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NBDC - LSDB Archive
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BP915971
Clone id YMU001_000081_C04
Library
Length 465
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTAACATTAAAGTAGTCTCATTATTAATATGTGGCATTCTCTTTGCAGGTAAATATGGCA
ACAGAAGAATACCAAAAAGCCAACCATACACGGAGCTCATCATCACAAGAGAAAATGGAT
GCCAAAGATATTGCAATACCAATAGATCTAGAAGATGTCAATCTGACGTTATCATGTGAA
GACTCAATTTCCATTCCAGAGTCCTTGATGCCAGTTAGAGACCACTACAAGGTTCAACAA
CCATCTTTCCATAAGGTATCCAGGTGTACTCCTTCAGGTGTAAAGAATGGCTCTTGGCAC
ATCGACGATAACATGCCTGTGAGAGTCCAAAACAATGAACAGCATCAAATCGAAAGTCTG
GAGATCGACACCTTCCAAGAAAGCTCTTTAATCTTACTTCACAACCAAGATCTTCCCATA
GAGAAATCTGTCAGATGGAACTTCCCCTCAAGACTTGCCTTTGGA
■■Homology search results ■■ -
sp_hit_id O59757
Definition sp|O59757|SPC7_SCHPO Kinetochore protein spc7 OS=Schizosaccharomyces pombe
Align length 121
Score (bit) 33.1
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915971|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_C04.
         (465 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O59757|SPC7_SCHPO Kinetochore protein spc7 OS=Schizosaccharom...    33   0.62 
sp|Q6FW26|MIA40_CANGA Mitochondrial intermembrane space import a...    31   2.3  
sp|Q6CT22|CET1_KLULA mRNA-capping enzyme subunit beta OS=Kluyver...    30   4.0  
sp|Q54KN4|MANF_DICDI Alpha-mannosidase F OS=Dictyostelium discoi...    30   5.2  
sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing...    30   6.7  
sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing...    30   6.7  
sp|Q06817|SYG2_YEAST Glycyl-tRNA synthetase 2 OS=Saccharomyces c...    30   6.8  
sp|Q4R3G4|RNF17_MACFA RING finger protein 17 OS=Macaca fascicula...    30   6.8  
sp|Q9UT53|NMAH_SCHPO Putative nicotinamide-nucleotide adenylyltr...    30   6.8  
sp|Q6DHY5|TBC3G_HUMAN TBC1 domain family member 3G OS=Homo sapie...    29   8.9  

>sp|O59757|SPC7_SCHPO Kinetochore protein spc7
           OS=Schizosaccharomyces pombe GN=spc7 PE=1 SV=1
          Length = 1364

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 28/121 (23%), Positives = 50/121 (41%)
 Frame = +1

Query: 52  NMATEEYQKANHTRSSSSQEKMDAKDIAIPIDLEDVNLTLSCEDSISIPESLMPVRDHYK 231
           + +  E Q + H+ S+S        DIA PI   + ++     ++   P SL P  D   
Sbjct: 162 SFSRNETQSSPHSHSASIISDGSDMDIASPIRSTESDMVSEALNAGHPPPSLYPENDDLS 221

Query: 232 VQQPSFHKVSRCTPSGVKNGSWHIDDNMPVRVQNNEQHQIESLEIDTFQESSLILLHNQD 411
           +Q P     ++  P   K     +D +   R Q N++ +        FQE+   L H++ 
Sbjct: 222 IQNP-----TKALPEAEK----ALDVHDATREQVNDREETNMDLTIQFQEADSFLSHSES 272

Query: 412 L 414
           +
Sbjct: 273 I 273


>sp|Q6FW26|MIA40_CANGA Mitochondrial intermembrane space import and
           assembly protein 40 OS=Candida glabrata GN=MIA40 PE=3
           SV=1
          Length = 404

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 30/125 (24%), Positives = 54/125 (43%)
 Frame = +1

Query: 73  QKANHTRSSSSQEKMDAKDIAIPIDLEDVNLTLSCEDSISIPESLMPVRDHYKVQQPSFH 252
           +K  +++S SS+     +DI +  DLE+   T+S  D      S   V    + + P   
Sbjct: 176 EKTGNSKSESSESDQSEQDI-LSSDLEETMETVSEADKELHQISDNTVLSSEEDKTPKAE 234

Query: 253 KVSRCTPSGVKNGSWHIDDNMPVRVQNNEQHQIESLEIDTFQESSLILLHNQDLPIEKSV 432
           ++   +PSG        DD+       N +  +E++E +  QES+    +N D      +
Sbjct: 235 ELKSTSPSGNDEEPKKEDDSSKTIHSLNSEKDMEAVEEEVKQESA----YNPD---TGEI 287

