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NBDC - LSDB Archive
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BP915954
Clone id YMU001_000081_A01
Library
Length 337
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGGGGAGTGCGTATTGATGTATGCTTTATGTGGTTCAAAGACTGATTCACTTTGATTGT
CAGCATAGTCGTGTCGGCTTATCGGTACAAGTGAAGTTATATTTTGCCTTCGCAAAAAAT
TTCGTGCGTTCATAGATTCCTCAAGCTCCCCATTCATTTTTGTGAAAAGATGTGCATTGC
TATATGCGTATCGGCTGTGATGTATGATATCTGTGGTTTGACCTGCTCTAGCCTGGCTAT
CACAGGTCTTTGACAGTTTACAGGTTTGTAGATGACAGGCATTTGGCAAATTATGGTTTT
GCAGCAGTTCACAAATGTGGAAAGTTTATACATATAG
■■Homology search results ■■ -
sp_hit_id A0ZZ25
Definition sp|A0ZZ25|RPOC2_GOSBA DNA-directed RNA polymerase subunit beta'' OS=Gossypium barbadense
Align length 79
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915954|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_A01.
         (337 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A0ZZ25|RPOC2_GOSBA DNA-directed RNA polymerase subunit beta''...    34   0.26 
sp|Q2L8Z5|RPOC2_GOSHI DNA-directed RNA polymerase subunit beta''...    33   0.34 
sp|Q0ZJ30|RPOC2_VITVI DNA-directed RNA polymerase subunit beta''...    32   0.99 
sp|A4GYP8|RPOC2_POPTR DNA-directed RNA polymerase subunit beta''...    32   0.99 
sp|Q14FG7|RPOC2_POPAL DNA-directed RNA polymerase subunit beta''...    32   0.99 
sp|B1NWE0|RPOC2_MANES DNA-directed RNA polymerase subunit beta''...    31   1.7  
sp|Q06H07|RPOC2_DRIGR DNA-directed RNA polymerase subunit beta''...    31   2.2  
sp|Q87DY3|ISPF_XYLFT 2-C-methyl-D-erythritol 2,4-cyclodiphosphat...    31   2.2  
sp|Q9PDT5|ISPF_XYLFA 2-C-methyl-D-erythritol 2,4-cyclodiphosphat...    31   2.2  
sp|A6MMB2|RPOC2_CHLSC DNA-directed RNA polymerase subunit beta''...    30   2.9  
sp|Q09G56|RPOC2_PLAOC DNA-directed RNA polymerase subunit beta''...    30   3.8  
sp|Q7YJY0|RPOC2_CALFG DNA-directed RNA polymerase subunit beta''...    30   3.8  
sp|P36062|AVT3_YEAST Vacuolar amino acid transporter 3 OS=Saccha...    30   3.8  
sp|A8SE78|RPOC2_CERDE DNA-directed RNA polymerase subunit beta''...    30   4.9  
sp|Q926Q4|RNPA_LISIN Ribonuclease P protein component OS=Listeri...    30   4.9  
sp|Q01901|POLG_PRSVH Genome polyprotein OS=Papaya ringspot virus...    30   4.9  
sp|Q8WTR7|ZN473_HUMAN Zinc finger protein 473 OS=Homo sapiens GN...    29   6.4  
sp|Q9C0D7|ZC12C_HUMAN Zinc finger CCCH domain-containing protein...    29   6.4  
sp|P12227|RPOC2_PEA DNA-directed RNA polymerase subunit beta'' (...    29   6.4  
sp|Q9BBS7|RPOC2_LOTJA DNA-directed RNA polymerase subunit beta''...    29   6.4  
sp|Q9P6U7|PSB2_NEUCR Probable proteasome subunit beta type-2 OS=...    29   6.4  
sp|Q4I8E9|PNS1_GIBZE Protein PNS1 OS=Gibberella zeae GN=PNS1 PE=...    29   6.4  
sp|Q0G9M9|RPOC2_LIRTU DNA-directed RNA polymerase subunit beta''...    29   8.4  

>sp|A0ZZ25|RPOC2_GOSBA DNA-directed RNA polymerase subunit beta''
           OS=Gossypium barbadense GN=rpoC2 PE=3 SV=1
          Length = 1391

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 23/79 (29%), Positives = 32/79 (40%)
 Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
           DS+     +TD+ H   Y YSN HL  K +     S  +  F       S+VP S H   
Sbjct: 443 DSEGEMHWSTDVYHSPEYTYSNVHLLPKTSHLWILSGGSYKF-------SVVPFSLHKDQ 495

Query: 61  DNQSESVFEPHKAYINTHS 5
           D  +       + YI+  S
Sbjct: 496 DQINIHYLSAERRYISRFS 514


>sp|Q2L8Z5|RPOC2_GOSHI DNA-directed RNA polymerase subunit beta''
           OS=Gossypium hirsutum GN=rpoC2 PE=3 SV=1
          Length = 1393

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 23/79 (29%), Positives = 32/79 (40%)
 Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
           DS+     +TD+ H   + YSN HL  K +     S  +  F       S+VP S H   
Sbjct: 443 DSEGEMHWSTDVYHSPEFTYSNVHLLPKTSHLWILSGGSYKF-------SVVPFSLHKDQ 495

