9|A5C5Y9_VITVI Putative uncharacterized protein OS=Vitis...    33   8.1  

>tr|Q1JSC3|Q1JSC3_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii RH GN=TgIb.2290 PE=4 SV=1
          Length = 712

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 108 VEQKAMYFRHGNCYGCGEARHILDQCPKR 22
           +EQ+A  F   NCY CG+  HI   CP R
Sbjct: 681 LEQQAQRFADKNCYVCGKIGHIARDCPSR 709


>tr|B6KV24|B6KV24_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_121560 PE=4 SV=1
          Length = 717

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 108 VEQKAMYFRHGNCYGCGEARHILDQCPKR 22
           +EQ+A  F   NCY CG+  HI   CP R
Sbjct: 686 LEQQAQRFADKNCYVCGKIGHIARDCPSR 714


>tr|Q2QS61|Q2QS61_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g25220 PE=4 SV=1
          Length = 583

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 78  GNCYGCGEARHILDQCPK 25
           G+CY CGE  H  D+CPK
Sbjct: 363 GSCYNCGEHGHFADKCPK 380


>tr|A5C5Y9|A5C5Y9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_013880 PE=4 SV=1
          Length = 230

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 105 EQKAMYFRHGNCYGCGEARHILDQCPKRE 19
           E +  Y   G C+GCG+ RH++  CP+ +
Sbjct: 75  ESRPCYREIGACFGCGKQRHMVRDCPENK 103