BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915961|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_A12.
         (440 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q39FE7|TIG_BURS3 Trigger factor OS=Burkholderia sp. (strain 3...    29   7.5  

>sp|Q39FE7|TIG_BURS3 Trigger factor OS=Burkholderia sp. (strain 383)
           GN=tig PE=3 SV=1
          Length = 448

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 131 TSQYTSKVGRLRGAHL---SGKLAKRSGVEDGREGQVRGE 21
           T+Q+T  + ++   HL    G+ AK  G+EDG   ++RGE
Sbjct: 241 TAQFTVTMKKIEWPHLPEIDGEFAKSLGIEDGDLTKMRGE 280

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915961|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_A12.
         (440 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8SJ76|A8SJ76_9GAMM Particulate methane monooxygenase subunit...    33   5.4  
tr|A3DJ78|A3DJ78_CLOTH Transcriptional regulator, LacI family OS...    33   7.0  
tr|Q9AL35|Q9AL35_CLOTM Putative lacI-family transcriptional regu...    33   7.0  
tr|B6DQ09|B6DQ09_9PROT Particulate methane monooxygenase subunit...    33   7.0  
tr|B4BFD4|B4BFD4_CLOTM Transcriptional regulator, LacI family OS...    33   7.0  
tr|Q06AX4|Q06AX4_9BACT Particulate methane monooxygenase (Fragme...    33   9.2  
tr|A1ZM35|A1ZM35_9SPHI Serine/threonine protein kinases, putativ...    33   9.2  

>tr|A8SJ76|A8SJ76_9GAMM Particulate methane monooxygenase subunit A
           (Fragment) OS=uncultured gamma proteobacterium GN=pmoA
           PE=4 SV=1
          Length = 177

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 413 LQTFCMHL*RFRLEKGTKPTEPSRAILKSILGSWRHTTFNFKYWTHCNSQTCSPAI 246
           L TF   +  F  E+  +P   +  +L  + G W +  FNF  WT+     CSPAI
Sbjct: 23  LITFPAAVQYFPWERFRQPWGATVCVLALLFGEWINRYFNFWGWTYFPVNFCSPAI 78


>tr|A3DJ78|A3DJ78_CLOTH Transcriptional regulator, LacI family
           OS=Clostridium thermocellum (strain ATCC 27405 / DSM
           1237) GN=Cthe_2808 PE=4 SV=1
          Length = 345

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 164 INARSFLGRSTTSQYTSKVGRLRGAHLSGKLAKRSGVE 51
           +N  +F G    +Q+  K+G  R  H+SG L K SG+E
Sbjct: 168 VNLDNFEGAYNATQFLIKLGHTRIGHISGDLRKLSGIE 205


>tr|Q9AL35|Q9AL35_CLOTM Putative lacI-family transcriptional
           regulator OS=Clostridium thermocellum PE=4 SV=1
          Length = 345

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 164 INARSFLGRSTTSQYTSKVGRLRGAHLSGKLAKRSGVE 51
           +N  +F G    +Q+  K+G  R  H+SG L K SG+E
Sbjct: 168 VNLDNFEGAYNATQFLIKLGHTRIGHISGDLRKLSGIE 205


>tr|B6DQ09|B6DQ09_9PROT Particulate methane monooxygenase subunit A
           (Fragment) OS=uncultured methane-oxidizing bacterium
           GN=pmoA PE=4 SV=1
          Length = 177

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 413 LQTFCMHL*RFRLEKGTKPTEPSRAILKSILGSWRHTTFNFKYWTHCNSQTCSPAI 246
           L TF   +  F  E+  +P   +  +L  + G W +  FNF  WT+     C PAI
Sbjct: 23  LVTFPAAVQYFLWERSRQPWGATVCVLSLLFGEWINRYFNFWGWTYFPVNFCFPAI 78


>tr|B4BFD4|B4BFD4_CLOTM Transcriptional regulator, LacI family
           OS=Clostridium thermocellum DSM 4150 GN=CtherDRAFT_2100
           PE=4 SV=1
          Length = 345

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 164 INARSFLGRSTTSQYTSKVGRLRGAHLSGKLAKRSGVE 51
           +N  +F G    +Q+  K+G  R  H+SG L K SG+E
Sbjct: 168 VNLDNFEGAYNATQFLIKLGHTRIGHISGDLRKLSGIE 205


>tr|Q06AX4|Q06AX4_9BACT Particulate methane monooxygenase (Fragment)
           OS=uncultured bacterium GN=pmoA PE=4 SV=1
          Length = 177

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 413 LQTFCMHL*RFRLEKGTKPTEPSRAILKSILGSWRHTTFNFKYWTHCNSQTCSPAI 246
           L TF   +  F  E+  +P   +  +L  +LG W +  FNF  WT+     C PAI
Sbjct: 23  LITFPAAVQYFLWERFRQPWGATVCVLALLLGEWINRYFNFWGWTYFPVNFCFPAI 78


>tr|A1ZM35|A1ZM35_9SPHI Serine/threonine protein kinases, putative
           OS=Microscilla marina ATCC 23134 GN=M23134_04414 PE=4
           SV=1
          Length = 1767

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
 Frame = -2

Query: 262 LVLLQSDKSFGLSIHFYNLAITQHPWLSKILETLTHDHFWAAPQL-----HNTPAK*AAY 98
           L LL S+K+  +SI  Y+ A+     LSKILE + HD FW    L     +N  A  AAY
Sbjct: 749 LNLLASEKA--MSILAYDSALDM---LSKILEVIPHDKFWKKHHLLLFSIYNHKALCAAY 803

Query: 97  VAL 89
           + L
Sbjct: 804 LGL 806