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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915940
Clone id YMU001_000079_G05
Library
Length 434
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCCCTAGTGAAAGAGAATACTGTTTCTTGCTTTGTAAAAGATTGCTATCGGTAAAATGTA
TGAAATTGTGTGCATGATTCAGTCGAAGTGGCTAGCAACATGGATCTCTTTCGTGGTAGC
CATTAGTCACAATTAAGGATGCATTATTTACACAGAATTAAGGATTAGTCTGATTTGAGA
TCCATATGCCACTCCGCACGCCACCTCTCTGGCACCATGTGGATTCTGTTCACATTCCAT
CCTGAAGCATGGAGCTCAGATAAGAAGACAGGATAGTTGCTCTCCATCCAGACACAGCTG
CTATTCTCTGACTCATCGGCATCAAAACTTTGCAGAAGACTTGCAGCAACAAGCGCATGT
ACGTAAGATTTCAAATGATCCTCTCTTGTCGCATACCGATGTAAAATCACAAAAATTATT
CCTCTATGTGGGTA
■■Homology search results ■■ -
sp_hit_id Q91W34
Definition sp|Q91W34|CP058_MOUSE UPF0420 protein C16orf58 homolog OS=Mus musculus
Align length 98
Score (bit) 37.0
E-value 0.035
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915940|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_G05.
         (434 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91W34|CP058_MOUSE UPF0420 protein C16orf58 homolog OS=Mus mu...    37   0.035
sp|Q499P8|CP058_RAT UPF0420 protein C16orf58 homolog OS=Rattus n...    36   0.078
sp|Q6BT42|DSE1_DEBHA Protein DSE1 OS=Debaryomyces hansenii GN=DS...    34   0.30 
sp|P51688|SPHM_HUMAN N-sulphoglucosamine sulphohydrolase OS=Homo...    30   3.3  
sp|P53828|YN36_YEAST Putative uncharacterized protein YNL296W OS...    30   5.6  
sp|Q5R8F6|CP058_PONAB UPF0420 protein C16orf58 homolog OS=Pongo ...    30   5.6  
sp|Q96GQ5|CP058_HUMAN UPF0420 protein C16orf58 OS=Homo sapiens G...    30   5.6  
sp|Q9USZ4|RPA34_SCHPO DNA-directed RNA polymerase I subunit rpa3...    29   7.3  
sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae GN...    29   9.6  

>sp|Q91W34|CP058_MOUSE UPF0420 protein C16orf58 homolog OS=Mus
           musculus PE=2 SV=1
          Length = 466

 Score = 37.0 bits (84), Expect = 0.035
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
 Frame = -1

Query: 425 RGIIFVILHRYATREDHLKSYVHALVA-------------ASLLQSFDADESENSSCVWM 285
           R  + V L + A  E  L++  H L+              A L     AD  + S  +  
Sbjct: 360 RNQVQVALSQEAGPETVLRAATHGLILGALQEDGPLPGELAELRHQVQADPKKESWILVR 419

Query: 284 ESN------YPVFLSELHASGWNVNRIHMVPERWRAEW 189
           E++      +P FL  L A+GW   + H+  + WRA W
Sbjct: 420 ETHQVLDTLFPKFLKGLQAAGWKTEKHHLEVDEWRATW 457


>sp|Q499P8|CP058_RAT UPF0420 protein C16orf58 homolog OS=Rattus
           norvegicus PE=2 SV=1
          Length = 466

 Score = 35.8 bits (81), Expect = 0.078
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 287 MESNYPVFLSELHASGWNVNRIHMVPERWRAEW 189
           +++ +P FL  L A+GW   + H+  + WRA W
Sbjct: 425 LDTLFPKFLKGLQAAGWKTEKHHLEVDEWRATW 457


>sp|Q6BT42|DSE1_DEBHA Protein DSE1 OS=Debaryomyces hansenii GN=DSE1
           PE=3 SV=2
          Length = 657

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -1

Query: 386 REDHLKSYVHALVAASLLQSFDADESENSSCVWMESNYPVFLSELHASGWNVNRIHMVPE 207
           R++ +K Y   L   S + S D  +S NSS  W+  N+    +E+     ++NR+++   
Sbjct: 12  RQNAVKKYSPELSPVSSMSSLDLPKSNNSSSSWLLDNHNPKDTEILNKSCSLNRLNIKSN 71

Query: 206 RWR 198
            W+
Sbjct: 72  YWK 74


>sp|P51688|SPHM_HUMAN N-sulphoglucosamine sulphohydrolase OS=Homo
           sapiens GN=SGSH PE=1 SV=1
          Length = 502