Query: 61  DNQSESVFEPHKAYINTHS 5
           D  S       + YI+  S
Sbjct: 496 DQISIHYLSAERRYISRFS 514


>sp|Q0ZJ30|RPOC2_VITVI DNA-directed RNA polymerase subunit beta''
           OS=Vitis vinifera GN=rpoC2 PE=3 SV=1
          Length = 1394

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 22/79 (27%), Positives = 31/79 (39%)
 Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
           DS+     +TD+ H   + Y N HL  K +     S  +  F       S+VP S H   
Sbjct: 447 DSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILSGGSCRF-------SIVPFSIHKDQ 499

Query: 61  DNQSESVFEPHKAYINTHS 5
           D  S       + YI+  S
Sbjct: 500 DQMSVRSLSVERRYISNPS 518


>sp|A4GYP8|RPOC2_POPTR DNA-directed RNA polymerase subunit beta''
           OS=Populus trichocarpa GN=rpoC2 PE=3 SV=1
          Length = 1390

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
           DS+     +TD+ H S + YSN HL  K +     S  +         +S+VP S H   
Sbjct: 443 DSEGEMHWSTDVYHASEFTYSNVHLLPKTSHLWILSGGSCR-------SSIVPFSLHKDQ 495

Query: 61  DNQSESVFEPHKAYINTHS 5
           D  +       + YI+  S
Sbjct: 496 DQINVHSLSVERGYISNPS 514


>sp|Q14FG7|RPOC2_POPAL DNA-directed RNA polymerase subunit beta''
           OS=Populus alba GN=rpoC2 PE=3 SV=1
          Length = 1390

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
           DS+     +TD+ H S + YSN HL  K +     S  +         +S+VP S H   
Sbjct: 443 DSEGEMHWSTDVYHASEFTYSNVHLLPKTSHLWILSGGSCR-------SSIVPFSLHKDQ 495

Query: 61  DNQSESVFEPHKAYINTHS 5
           D  +       + YI+  S
Sbjct: 496 DQINVHSLSVERGYISNPS 514


>sp|B1NWE0|RPOC2_MANES DNA-directed RNA polymerase subunit beta''
           OS=Manihot esculenta GN=rpoC2 PE=3 SV=1
          Length = 1393

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
           DS+     +TD+ H   + YSN HL  K +     S ++         +S+VP S H   
Sbjct: 447 DSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGSSCR-------SSIVPFSLHKDQ 499

Query: 61  DNQSESVFEPHKAYINTHS 5
           D  +       + YI++ S
Sbjct: 500 DQMNVHSLSVKRRYISSPS 518


>sp|Q06H07|RPOC2_DRIGR DNA-directed RNA polymerase subunit beta''
           OS=Drimys granadensis GN=rpoC2 PE=3 SV=1
          Length = 1381

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
           DS+     +TD+ H   Y Y N HL  K +     S   R        +SLVP S H   
Sbjct: 448 DSEGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGGPRR-------SSLVPFSLHKDQ 500

Query: 61  DNQS 50
           D  +
Sbjct: 501 DQMN 504


>sp|Q87DY3|ISPF_XYLFT 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
           synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC
           700964) GN=ispF PE=3 SV=1
          Length = 176

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 309 NCCKTIICQMPVIYKPVNCQRPVIARLEQVKPQISYITADT 187
           N   T IC+ P I   VN  R  IARL +V+P+   + A T
Sbjct: 107 NVDATAICESPKIAPYVNAMREGIARLLEVQPECVSVKATT 147


>sp|Q9PDT5|ISPF_XYLFA 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
           synthase OS=Xylella fastidiosa GN=ispF PE=3 SV=1
          Length = 176

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 309 NCCKTIICQMPVIYKPVNCQRPVIARLEQVKPQISYITADT 187
           N   T IC+ P I   VN  R  IARL +V+P+   + A T
Sbjct: 107 NVDATAICESPKIAPYVNAMREGIARLLEVQPECVSVKATT 147


>sp|A6MMB2|RPOC2_CHLSC DNA-directed RNA polymerase subunit beta''
           OS=Chloranthus spicatus GN=rpoC2 PE=3 SV=1
          Length = 1389

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTK 158
           DS+     +TD+ H S Y Y N HL  K
Sbjct: 442 DSEGEMHWSTDVYHASEYTYGNVHLLPK 469
tr_hit_id A6L9K3
Definition tr|A6L9K3|A6L9K3_PARD8 Anthranilate synthase component I OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
Align length 39
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915954|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_A01.
         (337 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6L9K3|A6L9K3_PARD8 Anthranilate synthase component I OS=Para...    35   1.9  
tr|B4PUD6|B4PUD6_DROYA GE10741 OS=Drosophila yakuba GN=GE10741 P...    34   3.2  
tr|O82318|O82318_ARATH Putative receptor-like protein kinase OS=...    33   5.5  
tr|Q117R0|Q117R0_TRIEI TPR repeat OS=Trichodesmium erythraeum (s...    33   7.2  
tr|A9XW92|A9XW92_9ROSI DNA-directed RNA polymerase (Fragment) OS...    33   7.2  
tr|A9XW99|A9XW99_9ROSI DNA-directed RNA polymerase (Fragment) OS...    33   9.3  
tr|A9XW46|A9XW46_9ROSI DNA-directed RNA polymerase (Fragment) OS...    33   9.3  
tr|A1XK18|A1XK18_9MAGN RNA polymerase beta chain (Fragment) OS=S...    33   9.3  

