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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915953
Clone id YMU001_000079_H11
Library
Length 379
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000079_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCCTCAAGTTGCCAAGTCGGTATCTAGGCTACGTTCAAATTGTGTAAGCGGGCGAACAG
CAGCTTCGATCGACCCATCAAGCGAGACGCGCACAAGCAAGGAAGAAACTTTCTTCGTCT
CCTGCAGAAGATCGGTCGCAGCTACAAGCTTTTTCCAGGAATTCTGCGTTTCACTGTGAT
CTTCCTCGTATTCTTTATTCTTGTTCTCCGTAGCGAGTTATGCACAGCAGCTCGGAGCGT
AGGGACTCTAATTACAGCCAGTATGGCGGATTCCCCGATCGTCCTCAGCATCCCGCTGGG
GCGCCCTCTTACTGGGCTCAACCATCGCAACCCTCATTCTCTTACCCTGCTGCCCCTCCC
CCAAACCCTTACTATTCTC
■■Homology search results ■■ -
sp_hit_id P76356
Definition sp|P76356|YOEA_ECOLI Putative uncharacterized protein yoeA OS=Escherichia coli (strain K12)
Align length 35
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915953|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_H11.
         (379 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P76356|YOEA_ECOLI Putative uncharacterized protein yoeA OS=Es...    31   1.7  
sp|P25260|T2E1_HERAU Type-2 restriction enzyme HgiEI OS=Herpetos...    30   2.8  
sp|P25259|T2C2_HERAU Type-2 restriction enzyme HgiCII OS=Herpeto...    30   3.7  
sp|Q5R809|TMED5_PONAB Transmembrane emp24 domain-containing prot...    30   4.8  
sp|Q9Y3A6|TMED5_HUMAN Transmembrane emp24 domain-containing prot...    30   4.8  
sp|Q2KJ84|TMED5_BOVIN Transmembrane emp24 domain-containing prot...    29   6.3  
sp|Q10033|YSI1_CAEEL Uncharacterized protein F15G9.1 OS=Caenorha...    29   8.2  
sp|Q6AXN3|TMED5_RAT Transmembrane emp24 domain-containing protei...    29   8.2  
sp|Q1IDS5|RAPA_PSEE4 RNA polymerase-associated protein rapA OS=P...    29   8.2  
sp|P70701|WN10A_MOUSE Protein Wnt-10a OS=Mus musculus GN=Wnt10a ...    29   8.3  
sp|Q9GZT5|WN10A_HUMAN Protein Wnt-10a OS=Homo sapiens GN=WNT10A ...    29   8.3  

>sp|P76356|YOEA_ECOLI Putative uncharacterized protein yoeA
           OS=Escherichia coli (strain K12) GN=yoeA PE=5 SV=3
          Length = 167

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 36  SNCVSGRTAASIDPSSETRTSKEETFFVSCRRSVA 140
           S C+SG  + +   SSET+ S EET  V+  RS +
Sbjct: 16  SLCISGIVSTATATSSETKISNEETLVVTTNRSAS 50


>sp|P25260|T2E1_HERAU Type-2 restriction enzyme HgiEI
           OS=Herpetosiphon aurantiacus GN=hgiEIR PE=4 SV=1
          Length = 274

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
 Frame = -1

Query: 211 TENKNKEYEEDHSETQNSWKKLVAATDLLQETKKVSSLLVRVSLDGSIE--------AAV 56
           T NK K+Y     + Q S    V     L+E + V S L  +S DG ++        A++
Sbjct: 7   TRNKIKDYLNSFIQQQLS----VYRERSLREFQDVDSYLPSLSKDGDLKPFHASLIPASI 62

Query: 55  RPLTQFERSLDTDLAT 8
             L +FERSL T L +
Sbjct: 63  MRLNRFERSLSTGLGS 78


>sp|P25259|T2C2_HERAU Type-2 restriction enzyme HgiCII
           OS=Herpetosiphon aurantiacus GN=hgiCIIR PE=4 SV=1
          Length = 273