Query: 433 RWNFP 447
            W+ P
Sbjct: 288 NWDCP 292


>sp|Q6CT22|CET1_KLULA mRNA-capping enzyme subunit beta
           OS=Kluyveromyces lactis GN=CET1 PE=3 SV=1
          Length = 556

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
 Frame = +1

Query: 139 PIDLEDVNLTLSCEDSISIPESLMPVRDHYKVQQPSFHKVSRCTPSGVKNGSWHID---- 306
           P D  D  +++S E  + +PE+  P  + YK   P+ H++ + T     +     D    
Sbjct: 423 PKDSYDTKISISLE--LPVPENDPP--EKYKNHTPTGHRLKKRTSYIHNDSCTRFDITRV 478

Query: 307 DNMPVRVQNNEQHQIES-------LEIDT 372
           +N P+RV N  + + ES       LEI+T
Sbjct: 479 ENKPIRVNNKNEKEPESDTTYEVELEINT 507


>sp|Q54KN4|MANF_DICDI Alpha-mannosidase F OS=Dictyostelium
           discoideum GN=manF PE=3 SV=1
          Length = 994

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 331 NNEQHQIESLEIDTFQESSLILLHNQDLPIEKSVRWNFPSR 453
           NN+Q Q +   I TF  +S+ L++  +  I+K + +NF  R
Sbjct: 669 NNQQQQQQQQTISTFNYNSIKLINTGNEMIDKKINFNFHIR 709


>sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing
            virus (isolate Hohn) PE=3 SV=1
          Length = 2180

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 60   NRRIPKSQPYTELIITRENGCQRYCNTNRSRR 155
            +R + K+   ++LII  + GC  YCN +R R+
Sbjct: 1042 SRDLEKACTKSDLIIKGDKGCSGYCNPSRRRK 1073


>sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing
            virus (isolate Shepherd) PE=3 SV=1
          Length = 2179

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 60   NRRIPKSQPYTELIITRENGCQRYCNTNRSRR 155
            +R + K+   ++LII  + GC  YCN +R R+
Sbjct: 1041 SRDLEKACTKSDLIIKGDKGCSGYCNPSRRRK 1072


>sp|Q06817|SYG2_YEAST Glycyl-tRNA synthetase 2 OS=Saccharomyces
           cerevisiae GN=GRS2 PE=1 SV=1
          Length = 618

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +1

Query: 52  NMATEEYQKANHTRSSSSQEKMDAKDIAIPIDLEDVNLTLSCEDSISIPESLMPVRDHYK 231
           N  T EY +A+H    + ++++  KD+  P D++++   L+  D  S PE L  V   Y 
Sbjct: 93  NPKTGEYYRADHLIEQTLKKRLLDKDVN-PQDMKNMEKILTTIDGFSGPE-LNLVMQEYN 150

Query: 232 VQQP 243
           +  P
Sbjct: 151 INDP 154


>sp|Q4R3G4|RNF17_MACFA RING finger protein 17 OS=Macaca fascicularis
            GN=RNF17 PE=2 SV=2
          Length = 1534

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
 Frame = +1

Query: 40   SLQVNMATEEYQKANHTRSSSSQEKMDAK------DIAIPIDLEDVNLTLSCEDSISIPE 201
            +++  +A  E  K     S  ++EK + K        +I   LED  L +   DS+ +PE
Sbjct: 699  AIKCKLAYIEPYKRTMQWSKEAKEKFEDKAQDKFMTCSIIKILEDNVLLVELFDSLGVPE 758

Query: 202  -SLMPVRDHYKVQQPSFHKVSRCTPSGVKNGSWHID--DNMPVRVQNNEQHQIESLEIDT 372
             +   + D    +  + +++         N   HI+  D  P  + +NE H +  +   +
Sbjct: 759  MTTTSINDQLVKEGLASYEIGYILKD---NSQKHIEVWDPSPEEIISNEVHNLNPVSAKS 815

Query: 373  FQESSLILLHNQDLPI 420
                +   L+N++LP+
Sbjct: 816  LPNENFQSLYNKELPV 831


>sp|Q9UT53|NMAH_SCHPO Putative nicotinamide-nucleotide
           adenylyltransferase C806.06c OS=Schizosaccharomyces
           pombe GN=SPAC806.06c PE=1 SV=1
          Length = 365

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 211 PVRDHYKVQ--QPSFHKVSRCTPSGVKNGSWHIDD 309
           PV DHYK +   P++H+V  C  +  +  SW + D
Sbjct: 166 PVNDHYKKEGLAPAYHRVRMCELACERTSSWLMVD 200


