NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915933
Clone id YMU001_000079_F08
Library
Length 427
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATGCAGGGGGAATTTACAAGTACAAAAATGTCACTGTGATCAGTAGCACTTGGAGCGAG
GCATTCAACATTATAATGAGGCATAGCTCTCTTTGCTGTGTGGGTTCAAACGGTCTCTGG
CAACCTCAACCGTGCATTGTTTGGGGATGGCTGGTGTGGATGTCACGTAGTAAAGGAAGG
CTGAACAAATTGGATTAGGTCTGTAGTGGATGGTGATTGGGAGTTTGAAAAAGGTTTGAA
AGGGGTAGTGAAGGCAATCTCCTAACAATTGATCCGATGAAGGGAGAATTTGGAGGCTTG
TCACTATCGGTTTGTAGGACTAACTACAAGCACTCACACTACATTTAAGGCTAAGAACTA
TCTGATCAATACATCAGGGAGCTTGTAGATTTTTGTCGAGGCCTTTGTGGTGAATAGCTA
GGGCTCT
■■Homology search results ■■ -
sp_hit_id Q9VQU9
Definition sp|Q9VQU9|BOWEL_DROME Protein bowel OS=Drosophila melanogaster
Align length 50
Score (bit) 32.7
E-value 0.61
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915933|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_F08.
         (427 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VQU9|BOWEL_DROME Protein bowel OS=Drosophila melanogaster G...    33   0.61 
sp|Q5NCP0|RNF43_MOUSE RING finger protein 43 OS=Mus musculus GN=...    30   3.1  
sp|Q8PZJ7|ACKA_METMA Acetate kinase OS=Methanosarcina mazei GN=a...    30   4.0  
sp|Q6NXD8|DEN5B_DANRE DENN domain-containing protein 5B OS=Danio...    30   4.1  
sp|Q5UPF3|YL081_MIMIV Putative ankyrin repeat protein L81 OS=Aca...    30   5.3  
sp|Q28Q14|RL27_JANSC 50S ribosomal protein L27 OS=Jannaschia sp....    30   5.3  
sp|P05769|POLG_MVEV5 Genome polyprotein OS=Murray valley encepha...    30   5.3  
sp|Q558U1|IFKA_DICDI Probable serine/threonine-protein kinase if...    29   8.8  
sp|P09644|TBA5_CHICK Tubulin alpha-5 chain OS=Gallus gallus PE=3...    29   9.1  

>sp|Q9VQU9|BOWEL_DROME Protein bowel OS=Drosophila melanogaster
           GN=bowl PE=1 SV=1
          Length = 744

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
 Frame = -3

Query: 323 LVLQTDSDKPPNSP----------FIGSIVRRLPSLPLSNL-FQTPNHHP 207
           ++ Q +S KPPN P          F+GSI  R   LP   L    P+HHP
Sbjct: 624 IITQPESGKPPNQPLHSPHEAMPSFLGSIPMRKRILPAPTLDLMDPHHHP 673


>sp|Q5NCP0|RNF43_MOUSE RING finger protein 43 OS=Mus musculus
           GN=Rnf43 PE=2 SV=1
          Length = 784

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
 Frame = -2

Query: 228 SNSQSPSTTDLIQFVQPSFTT*HPH--------QPSPNNARLRLPETV*THTAKRAMPHY 73
           S S  P+ + L+   + S T  HPH        +P P +    LP  +  HTA    PHY
Sbjct: 630 SPSPKPNPSGLLNLQKSSLTVRHPHRKRRGGPSEPLPTS----LPPDLTVHTACPVFPHY 685

Query: 72  NVECLAP 52
           +     P
Sbjct: 686 SPRLAYP 692


>sp|Q8PZJ7|ACKA_METMA Acetate kinase OS=Methanosarcina mazei GN=ackA
           PE=3 SV=2
          Length = 408

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 296 PPNSPFIGSIVRRLPSLPLSNLFQTPNHHPLQT*SNLFSLP 174
           PPN   I S    +P +P+  +F T  HH +   + +++LP
Sbjct: 125 PPNMMGISSCQEIMPGVPMVAVFDTAFHHTIPPYAYMYALP 165


>sp|Q6NXD8|DEN5B_DANRE DENN domain-containing protein 5B OS=Danio
           rerio GN=dennd5b PE=2 SV=2
          Length = 1311