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +2

Query: 188 ATPHATSLAPCGFCSHSILKHGAQIRRQDSCSPSRHSCYSLTHRHQNFAEDLQQQAH--- 358
           ATPH  +LA       S+L   A      SCSPSR S  +   +HQN    L Q  H   
Sbjct: 46  ATPHLDALA-----RRSLLFRNA-FTSVSSCSPSRASLLTGLPQHQNGMYGLHQDVHHFN 99

Query: 359 -VRKISNDPLL 388
              K+ + PLL
Sbjct: 100 SFDKVRSLPLL 110


>sp|P53828|YN36_YEAST Putative uncharacterized protein YNL296W
           OS=Saccharomyces cerevisiae GN=YNL296W PE=5 SV=1
          Length = 104

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 353 LVAASLLQSFDADESENSSCVWMESNYPVFLS 258
           +V   L  S D + +  SSC+ MESN PVF++
Sbjct: 72  MVEFLLFDSEDKERNSASSCLCMESNPPVFMA 103


>sp|Q5R8F6|CP058_PONAB UPF0420 protein C16orf58 homolog OS=Pongo
           abelii PE=2 SV=1
          Length = 468

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 275 YPVFLSELHASGWNVNRIHMVPERWRAEW 189
           +P FL  L  +GW   +  +  + WRA W
Sbjct: 431 FPKFLKGLQDAGWKTEKHQLEVDEWRATW 459


>sp|Q96GQ5|CP058_HUMAN UPF0420 protein C16orf58 OS=Homo sapiens
           GN=C16orf58 PE=1 SV=2
          Length = 468

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 275 YPVFLSELHASGWNVNRIHMVPERWRAEW 189
           +P FL  L  +GW   +  +  + WRA W
Sbjct: 431 FPKFLKGLQDAGWKTEKHQLEVDEWRATW 459


>sp|Q9USZ4|RPA34_SCHPO DNA-directed RNA polymerase I subunit rpa34
           OS=Schizosaccharomyces pombe GN=rpa34 PE=1 SV=1
          Length = 251

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 254 AQIRRQDSCSPSRHSCYSLTHRHQNFAEDLQQQAHVRKISNDPLLSHTDVKSQ 412
           + I  Q S      S  S  H   N  ED+ + A + K+   P+L+  D+K +
Sbjct: 20  SSIEDQHSSKEPEQSVESNNHGESNAQEDVAEIAGLEKVQGKPVLTTNDLKKE 72


>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae
           GN=MAM3 PE=1 SV=1
          Length = 706

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
 Frame = -1

Query: 416 IFVILHRYATRED-------HLKSYVHALVAASLLQSFDADESENSSCVWMESN 276
           +FV +H++  R+        H+ SY+H L  +S  +   AD+++ SS +   SN
Sbjct: 389 VFVDMHQHIMRQQPGPLSKRHITSYLHHLYTSSHKEHKAADQADESSPLLSPSN 442
tr_hit_id A9SCJ4
Definition tr|A9SCJ4|A9SCJ4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 81
Score (bit) 77.0
E-value 4.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915940|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_G05.
         (434 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SCJ4|A9SCJ4_PHYPA Predicted protein OS=Physcomitrella paten...    77   4e-13
tr|B8LKD3|B8LKD3_PICSI Putative uncharacterized protein OS=Picea...    62   1e-08
tr|Q9LMX1|Q9LMX1_ARATH F21F23.21 protein OS=Arabidopsis thaliana...    59   2e-07
tr|Q84JB8|Q84JB8_ARATH Putative uncharacterized protein At1g1377...    59   2e-07
tr|B3H4U4|B3H4U4_ARATH Uncharacterized protein At1g13770.2 OS=Ar...    59   2e-07
tr|B6TVK3|B6TVK3_MAIZE Putative uncharacterized protein OS=Zea m...    57   5e-07
tr|B4F9L0|B4F9L0_MAIZE Putative uncharacterized protein OS=Zea m...    57   5e-07
tr|A7P2F8|A7P2F8_VITVI Chromosome chr1 scaffold_5, whole genome ...    53   7e-06
tr|Q10Q12|Q10Q12_ORYSJ Expressed protein (Putative uncharacteriz...    52   1e-05
tr|B8AQS9|B8AQS9_ORYSI Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|B8FV09|B8FV09_DESHD Putative uncharacterized protein OS=Desul...    33   7.1  
tr|Q7XKW2|Q7XKW2_ORYSA OSJNBa0073E02.7 protein OS=Oryza sativa G...    33   7.1  
tr|Q0JBQ4|Q0JBQ4_ORYSJ Os04g0517300 protein OS=Oryza sativa subs...    33   7.1  
tr|Q01J52|Q01J52_ORYSA OSIGBa0145M07.5 protein OS=Oryza sativa G...    33   7.1  
tr|A6N1H9|A6N1H9_ORYSI Putative uncharacterized protein (Fragmen...    33   7.1  
tr|A3AVL0|A3AVL0_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|A2YNN9|A2YNN9_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|A2XVJ5|A2XVJ5_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|Q5X8R0|Q5X8R0_LEGPA Putative uncharacterized protein OS=Legio...    33   9.3  
tr|A9S9J8|A9S9J8_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.3  
tr|B7PZ23|B7PZ23_IXOSC Putative uncharacterized protein (Fragmen...    33   9.3  
tr|B2VR59|B2VR59_PYRTR Zinc finger protein 383 OS=Pyrenophora tr...    33   9.3  