>sp|Q6DHY5|TBC3G_HUMAN TBC1 domain family member 3G OS=Homo sapiens
           GN=TBC1D3G PE=2 SV=1
          Length = 549

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 130 IAIPIDLEDVNLTLSCEDSISIP--ESLMPV-RDHYKVQQPSFHKVSRCTP 273
           I I ID   + LTL   D   +   ++LMP+ R  +KVQQ    K SRC P
Sbjct: 270 IRILIDRISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGP 320
tr_hit_id Q9PCU6
Definition tr|Q9PCU6|Q9PCU6_XYLFA Putative uncharacterized protein OS=Xylella fastidiosa
Align length 37
Score (bit) 37.0
E-value 0.48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915971|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_C04.
         (465 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9PCU6|Q9PCU6_XYLFA Putative uncharacterized protein OS=Xylel...    37   0.48 
tr|Q23QN4|Q23QN4_TETTH IQ calmodulin-binding motif family protei...    37   0.65 
tr|Q4DXK5|Q4DXK5_TRYCR Putative uncharacterized protein OS=Trypa...    36   0.85 
tr|Q4DCV3|Q4DCV3_TRYCR Putative uncharacterized protein OS=Trypa...    36   1.1  
tr|B4NHG2|B4NHG2_DROWI GK14221 OS=Drosophila willistoni GN=GK142...    35   2.5  
tr|A8XFF6|A8XFF6_CAEBR CBR-RAD-54 protein OS=Caenorhabditis brig...    35   2.5  
tr|Q22P63|Q22P63_TETTH ATPase, AAA family protein OS=Tetrahymena...    33   7.2  
tr|B6FV92|B6FV92_9CLOT Putative uncharacterized protein OS=Clost...    33   9.1  
tr|Q88QZ7|Q88QZ7_PSEPK Sensory box protein OS=Pseudomonas putida...    33   9.4  
tr|Q49XR2|Q49XR2_STAS1 Putative Biotin-acetyl-CoA carboxylase li...    33   9.4  
tr|A5VXC5|A5VXC5_PSEP1 Diguanylate cyclase/phosphodiesterase wit...    33   9.4  
tr|B3XLR7|B3XLR7_LACRE Putative uncharacterized protein OS=Lacto...    33   9.4  
tr|A7EMB0|A7EMB0_SCLS1 Putative uncharacterized protein OS=Scler...    33   9.4  

>tr|Q9PCU6|Q9PCU6_XYLFA Putative uncharacterized protein OS=Xylella
           fastidiosa GN=XF_1659 PE=4 SV=1
          Length = 321

 Score = 37.0 bits (84), Expect = 0.48
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 357 SGDRHLPRKLFNLTSQPRSSHREICQMEL-PLKTCLW 464
           +GDRH PRK   + +  R SH EIC +E+ PL+   W
Sbjct: 130 TGDRHEPRKNIRVNTGKRFSHSEICHLEISPLRWRFW 166


>tr|Q23QN4|Q23QN4_TETTH IQ calmodulin-binding motif family protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00253470 PE=4
           SV=1
          Length = 1692

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = +1

Query: 223 HYKVQQPSFHKVSRCTPSGVKNGSWHIDDNMPVRVQNNEQHQIESLEIDTFQESSLILLH 402
           H +V   +FH++S+      K  S    DN+    QN  Q+   S E+   Q++SL    
Sbjct: 690 HLQVSTDNFHQISKSLKQNQKLNSIKSSDNLENHSQN--QNHFSSEEVSKTQQNSLDKTK 747

Query: 403 NQDLPIEKSVR 435
           +Q   IE SVR
Sbjct: 748 SQQYSIESSVR 758


>tr|Q4DXK5|Q4DXK5_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053506195.210 PE=4 SV=1
          Length = 380

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +1

Query: 55  MATEEYQKANHTRSSSSQEKMDAKDIAIPIDLEDVNLTLSCEDSISIPESLMPVRD-HYK 231
           +A+ EY K +H R ++ +EK +A D+  P +   V++  + +DS   P++L   R  HY+
Sbjct: 184 IASVEYAKGSHERCANLKEKKNAMDLGKPGEAIQVHVPFALDDSAPRPDNLTEHRGAHYR 243


>tr|Q4DCV3|Q4DCV3_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053506407.100 PE=4 SV=1
          Length = 380

