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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915955
Clone id YMU001_000081_A03
Library
Length 368
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGGCGTAGCTCTCCTTCCTATGCATATGGCATGATCGAAGCTGTCCATCAGCCGCTATGG
GAAGGTAAGCTGTATAAGTTAGAAAGAGATGGTCACGCCCTTCTGATTGTCTCCTTCTCG
TCGTGAATTGTCGAAGAACATACGAGCGTACATGGCGAAGTTGGATTCTGCACAGAGAGA
AATTAGGCAGTTTGGTTTGCTTTAATCTGATCATACATGCAATCACGGCCAGTAGGCCTT
CAATCCTCCGGCCTCCTTTGCAAGGCATGTTGGCGTAAGCTGTATTGCCTTGGTTTTGTT
TGGTACAAGTGCCTGAGTTTGCAGGAATCAAACCTTCTTTTCTTTAGTATGCACAGATCA
TGCATAGT
■■Homology search results ■■ -
sp_hit_id P44446
Definition sp|P44446|LCFH_HAEIN Putative long-chain-fatty-acid--CoA ligase OS=Haemophilus influenzae
Align length 40
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915955|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_A03.
         (368 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P44446|LCFH_HAEIN Putative long-chain-fatty-acid--CoA ligase ...    31   2.2  
sp|Q9H0H3|ENC2_HUMAN Ectoderm-neural cortex protein 2 OS=Homo sa...    30   3.7  
sp|Q9ZCY2|MRAW_RICPR S-adenosyl-L-methionine-dependent methyltra...    30   4.9  
sp|Q8K023|AKC1H_MOUSE Aldo-keto reductase family 1 member C18 OS...    28   5.7  
sp|Q1RK25|EX7L_RICBR Exodeoxyribonuclease 7 large subunit OS=Ric...    29   8.3  
sp|A8GXS3|EX7L_RICB8 Exodeoxyribonuclease 7 large subunit OS=Ric...    29   8.3  
sp|Q9I5Q2|DNAE2_PSEAE Error-prone DNA polymerase OS=Pseudomonas ...    29   8.3  

>sp|P44446|LCFH_HAEIN Putative long-chain-fatty-acid--CoA ligase
           OS=Haemophilus influenzae GN=HI0002 PE=3 SV=1
          Length = 607

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
 Frame = +3

Query: 141 YERTWRSWILHREKLGSLVCF----NLIIHAITASRPSIL 248
           +ER W ++ILHR   G+++C+    N +  A+T  RP+++
Sbjct: 239 FERAWAAYILHR---GAILCYLEDTNQVRSALTEIRPTLM 275


>sp|Q9H0H3|ENC2_HUMAN Ectoderm-neural cortex protein 2 OS=Homo
           sapiens GN=KLHL25 PE=2 SV=1
          Length = 589

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 99  PSDCLLLVV-----NCRRTYERTWRSWILHREKLGSLVCFN 206
           PS+CL +++      CRR YE +WR  ++H E +     FN
Sbjct: 146 PSNCLGMMLLSDAHQCRRLYEFSWRMCLVHFETVRQSEDFN 186


>sp|Q9ZCY2|MRAW_RICPR S-adenosyl-L-methionine-dependent
           methyltransferase mraW OS=Rickettsia prowazekii GN=mraW
           PE=3 SV=1
          Length = 306

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +2

Query: 86  EMVTPF*LSPSRRELSKNIRAYMAKLDSAQREI 184
           +++TP  L+PS +E+  N+RA  AKL +A++ I
Sbjct: 274 KIITPKVLTPSSQEIRLNVRARSAKLRAAKKII 306


>sp|Q8K023|AKC1H_MOUSE Aldo-keto reductase family 1 member C18
           OS=Mus musculus GN=Akr1c18 PE=2 SV=2
          Length = 323

 Score = 27.7 bits (60), Expect(2) = 5.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
 Frame = +1

Query: 67  KLYKLE-RDGHALLIVSFSS*IVEEH--------TSVHGEVGFC 171
           K+ K+E  DGH++ ++ F +   EEH        T +  +VGFC
Sbjct: 4   KIQKIELNDGHSIPVLGFGTYATEEHLKKKSMESTKIAIDVGFC 47



 Score = 20.4 bits (41), Expect(2) = 5.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 225 TASRPSILRPPLQGMLA*AVLPWFCLVQVPEFAGIKP 335
           T+ RP ++RP L+  L    L +  L  +     +KP
Sbjct: 88  TSHRPELVRPSLENSLRKLNLDYVDLYLIHFPVSLKP 124