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -1

Query: 244 PFQTFFKLPITIHYRPNPICSAFLYYVTSTPAIPKQCTVEVARDRLNPH 98
           P +  FK  +  HY  N  C+ F     +   +PK  +    RD L PH
Sbjct: 64  PLKRTFKSKVLAHYPENIECNPFDQDAVNMLCMPKGLSFRTQRDSLAPH 112


>sp|Q5UPF3|YL081_MIMIV Putative ankyrin repeat protein L81
           OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L81 PE=4
           SV=1
          Length = 277

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -1

Query: 307 IVTSLQILPSSDQLLGDCLHYPFQTFFKLPITIHYRPNPICSAFLYYVTSTPAIPKQCTV 128
           ++TS ++   S       L Y F  + K  +T   +   ICS   YY+T T +  K  T+
Sbjct: 19  LMTSRRLSRKSCLSDSSTLEYSFSLYNKYCVTKKLKIKTICSFIYYYLTITISTIKNSTM 78

Query: 127 EVARDRLN-PH--SKESYASL 74
                R N  H   K SYA++
Sbjct: 79  SAKHLRPNITHIPVKRSYANI 99


>sp|Q28Q14|RL27_JANSC 50S ribosomal protein L27 OS=Jannaschia sp.
           (strain CCS1) GN=rpmA PE=3 SV=1
          Length = 89

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 113 VSGNLNRALFGDGWCGCHVVKEG*TNWIRSVVDGDWEFEKGLKG 244
           ++GN+     G+ W     V EG  + I +V DG   F+KG KG
Sbjct: 32  IAGNIIARQRGNKWWPGEGVGEGKDHTIYAVADGHVSFKKGFKG 75


>sp|P05769|POLG_MVEV5 Genome polyprotein OS=Murray valley encephalitis
            virus (strain MVE-1-51) PE=1 SV=2
          Length = 3434

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +2

Query: 80   GIALFAVWVQTVSGNLNRA---LFGDGWCGCHVVKEG*TNWIRSVVDGDWEFEKGLKGVV 250
            GI     W++    N +     + G    G H V    + WI S ++G W+ E+ + G V
Sbjct: 954  GITSTRGWLKLREENTSECDSTIIGTAVKGNHAVHSDLSYWIESGLNGTWKLERAIFGEV 1013

Query: 251  KA 256
            K+
Sbjct: 1014 KS 1015


>sp|Q558U1|IFKA_DICDI Probable serine/threonine-protein kinase ifkA
            OS=Dictyostelium discoideum GN=ifkA PE=2 SV=1
          Length = 2258

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 22/77 (28%), Positives = 29/77 (37%)
 Frame = -3

Query: 317  LQTDSDKPPNSPFIGSIVRRLPSLPLSNLFQTPNHHPLQT*SNLFSLPLLRDIHTSHPQT 138
            LQT   KPP SP         P  PL  + Q+P   P Q     F+ P      T+ P  
Sbjct: 814  LQTSQQKPPLSP---------PQTPLKQIPQSPQSPPQQN----FNTPPTTTTTTTTPTA 860

Query: 137  MHG*GCQRPFEPTQQRE 87
                    P  P Q+++
Sbjct: 861  TPTTPTMTPLTPIQKQQ 877


>sp|P09644|TBA5_CHICK Tubulin alpha-5 chain OS=Gallus gallus PE=3
           SV=1
          Length = 448

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +1

Query: 322 NYKHSHYI*G*ELSDQY---IRELVDFCRGLCG 411
           NY   HY  G E+ DQ    IR+L D C GL G
Sbjct: 102 NYARGHYTIGKEIIDQVLDRIRKLADQCTGLQG 134
tr_hit_id B4L9X7
Definition tr|B4L9X7|B4L9X7_DROMO GI14159 OS=Drosophila mojavensis
Align length 42
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915933|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_F08.
         (427 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4L9X7|B4L9X7_DROMO GI14159 OS=Drosophila mojavensis GN=GI141...    34   4.1  
tr|Q5AQD8|Q5AQD8_EMENI Putative uncharacterized protein OS=Emeri...    34   4.2  
tr|P79045|P79045_EMENI DNA binding regulatory protein AmdX OS=Em...    34   4.2  
tr|B4I337|B4I337_DROSE GM18436 OS=Drosophila sechellia GN=GM1843...    33   7.0  
tr|B4Q9Q4|B4Q9Q4_DROSI GD23254 OS=Drosophila simulans GN=GD23254...    33   9.1  
tr|B3N378|B3N378_DROER GG24967 OS=Drosophila erecta GN=GG24967 P...    33   9.1  
tr|A4V047|A4V047_DROME Brother of odd with entrails limited, iso...    33   9.1  

