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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915928
Clone id YMU001_000079_F01
Library
Length 427
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGCAAACCAGGTTGGCACCATCCTTAACAGCATAGAAAACGATGCGGCTTGGGATGGAG
CTAGAGTTTGCTTGCAGAGGAAAGATTTCATGATGAACCTTCGAGTAAGCGACTTCGCAT
GCAGTTAGAGGATACCAATGTGACGGGGGAGGAACCTACCAGGAACAGTTGTGCCTCTAT
GAGCAATAACAGCCTTGTGCAAGCAGAGAGCTCCTTCCATAATCATGGCTTCGAGGCTGG
CCAAGATGCAGTAAAAGCTTTTCGAGAGCAAGTTCTGGATAAGAGTTTTGGGCTAGGCAG
GGGGAAAGATTTTCCATCATGTGAAGTCCTGCCTGGTCAAAGTTAGAATGATGAAGCTGT
AGAGGTAACAATATCGCGTAAGACGCAGGGCAAGCAATGCAATGGTGACTGTGTGGAGAG
ATGAAAG
■■Homology search results ■■ -
sp_hit_id Q5PQX1
Definition sp|Q5PQX1|TOIP1_RAT Torsin-1A-interacting protein 1 OS=Rattus norvegicus
Align length 66
Score (bit) 30.4
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915928|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_F01.
         (427 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5PQX1|TOIP1_RAT Torsin-1A-interacting protein 1 OS=Rattus no...    30   3.1  
sp|Q9SYI3|MDR5_ARATH Putative multidrug resistance protein 5 OS=...    30   4.1  
sp|Q3AZE8|AMPA_SYNS9 Probable cytosol aminopeptidase OS=Synechoc...    30   5.3  
sp|Q92540|SMG7_HUMAN Protein SMG7 OS=Homo sapiens GN=SMG7 PE=1 SV=2    29   9.1  
sp|A1SAC7|RAPA_SHEAM RNA polymerase-associated protein rapA OS=S...    29   9.1  
sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate ...    29   9.1  
sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate ...    29   9.1  
sp|P19579|CAPA_BACAN Capsule biosynthesis protein capA OS=Bacill...    29   9.1  

>sp|Q5PQX1|TOIP1_RAT Torsin-1A-interacting protein 1 OS=Rattus
           norvegicus GN=Tor1aip1 PE=1 SV=1
          Length = 583

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
 Frame = +2

Query: 71  LAEERFHDEPSSKRLRMQL--------EDTNVTGEEPTRNSCASMSNNSLVQAESSFHNH 226
           L+E+R  DEPSS+ +  Q          +T+V  E+P  N C     +    A    H +
Sbjct: 156 LSEDRGEDEPSSQPVTSQTVSKKTVRTPETSVMSEDPISNLCRPPLRSPRPDASIVQHIN 215

Query: 227 GFEAGQ 244
            FE G+
Sbjct: 216 PFEEGE 221


>sp|Q9SYI3|MDR5_ARATH Putative multidrug resistance protein 5
           OS=Arabidopsis thaliana GN=MDR5 PE=3 SV=1
          Length = 1230

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 89  HDEPSSKRLRMQ---LEDTNVTGEEPTRNSCASMSNNSLVQAESSFHNHGFEAGQDAVKA 259
           H+   S+ LR+Q    E   +   + + +S +S  NNS  Q + SF   G  AGQD+ K 
Sbjct: 580 HEGAYSQLLRLQEINKESKRLEISDGSISSGSSRGNNSTRQDDDSFSVLGLLAGQDSTKM 639

Query: 260 FREQVLDKSF 289
            +E     SF
Sbjct: 640 SQELSQKVSF 649


>sp|Q3AZE8|AMPA_SYNS9 Probable cytosol aminopeptidase
           OS=Synechococcus sp. (strain CC9902) GN=pepA PE=3 SV=1
          Length = 490

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
 Frame = +2

Query: 17  HHP*QHRKRCGLGWS*SLLAEERFHDEPSSKRLRMQLE-----DTNVTGEEPTRNSCASM 181
           HHP    +        SL A++RF  EP  +RL   LE      +   G EP   +CA +
Sbjct: 114 HHPDHAARISAEAVRLSLYADQRFQKEPEERRLPTALELIGLPASAAAGLEPVNATCAGV 173


>sp|Q92540|SMG7_HUMAN Protein SMG7 OS=Homo sapiens GN=SMG7 PE=1 SV=2
          Length = 1137

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
 Frame = +2

Query: 92  DEPSSKRLRMQLEDTNVTGEEPTRNSCASMSNNSLVQAESSFHN--HGFEAGQDAVKAFR 265
           ++PS  +  + L++T+V        S A+  +  L    S+  N  +  + G+  V  F+
Sbjct: 495 EDPSEAKENLILQETSVI------ESLAADGSPGLKSVLSTSRNLSNNCDTGEKPVVTFK 548

Query: 266 EQVLDKSFGLGRGKDFPSCEVLPGQS*NDEAVEVTIS--------RKTQGKQC 400
           E +  +     +G+ FP  EV    S   + + VT +        RKT+ K+C
Sbjct: 549 ENIKTREVNRDQGRSFPPKEVRRDYS---KGITVTKNDGKKDNNKRKTETKKC 598


>sp|A1SAC7|RAPA_SHEAM RNA polymerase-associated protein rapA
           OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
           GN=rapA PE=3 SV=1
          Length = 967