>tr|A6L9K3|A6L9K3_PARD8 Anthranilate synthase component I
           OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
           20701 / NCTC 11152) GN=BDI_0591 PE=4 SV=1
          Length = 467

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 214 TDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNI 98
           TDI HH+R AY     F  ++G+L +++  R F+ R N+
Sbjct: 388 TDIEHHNRGAYGGCIGFIGLDGDLNQAITIRTFVSRGNV 426


>tr|B4PUD6|B4PUD6_DROYA GE10741 OS=Drosophila yakuba GN=GE10741 PE=4
           SV=1
          Length = 1524

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -1

Query: 178 NAHLFTKM--NGELEESMNARNFLRRQNITSLVPISRHDYADNQSESVFEPHKAYINTHS 5
           N H+  K+  N E+  S+NA+N L   N+    P+S   Y D  S+    P+  Y NT+S
Sbjct: 570 NRHMKQKLPDNFEIRNSLNAQNDL---NLDYFKPVSSQKYLDFGSKQKINPYLTYPNTNS 626


>tr|O82318|O82318_ARATH Putative receptor-like protein kinase
            OS=Arabidopsis thaliana GN=At2g25790 PE=2 SV=1
          Length = 960

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -1

Query: 274  HLQTCKLSKTCDSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNI 98
            HL T K S + +    +G    ++  +RY+YSN H+ T ++  ++ S++ R  +   N+
Sbjct: 860  HLLTGKCSSS-NEDIESGVNGSLVKWARYSYSNCHIDTWIDSSIDTSVHQREIVHVMNL 917


>tr|Q117R0|Q117R0_TRIEI TPR repeat OS=Trichodesmium erythraeum
           (strain IMS101) GN=Tery_0856 PE=4 SV=1
          Length = 213

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 259 KLSKTCDSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARN 119
           K  K C+   R G   DI H    AY  A  + K    L++S+N+ N
Sbjct: 117 KAVKACERSLRKGDDPDIFHPIHEAYFGAKKYNKAINSLKQSLNSDN 163


>tr|A9XW92|A9XW92_9ROSI DNA-directed RNA polymerase (Fragment)
           OS=Leonia glycycarpa GN=rpoC2 PE=3 SV=1
          Length = 1274

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
           DS+     +TD+ H   + YSN HL  K +     S  +         +S++P+S H   
Sbjct: 414 DSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCR-------SSIIPLSLHKDQ 466

Query: 61  DNQSESVFEPHKAYINTHS 5
           D  +       K+YI++ S
Sbjct: 467 DQMNIHSLSVEKSYISSPS 485


>tr|A9XW99|A9XW99_9ROSI DNA-directed RNA polymerase (Fragment)
           OS=Neurada procumbens GN=rpoC2 PE=3 SV=1
          Length = 1265

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
           DS+     +TD+ H   + YSN HL  K +     S  +  F       S+VP S H   
Sbjct: 413 DSEGEMHWSTDVYHSPEFTYSNVHLLPKTSHLWILSGGSCKF-------SIVPFSLHKDQ 465

Query: 61  DNQSESVFEPHKAYINTHS 5
           D  + +     + YI++ S
Sbjct: 466 DQLNINSLSVERRYISSLS 484


>tr|A9XW46|A9XW46_9ROSI DNA-directed RNA polymerase (Fragment)
           OS=Aphloia theiformis GN=rpoC2 PE=3 SV=1
          Length = 1273

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -1

Query: 241 DSQARAGQTTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYA 62
           DS+     +TD+ H  ++AYSN HL  K +     S  +         +S VP S H   
Sbjct: 412 DSEGEMHWSTDVYHAPKFAYSNVHLLPKTSHLWILSGGSCR-------SSAVPFSPHKDQ 464

Query: 61  DNQSESVFEPHKAYINTHS 5
           D  S       + YI++ S
Sbjct: 465 DQMSIHSISVERRYISSLS 483


>tr|A1XK18|A1XK18_9MAGN RNA polymerase beta chain (Fragment)
           OS=Sargentodoxa cuneata GN=rpoC2 PE=4 SV=1
          Length = 861

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -1

Query: 217 TTDIIHHSRYAYSNAHLFTKMNGELEESMNARNFLRRQNITSLVPISRHDYADNQSESVF 38
           +TD+ H + Y Y N HL  K +     S N          +S+VP   H   D  + +  
Sbjct: 6   STDVYHATEYTYGNVHLLPKTSHLWILSGNPYR-------SSIVPFLLHKDQDQMNVNSL 58

Query: 37  EPHKAYINTHS 5
            P + YI+  S
Sbjct: 59  SPERRYISNPS 69