>tr|A9SCJ4|A9SCJ4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_183447 PE=4 SV=1
          Length = 437

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 37/81 (45%), Positives = 47/81 (58%)
 Frame = -1

Query: 431 PHRGIIFVILHRYATREDHLKSYVHALVAASLLQSFDADESENSSCVWMESNYPVFLSEL 252
           P   I+ V+LH+ AT +D L  YVHAL  A L     AD+SE  +  WM++NY  FL  L
Sbjct: 350 PKGAIVHVVLHKLATPQDFLHGYVHALCLADLQLRSPADQSEELAISWMKNNYTAFLDSL 409

Query: 251 HASGWNVNRIHMVPERWRAEW 189
             SGW  +RI +    WRAEW
Sbjct: 410 GKSGWATDRILVETGEWRAEW 430


>tr|B8LKD3|B8LKD3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 446

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
 Frame = -1

Query: 422 GIIFVILHRYATREDHLKSYVHALVAASLLQSFDA--DESENSSCVWMESNYPVFLS-EL 252
           G I VIL++ +   D L+SY+H LV +  + S  +  D +   SC+WME  Y +F+S +L
Sbjct: 356 GTIEVILNKDSVSADILQSYIHGLVLSYHMGSSSSVNDANNADSCLWMEKYYSMFISKQL 415

Query: 251 HASGWNVNRIHMVPERWRAEW 189
            ASGWN  R+ +    WRA W
Sbjct: 416 QASGWNTGRLLVPSVDWRAHW 436


>tr|Q9LMX1|Q9LMX1_ARATH F21F23.21 protein OS=Arabidopsis thaliana
           GN=F21F23.21 PE=4 SV=1
          Length = 438

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 28/79 (35%), Positives = 45/79 (56%)
 Frame = -1

Query: 425 RGIIFVILHRYATREDHLKSYVHALVAASLLQSFDADESENSSCVWMESNYPVFLSELHA 246
           +G + VILH+ +   D LKSY+HA+V A+L++   +  SE  +  W++ +Y   L +L +
Sbjct: 352 KGNVSVILHKDSKPADVLKSYIHAIVLANLMEKSTSFYSEGEA--WIDKHYDELLHKLRS 409

Query: 245 SGWNVNRIHMVPERWRAEW 189
            GW   R+      WRA W
Sbjct: 410 GGWKTERLLSPSITWRANW 428


>tr|Q84JB8|Q84JB8_ARATH Putative uncharacterized protein At1g13770
           OS=Arabidopsis thaliana GN=At1g13770 PE=2 SV=1
          Length = 440

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 28/79 (35%), Positives = 45/79 (56%)
 Frame = -1

Query: 425 RGIIFVILHRYATREDHLKSYVHALVAASLLQSFDADESENSSCVWMESNYPVFLSELHA 246
           +G + VILH+ +   D LKSY+HA+V A+L++   +  SE  +  W++ +Y   L +L +
Sbjct: 354 KGNVSVILHKDSKPADVLKSYIHAIVLANLMEKSTSFYSEGEA--WIDKHYDELLHKLRS 411

Query: 245 SGWNVNRIHMVPERWRAEW 189
            GW   R+      WRA W
Sbjct: 412 GGWKTERLLSPSITWRANW 430


>tr|B3H4U4|B3H4U4_ARATH Uncharacterized protein At1g13770.2
           OS=Arabidopsis thaliana GN=At1g13770 PE=4 SV=1
          Length = 353