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
 Frame = -1

Query: 211 TENKNKEYEEDHSETQNSWKKLVAATDLLQETKKVSSLLVRVSLDGSIE--------AAV 56
           T NK K+Y     + Q +    V +   L+E   V S L  +S DG ++        +A+
Sbjct: 7   TRNKIKDYLNGFIDQQLA----VYSQRNLREFHDVDSYLAAISSDGDLKPFHASIIPSAI 62

Query: 55  RPLTQFERSLDTDLAT 8
             L +FERSL T L +
Sbjct: 63  MRLNRFERSLSTGLGS 78


>sp|Q5R809|TMED5_PONAB Transmembrane emp24 domain-containing protein
           5 OS=Pongo abelii GN=TMED5 PE=2 SV=1
          Length = 229

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -1

Query: 181 DHSETQNSWKKLVAATDLLQE-----TKKVSSLLVRVSLDGSIEAAVRPLTQFERSL 26
           + ++ Q  WKK +  TD+L        + ++S+  R+S  G I+  +R     +R++
Sbjct: 131 EQAQEQEDWKKYITGTDMLDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNI 187


>sp|Q9Y3A6|TMED5_HUMAN Transmembrane emp24 domain-containing protein
           5 OS=Homo sapiens GN=TMED5 PE=1 SV=1
          Length = 229

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -1

Query: 181 DHSETQNSWKKLVAATDLLQE-----TKKVSSLLVRVSLDGSIEAAVRPLTQFERSL 26
           + ++ Q  WKK +  TD+L        + ++S+  R+S  G I+  +R     +R++
Sbjct: 131 EQAQEQEDWKKYITGTDILDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNI 187


>sp|Q2KJ84|TMED5_BOVIN Transmembrane emp24 domain-containing protein
           5 OS=Bos taurus GN=TMED5 PE=2 SV=1
          Length = 226

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -1

Query: 181 DHSETQNSWKKLVAATDLLQE-----TKKVSSLLVRVSLDGSIEAAVRPLTQFERSL 26
           +  + Q  WKK +  TD+L        + ++S+  R+S  G I+  +R     +R++
Sbjct: 128 EQEQEQEDWKKYITGTDMLDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNI 184


>sp|Q10033|YSI1_CAEEL Uncharacterized protein F15G9.1
           OS=Caenorhabditis elegans GN=F15G9.1 PE=2 SV=1
          Length = 279

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/52 (34%), Positives = 32/52 (61%)
 Frame = -1

Query: 217 LATENKNKEYEEDHSETQNSWKKLVAATDLLQETKKVSSLLVRVSLDGSIEA 62
           LA+E +  E EED  + + + ++L+AA+  ++E+  VSS +  VS   S+ A
Sbjct: 139 LASEPEESEEEEDDEDVRKA-QELLAASTQIRESSPVSSPVKEVSSAASLFA 189


>sp|Q6AXN3|TMED5_RAT Transmembrane emp24 domain-containing protein 5
           OS=Rattus norvegicus GN=Tmed5 PE=2 SV=1
          Length = 229

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -1

Query: 172 ETQNSWKKLVAATDLLQE-----TKKVSSLLVRVSLDGSIEAAVRPLTQFERSL 26
           E Q  WKK +  TD+L+       + ++S+  R+S  G I+  +R     +R++
Sbjct: 134 EGQEDWKKYITNTDVLEMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNI 187


>sp|Q1IDS5|RAPA_PSEE4 RNA polymerase-associated protein rapA
           OS=Pseudomonas entomophila (strain L48) GN=rapA PE=3
           SV=1
          Length = 948

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +1

Query: 49  AGEQQLRSTHQARRAQARKKLSSSPAEDRSQLQA 150
           AGE ++  TH+ R AQA+++L++   E+ ++L A
Sbjct: 872 AGEAKVLPTHEERVAQAQQRLAAEADEELARLTA 905