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 113 LRMQLEDTNVTGEEPTRNSCASMSNNSLVQAESSFHNHGFEAGQDAVKAFR 265
           L  +L D + TG    RNS AS+        +  FH+HGFE  +  V A R
Sbjct: 404 LLQELLDRHGTGRVLFRNSRASVKGFP----KREFHSHGFELPEQYVTAMR 450


>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate
            proteoglycan core protein OS=Mus musculus GN=Hspg2 PE=1
            SV=1
          Length = 3707

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 426  FHLSTQSPLHCLPCVLRDIVTSTASS 349
            FHLS  +P  CLPC    +    ASS
Sbjct: 1312 FHLSASNPEGCLPCFCMGVTQQCASS 1337


>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate
            proteoglycan core protein OS=Homo sapiens GN=HSPG2 PE=1
            SV=3
          Length = 4391

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 426  FHLSTQSPLHCLPCVLRDIVTSTASS 349
            FHLS  +P  CLPC    I    ASS
Sbjct: 1312 FHLSASNPDGCLPCFCMGITQQCASS 1337


>sp|P19579|CAPA_BACAN Capsule biosynthesis protein capA OS=Bacillus
           anthracis GN=capA PE=2 SV=2
          Length = 411

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/94 (20%), Positives = 47/94 (50%)
 Frame = +2

Query: 68  LLAEERFHDEPSSKRLRMQLEDTNVTGEEPTRNSCASMSNNSLVQAESSFHNHGFEAGQD 247
           +L E++ + + + K + +  ++  V   +    +  +++NN +        ++G +  +D
Sbjct: 108 VLLEDKKNYQKADKNIHLSAKEETVKAVKEAGFTVLNLANNHMT-------DYGAKGTKD 160

Query: 248 AVKAFREQVLDKSFGLGRGKDFPSCEVLPGQS*N 349
            +KAF+E  LD    +G G++F   + +  Q+ N
Sbjct: 161 TIKAFKEADLDY---VGAGENFKDVKNIVYQNVN 191
tr_hit_id Q6P7I1
Definition tr|Q6P7I1|Q6P7I1_XENLA MGC68578 protein OS=Xenopus laevis
Align length 35
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915928|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_F01.
         (427 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6P7I1|Q6P7I1_XENLA MGC68578 protein OS=Xenopus laevis GN=chm...    33   5.5  
tr|Q9GRV5|Q9GRV5_CAEEL Putative uncharacterized protein trp-4 OS...    33   7.2  
tr|Q4UFK4|Q4UFK4_THEAN Putative uncharacterized protein OS=Theil...    33   7.2  
tr|Q6RKJ7|Q6RKJ7_BOTFU Polyketide synthase OS=Botryotinia fuckel...    33   7.2  

>tr|Q6P7I1|Q6P7I1_XENLA MGC68578 protein OS=Xenopus laevis GN=chm
           PE=2 SV=1
          Length = 643

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -1

Query: 253 YCILASLEAMIMEGALCLHKAVIAHRGTTVPGRFL 149
           YC+  SLE ++++G   L KAVI HRG  V  ++L
Sbjct: 387 YCLHHSLECLVVDGDSKLCKAVIDHRGKRVDCKYL 421


>tr|Q9GRV5|Q9GRV5_CAEEL Putative uncharacterized protein trp-4
           OS=Caenorhabditis elegans GN=trp-4 PE=4 SV=3
          Length = 1924

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +2

Query: 65  SLLAEERFHDEPSSKRLRMQLEDTNVTGEEPTRNSCASMSNNSLVQAESSFH---NHGFE 235
           SL +    H+E SS+ L M    T +      R+  A++ +       S F    NHGF 
Sbjct: 297 SLTSHASSHEEMSSEDLAMADPQTKIL-YFAKRDEWANVESEIETIKRSDFSMADNHGFT 355

Query: 236 AGQDAVKAFREQVLDKSFGLGRGKDF 313
           A   AVKA ++Q++DK    G   D+
Sbjct: 356 AFLLAVKAGKDQIVDKMIRKGARVDY 381


>tr|Q4UFK4|Q4UFK4_THEAN Putative uncharacterized protein OS=Theileria
            annulata GN=TA15580 PE=4 SV=1
          Length = 1905

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 24/86 (27%), Positives = 35/86 (40%)
 Frame = +2

Query: 128  EDTNVTGEEPTRNSCASMSNNSLVQAESSFHNHGFEAGQDAVKAFREQVLDKSFGLGRGK 307
            EDT +T  + T NS  S +N  L+    +                 E  +   F  G+G 
Sbjct: 1539 EDTGITTVDSTTNS-NSTTNTKLISTIGA-------------STLTEDNIPTHFTPGKGA 1584

Query: 308  DFPSCEVLPGQS*NDEAVEVTISRKT 385
            +F + E  PG+  N  A+E TI   T
Sbjct: 1585 NFTATECTPGKGANSTAIECTIGAST 1610


>tr|Q6RKJ7|Q6RKJ7_BOTFU Polyketide synthase OS=Botryotinia fuckeliana
            GN=PKS3 PE=3 SV=1
          Length = 3941

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
 Frame = +2

Query: 56   WS*SLLAEERFHDEPSSKRLRMQLEDTNVTGEEPTRNSCASMS----------NNSLVQA 205
            WS S   ++ +H E   K +R+ LE  +VT      NS  S+           N ++V +
Sbjct: 2104 WSRSPPIDQPWHRELQEKGVRILLESVDVTDSTAVANSVQSLREQWPRIAGIVNGAMVIS 2163

Query: 206  ESSFHNHGFEAGQDAVK 256
            +S F +  FE+   AVK
Sbjct: 2164 DSMFFDMSFESFNRAVK 2180