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 55  MATEEYQKANHTRSSSSQEKMDAKDIAIPIDLEDVNLTLSCEDSISIPESLMPVRD-HYK 231
           +A+ EY K +H R ++ +EK  A D+  P +   V++  + +DS   P++L   R  HY+
Sbjct: 184 IASVEYAKGSHARCANLKEKKKAMDLGKPGEAIQVHVPFALDDSAPRPDNLTEHRGAHYR 243


>tr|B4NHG2|B4NHG2_DROWI GK14221 OS=Drosophila willistoni GN=GK14221
            PE=4 SV=1
          Length = 1225

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 27/120 (22%), Positives = 51/120 (42%)
 Frame = +1

Query: 40   SLQVNMATEEYQKANHTRSSSSQEKMDAKDIAIPIDLEDVNLTLSCEDSISIPESLMPVR 219
            S  V +  + Y +++   S S + +M      +P+ ++ V   +  E ++S       ++
Sbjct: 870  SSSVKLTEDHYLESSSNSSDSLETQMAINGTDMPLLIKAV--VIEFESNVSYSTVYANIK 927

Query: 220  DHYKVQQPSFHKVSRCTPSGVKNGSWHIDDNMPVRVQNNEQHQIESLEIDTFQESSLILL 399
            + Y+  +  F +     P G+KNG W I D     VQ+   H      +     S L+LL
Sbjct: 928  EFYQTVENWFQQRLISAPDGLKNG-WFISDLKFYNVQDTLSHDTLIAILLAMATSLLVLL 986


>tr|A8XFF6|A8XFF6_CAEBR CBR-RAD-54 protein OS=Caenorhabditis
           briggsae GN=Cbr-rad-54 PE=4 SV=2
          Length = 1079

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 267 TPGYLMERWLLNLVVVSNWHQGLWNGN 187
           T  YLM+ WLLNLV++  W Q  + GN
Sbjct: 377 TSTYLMKEWLLNLVIIMPWLQSCYLGN 403


>tr|Q22P63|Q22P63_TETTH ATPase, AAA family protein OS=Tetrahymena
           thermophila SB210 GN=TTHERM_00414230 PE=4 SV=1
          Length = 761

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +1

Query: 70  YQKANHTRSSSSQEKMDAKDIAIPIDLEDVNLTLSCEDSI---SIPESLMPVRDHYKVQQ 240
           Y +++    S S   +D+ ++A  IDL  + +       I    +P+ +  V D  K + 
Sbjct: 42  YIESSQKLESESHISLDSWEVADNIDLYQIIMEFEQYYDIRFGKLPKLVRKVNDDQKKKM 101

Query: 241 PSFHKVSRCTPSGVKNGSWHIDDNMPVRVQNNEQHQIES 357
           PSF K+S  TP+   + S     N+   +QNN    + S
Sbjct: 102 PSFPKIS--TPTKASSTS----SNIKQELQNNSNSSVNS 134


>tr|B6FV92|B6FV92_9CLOT Putative uncharacterized protein
           OS=Clostridium nexile DSM 1787 GN=CLONEX_04081 PE=4 SV=1
          Length = 216

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -3

Query: 397 VRLKSFLGRCRSPDFRFDAVHCFGLSQACYRRCAKSHSLHLKEYTWIPYGKMVV 236
           V L   L R  +P   F ++H +    AC    A  HS  LKEY WI Y  +V+
Sbjct: 117 VDLVKQLYRADTPTNIFPSLHVYNSIGACI---AIMHSQRLKEYRWIQYASLVL 167


>tr|Q88QZ7|Q88QZ7_PSEPK Sensory box protein OS=Pseudomonas putida
           (strain KT2440) GN=PP0337 PE=4 SV=1
          Length = 896

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 325 VQNNEQHQIESLEIDTFQESSLILLHNQDLPIEKSVRWNFPSR 453
           V+NN +  +   E+D F +  L L   + L +E  +RWN P R
Sbjct: 640 VENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNHPER 682


>tr|Q49XR2|Q49XR2_STAS1 Putative Biotin-acetyl-CoA carboxylase
           ligase OS=Staphylococcus saprophyticus subsp.
           saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1288
           PE=4 SV=1
          Length = 323

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +1

Query: 193 IPESLMPVRDHYKVQQPSFHKVSRCTPSGV--KNGSWHIDDN--MPVRVQNNEQHQIESL 360
           I E    +RD Y      +HK  R T + V  K  +  IDDN  + V  +N +QHQ+ S 
Sbjct: 260 IKEPFSSIRDEYIATSNIWHKQLRFTENNVQFKGEAIDIDDNGFLIVLDENKQQHQLMSA 319

Query: 361 EID 369
           +I+
Sbjct: 320 DIE 322