>sp|P70701|WN10A_MOUSE Protein Wnt-10a OS=Mus musculus GN=Wnt10a
           PE=2 SV=1
          Length = 417

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 152 KACSCDRSSAGDEESF 105
           KAC CD S  GDEE+F
Sbjct: 155 KACGCDASRRGDEEAF 170
tr_hit_id Q47B25
Definition tr|Q47B25|Q47B25_DECAR Putative uncharacterized protein OS=Dechloromonas aromatica (strain RCB)
Align length 68
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915953|Adiantum capillus-veneris mRNA, clone:
YMU001_000079_H11.
         (379 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q47B25|Q47B25_DECAR Putative uncharacterized protein OS=Dechl...    34   4.1  
tr|A2FA57|A2FA57_TRIVA Putative uncharacterized protein OS=Trich...    34   4.1  
tr|A3X2R9|A3X2R9_9BRAD Putative uncharacterized protein OS=Nitro...    33   5.3  
tr|A8FQE2|A8FQE2_SHESH Secretion protein HlyD family protein OS=...    33   7.0  

>tr|Q47B25|Q47B25_DECAR Putative uncharacterized protein
           OS=Dechloromonas aromatica (strain RCB) GN=Daro_3226
           PE=4 SV=1
          Length = 190

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
 Frame = +1

Query: 1   ILKLPSRYLGYVQIV*AGEQQLRSTHQA-RRAQARKKLSSSPAEDR--SQLQAFSRNSAF 171
           ++ LPSR      ++ AGEQQL+ T +A RRA+  ++L+ +  E    S L+ F   +  
Sbjct: 39  LILLPSRET----LIEAGEQQLQQTERASRRARIDRQLAQATPEQARLSLLERFPDEARL 94

Query: 172 HCDLPRIL 195
           H +L R+L
Sbjct: 95  HAELGRLL 102


>tr|A2FA57|A2FA57_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_263100 PE=4 SV=1
          Length = 569

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -1

Query: 211 TENKNKEYEEDHSETQNSWKKLVAATDLLQETKKVSSLLVRVSLDGSIEAAVRPLTQFER 32
           TE   K YEE        +KK+V   ++L+ETK+           G  E ++R L    +
Sbjct: 74  TEKTEKFYEEKMELYNEGFKKMVQEKEMLRETKEQKM--------GEYETSIRELENRNK 125

Query: 31  SLDTDL 14
            LDT++
Sbjct: 126 QLDTEI 131


>tr|A3X2R9|A3X2R9_9BRAD Putative uncharacterized protein
           OS=Nitrobacter sp. Nb-311A GN=NB311A_09821 PE=4 SV=1
          Length = 292

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
 Frame = -1

Query: 349 QGKRMRVAMVEP-------------SKRAPQRDAEDDRGIRHTGCN*SPYAPSCCA*LAT 209
           QGKR   A VE              S     +DA+    +   G     Y  +  A   T
Sbjct: 25  QGKRSMDAWVENTILEQLFLGLHHLSALEKMKDAKTSADVARVGILAWYYGVANAASAMT 84

Query: 208 ENKNKEYEEDHSETQNSWKKLVAATDLLQE--TKKVSSLL 95
             +N  ++EDH+ T N W + +AA  L  E  + +VSSL+
Sbjct: 85  AAQNGSFQEDHAGTANMWDREIAARGLAMEPFSWRVSSLV 124


>tr|A8FQE2|A8FQE2_SHESH Secretion protein HlyD family protein
           OS=Shewanella sediminis (strain HAW-EB3) GN=Ssed_0452
           PE=3 SV=1
          Length = 352

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 49  AGEQQLRSTHQARRAQARKKLSSSPAEDRSQLQAFSRNSAFHCD 180
           AG  +LRS  Q RR++  K+ + S  +D  Q+QA   +S  H D
Sbjct: 121 AGSDRLRSEQQLRRSKKLKEKNYSSQDDVDQMQASFESSVAHLD 164