>tr|B4L9X7|B4L9X7_DROMO GI14159 OS=Drosophila mojavensis GN=GI14159
           PE=4 SV=1
          Length = 1021

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/42 (47%), Positives = 23/42 (54%)
 Frame = -3

Query: 299 KPPNSPFIGSIVRRLPSLPLSNLFQTPNHHPLQT*SNLFSLP 174
           +PP SP+     R   SLPLSNL  TP   PL     LF+LP
Sbjct: 324 RPPLSPY-----RLRSSLPLSNLIDTPPSSPLTPVGVLFNLP 360


>tr|Q5AQD8|Q5AQD8_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN9492.2 PE=4 SV=1
          Length = 1150

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -2

Query: 273 INC*EIAFTTPFKPFSNSQSPSTTDLIQFVQPSFTT*HPHQPSPNNARLRLPETV*THTA 94
           I C ++   +   P S +Q PST D+ +F+    T  HPH P  +   L       T+  
Sbjct: 488 IQCRDLYSRSSSSPTSTNQLPSTADMQRFISAYITYFHPHLPFLHIPSLNFQAPEYTNNL 547

Query: 93  KRAMPHYNV 67
           +    H N+
Sbjct: 548 RTPSGHLNL 556


>tr|P79045|P79045_EMENI DNA binding regulatory protein AmdX
           OS=Emericella nidulans GN=amdX PE=4 SV=1
          Length = 1150

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -2

Query: 273 INC*EIAFTTPFKPFSNSQSPSTTDLIQFVQPSFTT*HPHQPSPNNARLRLPETV*THTA 94
           I C ++   +   P S +Q PST D+ +F+    T  HPH P  +   L       T+  
Sbjct: 487 IQCRDLYSRSSSSPTSTNQLPSTADMQRFISAYITYFHPHLPFLHIPSLNFQAPEYTNNL 546

Query: 93  KRAMPHYNV 67
           +    H N+
Sbjct: 547 RTPSGHLNL 555


>tr|B4I337|B4I337_DROSE GM18436 OS=Drosophila sechellia GN=GM18436
           PE=4 SV=1
          Length = 226

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
 Frame = -3

Query: 323 LVLQTDSDKPPNSP----------FIGSIVRRLPSLPLSNL-FQTPNHHP 207
           ++ Q +S KPPN P          F+GSI  R   LP  +L    P+HHP
Sbjct: 106 IITQPESGKPPNQPLHSPHEAMPSFLGSIPMRKRILPAPSLDLMDPHHHP 155


>tr|B4Q9Q4|B4Q9Q4_DROSI GD23254 OS=Drosophila simulans GN=GD23254
           PE=4 SV=1
          Length = 1439

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
 Frame = -3

Query: 323 LVLQTDSDKPPNSP----------FIGSIVRRLPSLPLSNL-FQTPNHHP 207
           ++ Q +S KPPN P          F+GSI  R   LP   L    P+HHP
Sbjct: 624 IITQPESGKPPNQPLHSPHEAMPSFLGSIPMRKRILPAPTLDLMDPHHHP 673


>tr|B3N378|B3N378_DROER GG24967 OS=Drosophila erecta GN=GG24967 PE=4
           SV=1
          Length = 744

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
 Frame = -3

Query: 323 LVLQTDSDKPPNSP----------FIGSIVRRLPSLPLSNL-FQTPNHHP 207
           ++ Q +S KPPN P          F+GSI  R   LP   L    P+HHP
Sbjct: 624 IITQPESGKPPNQPLHSPHEAMPSFLGSIPMRKRILPAPTLDLMDPHHHP 673


>tr|A4V047|A4V047_DROME Brother of odd with entrails limited,
           isoform B OS=Drosophila melanogaster GN=bowl PE=4 SV=1
          Length = 744

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
 Frame = -3

Query: 323 LVLQTDSDKPPNSP----------FIGSIVRRLPSLPLSNL-FQTPNHHP 207
           ++ Q +S KPPN P          F+GSI  R   LP   L    P+HHP
Sbjct: 624 IITQPESGKPPNQPLHSPHEAMPSFLGSIPMRKRILPAPTLDLMDPHHHP 673