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 28/79 (35%), Positives = 45/79 (56%)
 Frame = -1

Query: 425 RGIIFVILHRYATREDHLKSYVHALVAASLLQSFDADESENSSCVWMESNYPVFLSELHA 246
           +G + VILH+ +   D LKSY+HA+V A+L++   +  SE  +  W++ +Y   L +L +
Sbjct: 267 KGNVSVILHKDSKPADVLKSYIHAIVLANLMEKSTSFYSEGEA--WIDKHYDELLHKLRS 324

Query: 245 SGWNVNRIHMVPERWRAEW 189
            GW   R+      WRA W
Sbjct: 325 GGWKTERLLSPSITWRANW 343


>tr|B6TVK3|B6TVK3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 442

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 29/79 (36%), Positives = 43/79 (54%)
 Frame = -1

Query: 425 RGIIFVILHRYATREDHLKSYVHALVAASLLQSFDADESENSSCVWMESNYPVFLSELHA 246
           +GI++V +H+ AT  D L+S+VH LV AS  Q+      E     WM+  Y  F+S+L  
Sbjct: 356 QGIVYVFIHKEATPADVLRSFVHGLVLASSTQNSKPQHLEARR--WMDEMYTSFISKLQT 413

Query: 245 SGWNVNRIHMVPERWRAEW 189
            G++  R+      WRA W
Sbjct: 414 EGYSTERLLSHSILWRAHW 432


>tr|B4F9L0|B4F9L0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 442

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 29/79 (36%), Positives = 43/79 (54%)
 Frame = -1

Query: 425 RGIIFVILHRYATREDHLKSYVHALVAASLLQSFDADESENSSCVWMESNYPVFLSELHA 246
           +GI++V +H+ AT  D L+S+VH LV AS  Q+      E     WM+  Y  F+S+L  
Sbjct: 356 QGIVYVFIHKEATPADVLRSFVHGLVLASSTQNSKPQHLEARR--WMDEMYTSFISKLQT 413

Query: 245 SGWNVNRIHMVPERWRAEW 189
            G++  R+      WRA W
Sbjct: 414 EGYSTERLLSHSILWRAHW 432


>tr|A7P2F8|A7P2F8_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030040001
           PE=4 SV=1
          Length = 80

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = -1

Query: 404 LHRYATREDHLKSYVHALVAASLLQSFDADESENSSCVWMESNYPVFLSELHASGWNVNR 225
           +H+ +T  D L+S++HALV A+L+        E+ S  WM+  Y  FL +L +SGW   R
Sbjct: 1   MHKDSTASDVLQSFIHALVMANLVDKSIYIHLESRS--WMDKQYENFLLKLQSSGWKTER 58

Query: 224 IHMVPERWRAEW 189
           +      WRA W
Sbjct: 59  LLSPSIIWRANW 70


>tr|Q10Q12|Q10Q12_ORYSJ Expressed protein (Putative uncharacterized
           protein) OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g11500 PE=4 SV=1
          Length = 497

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 24/78 (30%), Positives = 40/78 (51%)
 Frame = -1

Query: 422 GIIFVILHRYATREDHLKSYVHALVAASLLQSFDADESENSSCVWMESNYPVFLSELHAS 243
           G + + +H+ A   D L S++H LV A L+Q   +  +E     W++  Y  F+S+L   
Sbjct: 412 GSVHIFIHKQAAATDILMSFIHGLVLAHLMQKSKSGHAEARQ--WIDEKYNTFISKLQVE 469

Query: 242 GWNVNRIHMVPERWRAEW 189
           G++  R+      WRA W
Sbjct: 470 GYSTERLLSHSIVWRAHW 487


>tr|B8AQS9|B8AQS9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10514 PE=4 SV=1
          Length = 479

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 24/78 (30%), Positives = 40/78 (51%)
 Frame = -1

Query: 422 GIIFVILHRYATREDHLKSYVHALVAASLLQSFDADESENSSCVWMESNYPVFLSELHAS 243
           G + + +H+ A   D L S++H LV A L+Q   +  +E     W++  Y  F+S+L   
Sbjct: 394 GSVHIFIHKQAAATDILMSFIHGLVLAHLMQKSKSGHAEARQ--WIDEKYNTFISKLQVE 451

Query: 242 GWNVNRIHMVPERWRAEW 189
           G++  R+      WRA W
Sbjct: 452 GYSTERLLSHSIVWRAHW 469