>sp|Q1RK25|EX7L_RICBR Exodeoxyribonuclease 7 large subunit
           OS=Rickettsia bellii (strain RML369-C) GN=xseA PE=3 SV=1
          Length = 442

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 235 LLAVIACMIRLKQTKLPNFSLCRIQLRHVRSYVLRQFT 122
           LL  + C+I LK+TKL +FS  RI    + +Y   + T
Sbjct: 329 LLDSLPCLISLKETKLKSFSKERIHPHKIITYKTLELT 366


>sp|A8GXS3|EX7L_RICB8 Exodeoxyribonuclease 7 large subunit
           OS=Rickettsia bellii (strain OSU 85-389) GN=xseA PE=3
           SV=1
          Length = 442

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 235 LLAVIACMIRLKQTKLPNFSLCRIQLRHVRSYVLRQFT 122
           LL  + C+I LK+TKL +FS  RI    + +Y   + T
Sbjct: 329 LLDSLPCLISLKETKLKSFSKERIHPHKIITYKTLELT 366


>sp|Q9I5Q2|DNAE2_PSEAE Error-prone DNA polymerase OS=Pseudomonas
           aeruginosa GN=dnaE2 PE=3 SV=1
          Length = 1031

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 275 RQHALQRRPED*RPTGRDCMYDQIKANQTA 186
           R+HALQ RP D R +G DC  +     Q A
Sbjct: 769 RRHALQTRPVDVRHSGWDCSLESFGQAQPA 798
tr_hit_id Q63LV1
Definition tr|Q63LV1|Q63LV1_BURPS Putative amidase OS=Burkholderia pseudomallei
Align length 37
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915955|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_A03.
         (368 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q63LV1|Q63LV1_BURPS Putative amidase OS=Burkholderia pseudoma...    34   4.2  
tr|Q62BJ2|Q62BJ2_BURMA Amidase family protein OS=Burkholderia ma...    34   4.2  
tr|Q3JFJ4|Q3JFJ4_BURP1 Amidase family protein OS=Burkholderia ps...    34   4.2  
tr|A3P4M7|A3P4M7_BURP0 Amidase family protein OS=Burkholderia ps...    34   4.2  
tr|A3NJ00|A3NJ00_BURP6 Amidase family protein OS=Burkholderia ps...    34   4.2  
tr|A3MD45|A3MD45_BURM7 Amidase family protein OS=Burkholderia ma...    34   4.2  
tr|A2RXH5|A2RXH5_BURM9 Amidase family protein OS=Burkholderia ma...    34   4.2  
tr|A1UVB0|A1UVB0_BURMS Amidase family protein OS=Burkholderia ma...    34   4.2  
tr|B7CFF2|B7CFF2_BURPS Amidase family protein OS=Burkholderia ps...    34   4.2  
tr|B2H7B0|B2H7B0_BURPS Amidase family protein OS=Burkholderia ps...    34   4.2  
tr|B1H5U4|B1H5U4_BURPS Amidase family protein OS=Burkholderia ps...    34   4.2  
tr|A9JY53|A9JY53_BURMA Amidase family protein OS=Burkholderia ma...    34   4.2  
tr|A8KRQ0|A8KRQ0_BURPS Amidase family protein OS=Burkholderia ps...    34   4.2  
tr|A8EL71|A8EL71_BURPS Amidase family protein OS=Burkholderia ps...    34   4.2  
tr|A5XKL2|A5XKL2_BURMA Amidase family protein OS=Burkholderia ma...    34   4.2  
tr|A5TGX9|A5TGX9_BURMA Amidase family protein OS=Burkholderia ma...    34   4.2  
tr|A5J3I8|A5J3I8_BURMA Amidase family protein OS=Burkholderia ma...    34   4.2  
tr|A4LH27|A4LH27_BURPS Amidase family protein OS=Burkholderia ps...    34   4.2  
tr|Q6K9B1|Q6K9B1_ORYSJ cDNA, clone: J065212B02, full insert sequ...    33   9.3  
tr|A3ACH7|A3ACH7_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.3  
tr|A8XZP3|A8XZP3_CAEBR CBR-GRO-1 protein OS=Caenorhabditis brigg...    33   9.3  

>tr|Q63LV1|Q63LV1_BURPS Putative amidase OS=Burkholderia
           pseudomallei GN=BPSS0911 PE=4 SV=1
          Length = 497

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 ERTWRSWILHREKLGSLVCFNLIIHAITASRPSILRP 254
           ER WRSW+ HR  L      NL++H    SR ++L+P
Sbjct: 323 ERIWRSWLAHRHLLSG---GNLLMHYREPSRRALLKP 356


>tr|Q62BJ2|Q62BJ2_BURMA Amidase family protein OS=Burkholderia
           mallei GN=BMAA1320 PE=4 SV=1
          Length = 497

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 ERTWRSWILHREKLGSLVCFNLIIHAITASRPSILRP 254
           ER WRSW+ HR  L      NL++H    SR ++L+P
Sbjct: 323 ERIWRSWLAHRHLLSG---GNLLMHYREPSRRALLKP 356


>tr|Q3JFJ4|Q3JFJ4_BURP1 Amidase family protein OS=Burkholderia
           pseudomallei (strain 1710b) GN=BURPS1710b_A2509 PE=4
           SV=1
          Length = 546

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 ERTWRSWILHREKLGSLVCFNLIIHAITASRPSILRP 254
           ER WRSW+ HR  L      NL++H    SR ++L+P
Sbjct: 372 ERIWRSWLAHRHLLSG---GNLLMHYREPSRRALLKP 405


>tr|A3P4M7|A3P4M7_BURP0 Amidase family protein OS=Burkholderia
           pseudomallei (strain 1106a) GN=BURPS1106A_A1252 PE=4
           SV=1
          Length = 484

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 ERTWRSWILHREKLGSLVCFNLIIHAITASRPSILRP 254
           ER WRSW+ HR  L      NL++H    SR ++L+P
Sbjct: 310 ERIWRSWLAHRHLLSG---GNLLMHYREPSRRALLKP 343


>tr|A3NJ00|A3NJ00_BURP6 Amidase family protein OS=Burkholderia
           pseudomallei (strain 668) GN=BURPS668_A1324 PE=4 SV=1
          Length = 484

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 ERTWRSWILHREKLGSLVCFNLIIHAITASRPSILRP 254
           ER WRSW+ HR  L      NL++H    SR ++L+P
Sbjct: 310 ERIWRSWLAHRHLLSG---GNLLMHYREPSRRALLKP 343


>tr|A3MD45|A3MD45_BURM7 Amidase family protein OS=Burkholderia
           mallei (strain NCTC 10247) GN=BMA10247_A0990 PE=4 SV=1
          Length = 484

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 ERTWRSWILHREKLGSLVCFNLIIHAITASRPSILRP 254
           ER WRSW+ HR  L      NL++H    SR ++L+P
Sbjct: 310 ERIWRSWLAHRHLLSG---GNLLMHYREPSRRALLKP 343


>tr|A2RXH5|A2RXH5_BURM9 Amidase family protein OS=Burkholderia
           mallei (strain NCTC 10229) GN=BMA10229_0577 PE=4 SV=1
          Length = 484

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 ERTWRSWILHREKLGSLVCFNLIIHAITASRPSILRP 254
           ER WRSW+ HR  L      NL++H    SR ++L+P
Sbjct: 310 ERIWRSWLAHRHLLSG---GNLLMHYREPSRRALLKP 343


>tr|A1UVB0|A1UVB0_BURMS Amidase family protein OS=Burkholderia
           mallei (strain SAVP1) GN=BMASAVP1_0302 PE=4 SV=1
          Length = 484

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 ERTWRSWILHREKLGSLVCFNLIIHAITASRPSILRP 254
           ER WRSW+ HR  L      NL++H    SR ++L+P
Sbjct: 310 ERIWRSWLAHRHLLSG---GNLLMHYREPSRRALLKP 343


>tr|B7CFF2|B7CFF2_BURPS Amidase family protein OS=Burkholderia
           pseudomallei 576 GN=BUC_5481 PE=4 SV=1
          Length = 484

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 ERTWRSWILHREKLGSLVCFNLIIHAITASRPSILRP 254
           ER WRSW+ HR  L      NL++H    SR ++L+P
Sbjct: 310 ERIWRSWLAHRHLLSG---GNLLMHYREPSRRALLKP 343


>tr|B2H7B0|B2H7B0_BURPS Amidase family protein OS=Burkholderia
           pseudomallei 1655 GN=BURPS1655_I0544 PE=4 SV=1
          Length = 484

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 144 ERTWRSWILHREKLGSLVCFNLIIHAITASRPSILRP 254
           ER WRSW+ HR  L      NL++H    SR ++L+P
Sbjct: 310 ERIWRSWLAHRHLLSG---GNLLMHYREPSRRALLKP 343